Facts Flashcards

(369 cards)

1
Q

What is NADPH required for?

A

Fatty acid biosynthesis
Steroid synthesis
GSH regeneration

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2
Q

Functions of the Pentose Phosphate Pathway

A
  • Produce NADPH in cytoplasm
  • Biosynthesis reducing power for lipid synthesis - high activity in liver and adipose tissue.
  • Maintain free cysteine groups SH on certain proteins and prevent oxidation to -S-S- disulphides bonds
  • Produce C5 sugar for nucleotides - high activity in dividing tissue for example bone marrow
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3
Q

A deficiency is G6PDH causes what is RBCs?

A

In RBCs the level of NADPH decreases which results in inappropriate disulphides bonds forming which forms aggregated proteins called Heinz bodies. This increases the cells likelihood of haemolysis.

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4
Q

Osteogenesis Imperfecta

A

brittle bone
• Mutation in the COL1A gene
• Incorrect production of collagen 1 fibres
• Weak bones and increased risk of fracture
• Shortened stature
• Blue sclera
• Hearing loss

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5
Q

Rickets

A
  • Mainly affects children
  • Vitamin D deficiency
  • Poor calcium mobilisation
  • Ineffective mineralisation
  • Weakened bone development
  • Soft bones
  • Shortened height and stature
  • Painful to walk
  • Bowed legs
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6
Q

Osteomalacia

A
  • Rickets in adults
  • Vitamin D deficiency
  • Lower mineralisation
  • Increased osteiod
  • Increased calcium resorption
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7
Q

Primary osteoporosis

A
  • Type 1 occurs in post menopausal women due to an increase in osteoclast numbers due to a loss of oestrogen.
  • Type 2 occurs in order men and women due to loss of osteoblast function due to loss of androgen and oestrogen.
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8
Q

Secondary Osteoporosis

A
  • Results of drug therapy - corticosteroids
  • Process affects bone remodelling
  • Metabolic bone diseases
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9
Q

Risks factors for osteoporosis

A
  • insufficient calcium intake
  • Lack of exercise - immobilisation of bones lead to accelerated bone loss. Physical activity is needed to maintain bone mass.
  • Cigarette smoking - in women linked to higher rates of osteoporosis.
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10
Q

Achondroplasia

A
  • Inherited mutation in the FGF3 receptor gene
  • FGF promotes collagen formation from cartilage - endochondral ossification affected
  • Results in short stature but normal sized head and torso - long bones cant lengthen properly.
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11
Q

Osteoarthritis

A
  • Mechanical failure of articular cartilage
  • Narrowing of joint space
  • Bones rub against one another
  • Bone growths called osteophytes may occur
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12
Q

Rheumatiod arthritis

A
  • Autoimmune disease
  • inflammation of synovial membrane as it is attacked
  • Thickening of joint capsule
  • Subsequent damage to underlying bone and articular cartilage
  • Both bone and cartilage disintegrate.
  • Increase in number of macrophages, osteoclasts, fibroblasts, T cells, B cells, mast cells, dendritic cells and plasma cells.
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13
Q

Bone repair - haematoma

A

Blood vessels in bone and periosteum break
A mass of clotted blood forms
Bone cells at the edge of the fracture die.
Swelling and inflammation occur (granulocytes enter the cell)
Phagocytic cells and osteoclasts enter and begin to remove dead tissue
Macrophages will eventually remove the blood clot

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14
Q

Bone repair - fibrocartilaginous callus

A

New blood vessels infiltrate the fracture haematoma
A soft callus of granulation tissue develops
Fibroblasts produce collagen fibres. Others differentiate into chondroblasts that produce
hyaline cartilage
Osteoblasts from the periosteum and endosteum invade the fracture site and begin bone re
construction

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15
Q

Bone repair - bony callus

A

New trabeculae begin to form
The soft callus is converted to bony callus of cancellous bone
Endochondral ossification replaces the cartilage with cancellous bone and intramembranous
ossification replaces any spaces with bone

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16
Q

Bone repair - bone remodelling

A

Cancellous bone begins to be remodelled into compact bone in the cortical region
Material bulging from the outside and inwards is removed by osteoclasts
The final shape of the re-modelled area is the same as prior to the fracture.

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17
Q

Mast cells

A

inflammatory cells found in loose connective tissue near blood vessels. They release histamine - increases blood vessel wall permeability, heparin - anticoagulant and cytokines - attract immune cell.

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18
Q

Galactosaemia - enzymes

A

galactokinase,
UDP galactose 4 epimerase
galactose-1-P uridyl transferase.

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19
Q

Essential fructosuria

A

fructokinase missing causing fructose in urine with no clinical signals

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20
Q

Fructose intolerance

A

Aldolase B missing causing fructose 1 P to accumulate in the liver causing liver damage.

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21
Q

Hashimotos

A

Low T3 and T4 high TSH

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22
Q

Graves

A

Low TSH high T3 and T4

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23
Q

Haemoglobin structure

A

a quaternary structure with 4 subunits - 2 alpha 2 beta. Each subunit has a prosthetic haem group

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24
Q

Sickle cell anaemia structure

A

a mutation in the HBB gene which coverts the glutamate molecule to valine in the beta haemoglobin chain. Glutamate is hydrophilic and valine is hydrophobic. This mutation creates sticky pockets when Hb is in the T state. This causes polymerisation and sickling

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25
Foetal Haemoglobin
remains high after birth until the baby is roughly 2-4 months old. This means sickle cell anaemia isn’t noticed til a few months after birth. This is due to the foetal haemoglobin having a higher affinity for oxygen than adult haemoglobin so the baby can still reach the same level of demand despite possibly having anaemia.
26
Deamination
the hydrolysis of cytosine into uracil.This is due to the removal of the amine group. 5-methylcytosine can undergo deamination to become thymine.
27
Transition and transversion
Transition is change to the same type of base purine to purine (A to G) and pyrimidine to pyrimidine (C to T). Trans version is a change to an alternative base type. (A to T and G to C).
28
Missense / non-synonymous
• Gene product - (change in amino acid)
29
mutation affecting regulatory sequences
• Amount of gene product
30
silent or neutral / synonymous
No effect
31
frame shift / mutation in STOP codon
• Polypeptide length
32
Fork slippage
occurs in a repetitive area where are newly synthesised strand loops out. A nucleotide is added on the new strand. It can also occur on the template strand which results in one less nucleotide on the new strand as it isn’t read as it has bulged out. This can lead to a trinucleotide expansion causing diseases like Huntington’s.
33
Polyploidy
the gain of a haploid set of chromosomes for instance triploidy - 69. Most common cause is polyspermy.
34
Aneuploidy
the loss or gain of whole chromosomes (trisomy or monosmy caused by meiotic non disjunction) For example Down syndrome - chromosome 21 trisomy or Turner syndrome - one of the sex chromosomes is missing 45 X
35
Mosaicism
presence of two or more cell lines in an individual caused by mitotic non-disjunction.
36
Non disjunction
occurs when the chromatids fail to separate from another leading to monosomy or trisomy
37
Reciprocal translocation
Balanced - when 2 chromosomes swap a piece of chromosomal material. No DNA has been lost. This can occur between any 2 chromosomes. This person is still healthy. Unbalanced - when 2 chromosomes swap information and the person receives an unequal amount of one chromosome. This means they have lost DNA. The larger the imbalance the more likely there will be a miscarriage. The baby if survives could be born with birth defects
38
Robertonsian translocation
Only occurs between the acrocentric chromosomes (13,14,15,21,22). 2 acrocentric chromosomes get stuck together. This results in aneupoldy. Females have a higher risk than males.
39
Base excision repair
corrects deamination. The uracil is detected and removed leading to a base-less nucleotide. The baseless nucleotide is removed leaving a hole in the DNA backbone. The hole is filled with the correct base by DNA polymerase and the gap is sealed by ligase.
40
Nucleotide excision repair
corrects thymine dimers created by UV radiation. Once it is detected the surrounding DNA is opened to form a bubble. Enzymes cut away the damaged region. A DNA polymerase replaced the removed DNA and ligase seals the backbone.
41
Mismatch repair
cuts the mismatch area including the mismatch neighbours and removes them by exonuclease. The missing areas is replaced by DNA polymerase and ligase seals the DNA backbone.
42
Single strand repair
not error-free but not error-prone. Relatively simple as the other strand is used to replicate the missing section.
43
Non homologous end joining
The broken ends are recognised by proteins and protected. A complex forms and damaged ends are removed. The broken ends are then ligated together. Thus is error prone.
44
Homologous directed repair
uses the other set of DNA in the chromosome to replicate the missing section
45
Compartment syndrome
``` caused by trauma to one compartment. This can lead to internal bleeding increasing the pressure in one compartment which exerts pressure on another compartment, skin and nerves. This is because muscles are found in compartments separated by fascia. This causes: • Deep constant pain • Paresthesia • Compartment feeling firm and tight • Swollen, red and shiny. ```
46
Skeletal muscle growth
shows hypertrophic growth. This means that the number of muscle cells stays the same but the size of the cells increases
47
Power stroke
ATP attaches to the myosin head which causes the cross bridge to detach. ATP hydrolysed to ADP and Pi cocking the head. Myosin cross bridge attaches to the actin filament. Working stroke - the myosin head pivots and bends as it pulls on the actin filament sliding it towards the midline. A new ATP binds repeating the cycle.
48
Lymph movement aided by:
* Adjacent arteries pulsing * Skeletal muscle movement * Pressure changes in the thorax during breathing
49
Lymph nodes
* Multiple afferent lymphatic vessels that enter via the convex surface. * A single efferent lymphatic vessel leaves through the concave hilum. * Each lymph node has a feeding artery and draining vein that also enter and leave via the hilum. * Dendritic cells are located in germinal centres and when they detect an antigen causes proliferation of B cells. These can then activate T cells.
50
Enlarged lymph node causes
* As lymph nodes fight an infection the germinal centres fill with lymphocytes which causes swelling. * Cancers can metastasise to lymph nodes causing swelling * Lymphoma is a cancer originating in the lymph nodes.
51
Thymus
maturation of bone marrow derived stem cells into immunocompetent T cells changes in Thymus associated with myasthenia gravis.
52
Spleen
Red pulp - filters blood, white pulp - immune systems -Immune functions - antigen presentation by APC Activation of B and T cells Removal of macro molecular antigens -Haemopoietic functions - Removal and destruction of old, damaged erythrocytes and platelets Retrieval of iron from erythrocyte protein Erythrocyte storage
53
Tonsils
Prevents pathogen ingress through nasal or oral routes prevents ingress though aural routes Crytps increase surface area.
54
Vermiform appendix
prevents ingress through GI route prevents ingress arriving from the ileum crypts increase surface area
55
Peyers patches
prevents pathogen ingress though digestion
56
Loose connective tissue
* Multiple cell types * Contains 2 fibres - collagen and elastin * Gel like ground substance ``` Functions • Hold vessels that supply fluids • Permit cell migration • Involved in inflammation • Packs organs • Hold things in place • Insulted and cushions organs ``` Located beneath epithelia
57
Dense irregular
• Fibroblasts • Col 1 in all direction • Resits stress in all directions Deep layer of dermis
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Dense regular
• Fibroblasts • Col 1 parallel • Resists stress in one direction Tendons and Ligaments
59
Cholera - diarrhoea
causes diarrhoea by inhibiting the action of GTPase which breaks down the G alpha S complex. As there is more of type complex adenylyl cyclase is activated more and will convert ATP to cyclic AMP. This causes stimulation of the CFTR transporter in the small intestines which moves chloride ions into the lumen. This causes water to follow by osmosis into the lumen increasing the amount of water in your stool causing diarrhoea.
60
Malignant hyperthermia
Severe reaction to anaesthetics such as succinylcholine Shows an autosomal dominant pattern Massive contractile fasciculation Muscle rigidity caused by excessive Calcium release Outcome is excessive heat and metabolic acidosis Muscle breakdown and hyperkalaemia
61
Types of dependence
Physical dependence relates to experiencing the associated side effects from withdrawal from the substance. Psychological dependence involves feelings of satisfaction and desire to repeat the use of the drug in order to produce pleasure and avoid pain.
62
Uptake of screening
the proportion of those invited who take up the invitation to participate
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Coverage of screening
the proportion of eligible population who have been screened within a given time.
64
Definition of adherence
The extent to which a persons behaviour - taking medication, following a diet and/or executing lifestyle changes - corresponds with agreed recommendations from the healthcare provider
65
Non-adherence might involve ...
* Failing to pick up a prescription or repeat prescription * Stopping medication before the course is complete * Taking more or less of the medication than prescribed * Taking medication at the wrong time, missing doses etc. * Taking some but not all of the medication * Patients may also fail to adhere to treatment recommendations other than medication e.g. lifestyle changes
66
Consequences of non-adherence
health benefits forgone (poor health-related quality of life, increased hospitalisations and premature mortality) wider economic burden (personal, health and social cost).
67
Unintentional non-adherence
Patients want to follow their treatment but are prevented | from doing so by barriers outside of their control
68
Intentional non-adherence
The person decides not to follow the treatment regime based on their beliefs, attitudes and expectations
69
Interventions to improve adherence
Educating patient on the medicine to But these interventions don’t address intentional non-adherence increase their knowledge Simplifying the regimen Making it easier to remember to use the medicine (physical aids and reminders)
70
Explicit rationing
when care is limited. The decisions and basis of decisions are justified by defined rules of entitlement. Technical processes and political processes.
71
Implicit rationing
When care is limited. The allocation of resources are taken through individual clinical decisions without a set criteria. This can lead to inequalities as could be based on social deservingness.
72
Explicit rationing - advantages
Transparent, accountable Opportunity for debate More clearly evidence-based More opportunities for equity in decision-making
73
Explicit rationing - disadvantages
``` Very complex Heterogeneity of patients and illnesses Patient and professional hostility Impact on clinical freedom Some evidence of patient distress ```
74
Purpose of screening
. To give a better outcome compared with finding something in the usual way (having symptoms and self- reporting to health services) • If treatment can wait until there are symptoms, there is no point in screening • Finding something earlier is not the primary objective
75
Five areas of criteria for screening
1. Condition 2. Test 3. Intervention 4. Screening programme 5. Implementation
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Screening criteria - condition
It needs to be an important health problem with epidemiology, incidence, prevalence and natural history understood. All cost effective primary preventions have been implemented
77
Criteria of screening - the test
Simple, safe, precise and validated Agreed cut off level Acceptable to public Agreed policy for further diagnostic investigation
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Criteria of screening - intervention
Evidence that intervention at pre-symptomatic phase leads to better outcomes. Good evidence based policies covering which individuals should receive intervention
79
Criteria of screening - screening programme
Proved effectiveness in reducing mortality and morbidity Clinically, socially and ethically acceptable Benefits outweigh harms
80
Criteria of screening - implementation
All of other options for managing the condition have been considered Management of monitoring programme Adequate staffing and facilities Evidence based information available for internet participants
81
Classical learning theories
Environmental cues have connection with behaviour. Avoid cues and change association of cue with behaviour Pair behaviour with unpleasant response
82
Operant conditioning
Act on environment and behaviour shaped by consequences | Behaviour is reinforced if rewarded or a punishment is removed
83
Limitations of conditioning theories
Classical and operant conditioning based on simple stimulus-response associations No account of cognitive processes, knowledge, beliefs, memory, attitudes, expectations etc. No account of social context
84
Social learning theory
Behaviour is goal related People are motivated to perform behaviours if they are valued and believe they can do it Modelling more effective if models are if high status or are like us Influenced by peers, family and media figures
85
Cognitive dissonance
Discomfort when hold inconsistent beliefs or actions/events don’t match beliefs – Reduce discomfort by changing beliefs or behaviour – Health promotion: • providing health information (usually uncomfortable) creates mental discomfort and can prompt change in behaviour
86
Health belief model
Beliefs about health treat - perceived susceptibility - perceived severity Beliefs about health related behaviour - perceived benefits Cues to Action - perceived barriers
87
Theory of planned behaviour
. Attitude towards behaviour . Subjective norm . Perceived control Leads to intention Leads to action
88
COM-B model - capability
Physical and psychological capability | Knowledge, skill, strength, stamina
89
COM-B model - motivation
Reflective amp automatic | Plans, evaluations, desires, impulses
90
COM-B model - opportunity
Physical and social opportunity | Time, resources, cues and prompts
91
Cost minimisation analysis
• Outcomes assumed to be equivalent • Focus is on costs (i.e. only the inputs) • Not often relevant as outcomes rarely equivalent • Possible example: – Say all prostheses for hip replacement improve mobility equally. Choose the cheapest one.
92
Cost effectiveness analysis
• Used to compare drugs or interventions which have a common health outcome e.g. reduction in blood pressure • Compared in terms of cost per unit outcome e.g. cost per reduction of 5mm/Hg • If costs are higher for one treatment, but benefits are too, need to calculate how much extra benefit is obtained for the extra cost • Key question: Is extra benefit worth extra cost?
93
Cost benefit analysis
* All inputs and outputs valued in monetary terms * Can allow comparison with interventions outside healthcare * Methodological difficulties e.g. putting monetary value on non-monetary benefits such as lives saved * “Willingness to pay” often used, but this is also problematic
94
Cost utility analysis
* Particular type of cost effectiveness analysis * Cost utility analysis focuses on quality of health outcomes produced or foregone * Most frequently used measure is quality adjusted life year (QALY) * Interventions can be compared in cost per QALY terms We are going to look more closely at QALYs…
95
Gaucher disease
The bulid up of certain fatty substances in organs particularly the spleen and liver. It causes them to enlarge and this affects their function. It can also occur in bone tissue causing them to become weaker and fracture easier.
96
Properties of peptide bonds
Planar Stereoisomerism Bonds either side are free to rotate Rigid
97
Resting potential of cardiac myocytes
-80mV
98
Resting potential of neurones
-70mV
99
Resting potential of skeletal muscle myocytes
-90mV
100
Resting potential of smooth muscle myocytes
-50mV
101
Generation of glands - in utero development | Exocrine
Growth signal received - fibroblast growth factor Proliferation of daughter cells occurs and extracellular protein degrades enzyme produced Central cells die off through apoptosis to produce a duct
102
Generation of glands - in utero development | Endocrine glands
Growth signal received - fibroblast growth factor Proliferation of daughter cells occurs and extracellular protein degrades enzyme produced Production of angiogenic factors to stimulate blood vessel growth in and around the tissue Link to mother cells broken through apoptosis
103
Difference between endocrine gland for normal and for thyroid follicles
In thyroid follicles, production of colloid between epithelial cells causes expansion of follicle into a sphere
104
When does gland generation occur
Weeks 5 and 6
105
Mucous membranes
Line certain internal tubes which open to the exterior GI Tract, respirator tract and urinary tract Bear mucus secretion cells - goblet Carries blood and lymphatic vessels and nerves
106
Serous membrane
Thin, two part membrane which lines certain closed cavities and envelop the viscera. The peritoneum Pleural sacs Pericardial sac Secrete watery lubricating fluid Simple squamous cells Carries blood and lymphatic vessels and nerves
107
Types of hair
Vellus - short thin and covers most of your body hair on arms Terminal - thick long - vellus replaced by terminal in puberty Hair on head, pubic hair Lanugo - covers the developing foetus
108
Function of hair
Thermoregulation Sexual attraction Sensation Protection
109
Blood clotting cascade
Intrinsic and extrinsic pathways cause the activation of factor X. This causes thrombin activation which causes the formation of a fibrin clot. This occurs by thrombin converted fibrinogen into fibrin
110
Stopping the clotting cascade
Localisation of prothrombin - dilution of clotting factors by blood flow and removal by liver Digestion of factors by proteases Factor Va and 8a degraded by protein C
111
Breaking the clot - fibrinolysis
Plasminogen - inactive precursors - are activated by streptokinase anf t-PA to produce plasmin. This converts fibrin into fibrin fragments.
112
Key components of diet and functions
Carbohydrates - source of monosaccharides Protein - source of amino acids Lipids - essential fatty acids, reduced bulk of diet Water - replaces lost water Fibre - essential for normal function of GI tract Vitamins - prevents deficiencies
113
Essential amino acids
``` Isoleucine Lysine Threonine Valine Phenylalanine Tryptophan Leucine Histidine Methionine ```
114
Essential fatty acids
Linoleic acid and linolenic acid
115
Osteiod
Collagen Calcium hydroxyapatite Sodium hydroxyapatite
116
Lineweaver Burke plot y intercept
1/vmax
117
Lineweaver Burke plot x intercept
-1/km
118
Lineweaver Burke plot gradient
Km/ vmax
119
Where are ketone bodies synthesised
Liver mitochondria
120
Three different ketones
Acetoacetate Acetone Beta hydroxybutyrate
121
Normal plasma ketone concentration
Less than 1mM
122
Ketone production pathway
Acetylcholine Co-A is converted into HMG-CoA by synthase. That is then converted into acetoacetate by lyase. It then can become acetone or beta hydroxybutyrate.
123
Ketone body production in fed state
Insulin to glucagon ratio is high. Lyase is inhibited and reductase is activated so cholesterol is synthesised instead of ketone bodies.
124
Ketone body synthesis in starvation state
When insulin to glucagon ratio is low. Lyase is activated, reductase is inhibited. Ketone body synthesised.
125
Features of ketone bodies
Water soluble Volatile acetone may be excreted via the lungs Acetoacetate and beta hydroxybutyrate are relatively strong organic can lead to ketoacidosis. Above renal threshold so excreted in the urine - ketonuria
126
What are some cancer repair defects
DDR defect Mutated gene Syndrome Cancer predisposition
127
Cancer evolution - differential sensitivity
Chemotherapy is applied. One clone may be susceptible to the chemotherapy. The other clone may not be. This means it can reproduce and grow as there is no competition with other clones.
128
Cancer evolution - chemotherapy induced mutagenesis
When chemotherapy is applied a mutation occurs creating a new clone. This develops and grows to form a tumour as it is resistant to chemotherapy.
129
Synthetic lethality strategies
Clever stratifies are put in place that if a cancer cell develops the healthy gene is knocked out so the cancer gene is the predominant gene. This causes cellular death.
130
Southern Blotting uses
To analyse clones Investigate gene structure - large deletions Investigate gene expansions, triplet repeats - Huntington’s To investigate mutations in genetic tests Investigate variation - DNA fingerprinting
131
Southern Blotting process
DNA fragments are added to an agarose gel for electrophoresis. Transfer to more solid support like a nitrocellulose sheet by blotting. Addition of a fluorescent DNA probe will bind to the complementary sequence. An image is then created using an auto radiogram.
132
Characteristics of probes in southern blotting
Probs dont align completely Less than 80% similarity with the DNA Don’t affect the position of the target sequence in the gel.
133
Microarrays
1000s of genes to be analysed simultaneously Contain single stranded oligonucleotides with sequence corresponding to coding regions of the genome attached to a solid support Changes in gene expression can be monitored.
134
FISH - fluorescent in situ hybridisation
Probes are made against particular DNA sequences and can be added to cells that have been isolated. It can light up chromosomes to show monosomy or trisomy.
135
Requirements for gel electrophoresis
Gel - a matrix that allows separation of the protein sample Buffer - maintains charge on the protein samples Power supply - generates charge difference across the gel Stain / detection - identify the presence of the separated proteins
136
SDS-PAGE
``` Abolishes 2nd and 3rd structure Separates proteins based on size Ionic detergent breaks down non covalent interactions within proteins Slow - large Fast - small ```
137
Sanger DNA sequencing
Based on use of dideoxyneucleotides to terminate chain elongation Recognised by DNA polymerase as it has a 2 prime H on the ribose sugar. DNA molecules of increasing size are created with fluorescent molecule being the dideoxyneucleotides. Separated out by capillary electrophoresis Detect fluorescently labelled molecules.
138
Agarose gel electrophoresis process
Samples placed in wells at the negative electrode DNA moved towards the positive electrode Smallest samples move furthest DNA is visualised by staining with ethidium bromide
139
Oxidative Phosphorylation
Electron transport coupled to ATP synthesis Electrons are transferred from NADH to FAD2H to molecular oxygen Energy is released to generate a proton gradient, Proton motive force. Energy from the dissipation of the proton motive force is coupled to the synthesis of ATP from ADP.
140
Regulation of oxidative phosphorylation
When [ATP] is high and [ADP] is low there is less substrate for ATP synthase. Concentration of H+ increases in the inter mitochondrial space. Prevents further H+ pumping - stops electron transport
141
Inhibition of Oxidative phosphorylation
Inhibitors like cyanide block electron transport as it prevents the acceptance of electrons by 02.
142
Uncoupling of oxidative phosphorylation
Uncouplers increase the permeability of the mitochondrial inner membrane to protons which dissipates the proton gradient reducing the proton motive force No drive for ATP synthesis
143
Substrate level phosphorylation
Requires soluble enzymes Energy coupling occurs directly through the formation of high energy bonds. Can occur in limited extent in absence of O2.
144
Myelination in the PNS
Schwann cells surround the axon Mesaxon membrane begins to wrap around the axon This squeezes the cytoplasm towards the outer surface Plasma membrane is consequently compacted to form myelin sheath.
145
Vasculogenesis
Formation of new blood vessels Angioblast precursors in the bone marrow During embryonic development
146
Angiogenesis
Formation of new blood vessels from existing ones | Collateral arteries
147
Sprouting angiogenesis
FGF produced by mesenchymal cells causes pericytes to convert into smooth muscle cells. This process is slow and takes hours to days to form blood vessels
148
Division of primary vessel - intussusception
Twinned vessels from primary vessel Needs multiple growth factors Process is quick and takes minutes to hours to form.
149
Types of drug administration
``` Subcutaneous Intravenous Oral Intramuscular Rectal Sublingual ```
150
Factors affecting drug absorption
Physiological factors - GI length, drug lipophilicity, GI Physiology - blood flow, GI mobility, food/pH First Pass Metabolism - gut lumen may denature drugs, gut/liver have 2 main enzymes Phase 1 and 2 enzymes
151
Effect on first pass metabolism
Reduces availability of drug reaching the systemic circulation therefore affects therapeutic potential
152
Bioavailability
Fraction of a defined dose which reaches the systemic circulation.
153
Factors affecting drug distribution
Drug molecule lipophilicity or hydrophilicity Degree of drug binding to plasma or other tissues and proteins - albumin
154
Vd on penetration
Smaller Vd means less penetration | Larger Vd means more penetration
155
Phase 1
Cytochrome P450 enzymes | These are versatile generalists which metabolise a large range of molecules.
156
Phase 2
Carried out by hepatic enzymes Mainly cytosolic Generalists but are more rapid
157
Main factors of direct clinical relevance are ...
Age Sex General health
158
CYP450 Inhibition
Concurrent administration of certain drugs can inhibit specific CYP450 isozymes Inhibition can be competitive and non competitive Plasma levels increase Examples are grapefruit juice inhibits CYP 3A4
159
Main route of exit of a drug
Through the kidneys
160
Renal excretion of drugs - process
. Free drug enters the glomerular filtrate through the bowmans capsule . Active secretion of drugs through the proximal tubule. . Passive reabsorption of lipid soluble drug which has been concentrated so drug is higher in lumen so enters the perivascular space. . Lipid Insoluble drug into urine.
161
Clearance of drug
The volume of plasma that is completely cleared of the drug per unit of time
162
Total body clearance =
Hepatic clearance + renal clearance
163
Drug half life
The amount of time over which the concentration of a drug in plasma decreases to half of that of the original concentration.
164
Multi pass membrane protein
Consists of one polypeptide chain that penetrates the membrane at least twice
165
Multi subunit membrane protein
Consists of more than one polypeptide chain - where one is anchored to the membrane
166
Which way to sodium ions move?
Into the cell from the extracellular space
167
Which way does potassium move?
Out of the cell
168
Which way does chloride ions move?
Into the cell
169
Which way do anions other than chloride move | Phosphate, amino acids and bicarbonate
Out of the cell
170
Hypodermis - location, function and structure
Location - lowest layer of skin - subcutaneous layer Structure is mainly adipose tissue and loose connective Functions - provides energy store, shock absorber and acts as an insulator
171
Dermis location, structure and function
Location - between epidermis and hypodermis Structure - 2 layers upper and lower Functions - contains hairs and sweat glands, contains sensory structures
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Epidermis
Location - outermost layer of epithelial cells Structure - 4 or 5 layers, Held together by focal adhesions and desmosomes Functions - prevents water loss, prevents pathogen entry, synthesis of keratin
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Layer of epidermis
Stratum corneum Stratum lucidum - only soles of feet and palms of hands Stratum granulosum Stratum spinosum Stratum basale
174
Stratum corneum
* Outermost layer made of squames (dead keratinocytes) • Thick on palms and soles of feet – prone to injury * Continuously shed
175
Stratum Granulosum
• Stratified squamous epithelium • Lamellar granules (filament-associated proteins that assemble keratin fibrils and secrete it) • Tonofibrils (bundles of keratin filaments and keratohyalin granules) made by lamellar bodies
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Stratum Spinosum
* Cuboidal epithelium arranged in 3 layers (held together by desmosomes) * Producers of lamellar bodies (keratohyalin factories)
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Stratum basale
• Tall columnar epithelial cells • Constantly renew keratinocytes by cell division • As daughter cells differentiate they move away from the epidermis-dermis junction • These make keratin filaments (tonofilaments) - They lose their ability to divide • Also home to the melanocytes – produce melanin
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Melanocytes
Occurs at intervals | Produces melanin the main pigment of the skin
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Langerhans cells
Highly specialised capacity to present antigens to T lymphocytes and mediate a response.
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Merkel cells
Mechanoreceptor cells associated with sensory nerve endings
181
Polygenic Inheritance
occurs when one characteristic is controlled by two or more genes
182
Anaphase lag
a consequence of an event during cell division where sister chromatids do not properly separate from each other because of improper spindle formation.
183
Main types of RNA.
Ribosomal RNA Messenger RNA Transfer RNA
184
Transcription initiation
``` Transcription factor binds promoter. Binding is directional on the TATA box RNA polymerase is recruited Unwinding of DNA helix Formation of a transcription bubble Transcription initiates directionally 5’ to 3’ ```
185
Transcription Elongation
RNA synthesis from 5’ to 3’ Template reads 3’ to 5’ Single stranded RNA molecule is made
186
Transcription termination
Sequence dependent, other factors involved | Results in a primary RNA molecule
187
RNA processing
Post transcriptional modifications rRNA and tRNA have chemical modifications and cleaveage mRNA is capped, slipiced and tailed.
188
Initiation code for translation
AUG
189
Termination
UAA, UAG, UGA
190
Translation - initiation
Recognition of cap by tRNA-Met | Recognition of the AUG anticodon
191
Translation - elongation
Another tRNA molecule moves to its complementary codon. A peptide bond forms and the first tRNA molecule leaves and another one comes .... Growing polypeptide pushed into exit tunnel
192
Translation - termination
Release factor recognises the STOP codon Hydrolysis resulting in a free peptide and uncharted tRNA Dissociation of ribosome into subunits
193
Cells with an absolute requirement for energy
RBCs Neutrophils Cells in the lens of the eye Cells in the kidney medulla
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Effect of lactate dehydrogenase
Lactate to pyruvate
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Where does lactate form?
Skeletal muscle and RBCs
196
Organs which metabolise lactate into pyruvate
Liver Kidneys Heart
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What is glycerol phosphate formed from
DHAP
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Enzyme that produces glycerol phosphate
Glycerol 3 phosphate dehydrogenase
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Where is glycerol phosphate made in the body
Adipose tissue and liver
200
Function of glycerol phosphate
Used in triglycerides | Phospholipid biosynthesis
201
What is 2,3 bisphosphoglycerate formed form
1,3 bisphosphoglycerate
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What enzyme produces 2,3 bisphosphoglycerate
Bisphosphoglycerate mutase
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Where in the body is 2,3 bisphosphoglycerate formed in the body
RBC
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Function of 2,3 bisphosphoglycerate
Regulator of Hb O2 affinity, promotes release of O2 from Hb
205
Re-feeding syndrome
Kwashiorkor - unable to deal with protein rich food in large amounts due to down regulation of enzymes in urea cycle. This can lead to a build up of ammonia causing toxicity. This is why small amount of proteins need to be increased at regular intervals.
206
How does re-feeding syndrome increase the risk of cardiac arrhythmias.
When a starving individual consumes large amounts of glucose there is a risk of increased insulin levels. Insulin causes potassium into the cell which causes hyperkalaemia which can cause arrhythmias.
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Transposable elements
Sections of DNA that move around the genome. If they insert themselves into a functional gene it could cause damage.
208
Process that occurs when noradrenaline binds at the beta 1 adrenoceptors which increase blood pressure?
Binding of noradrenaline causes a conformational change to the GPCR. GPCR interacts with the G protein which causes GTP to displace GDP on the alpha G subunit Th complex separates and the alpha-GTP interacts with adenylyl cyclase to convert ATP into cAMP. cAMP binds to PKA. This increases Calcium concentration of cardiac muscles.
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Mindfulness
Mindfulness means ​paying attention on purpose​, in the ​present moment​, and in a non-judgemental way
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What is hereditary spherocytosis ?
Decreased levels of spectrin in the cytoskeleton of RBCs which then become round in shape.
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What is hereditary elliptocytosis?
Defective spectrin causes RBCs to become rugby ball shaped and become more prone lyse.
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What does ESSENCE stand for?
``` Education Spirituality Stress management Environment Nutrition Connectedness Exercise ```
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What does SMART stand for?
``` Specific Measurable Attractive Realistic Timely ```
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Types of collagen
1 - found in fibrocartilage, bone, connective tissue 2 - found in cartilage 3 - found in lymph vessels, tissues 4 - found in basement membrane
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What causes the shocking absorbing property of articular cartilage?
Hydration of glycosaminoglycans
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Why is cartilage different to other connective tissue?
It is an a vascular tissue - no blood supply
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What does the endosteum do?
Lines the medulla cavity
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Where do you find sensory neurone cell bodies
The dorsal root ganglia
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What is a synonym for anterior
Ventral
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What is a synonym for posterior
Dorsal
221
What is ipsilateral?
Structures are on the same side
222
What is contra lateral?
Structures are on opposite sides
223
Flexion does what to the angle
Decreases angle between the moving part and the stationary part
224
Extension
Increases the angle with the moving part and stationary part
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Abduction
Takes structures away from the midline
226
Addiction
Brings structures back towards the body
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Supine
Facing upwards on your back
228
Prone
On your front back upwards
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Inversion - feet
Foot points inwards
230
Eversion - feet
Foot points outwards
231
Dorsiflexion
Foot points upwards
232
Plantarflexion
Foot points downwards
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Importance of glycosylation for proteins and lipids
Prevent digestion by proteases and lipases
234
Where are protein hormones synthesised
Ribosomes and RER
235
Where are steroid hormones synthesised?
Precursors are made in the mitochondria and created in the SER.
236
Which hormones are packaged into vesicles?
Protein
237
Is vitamin C stored in the body?
No
238
Growth factor of RBC
Erythropoietin
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Growth factor of WBC
G-CSF
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Growth factors for lymphocytes
Interleukins
241
Growth factors for platelets
Thrombopoietin
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Stein berg sign
Thumb test
243
Walker murdoch sign
Wrist test
244
What is a lacuna in relation to cartilage
Depression that a chrondrocytes sits in
245
Slipped epiphyses what is it and what causes it
Epiphyses of femur slips downwards down the bone | Obesity, trauma, inflammation
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Perthes disease
Poor blood supply to the femur so the femur head cells die.
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Dolor
Pain
248
Rubor
Redness
249
Calor
Hotness
250
Tumor
Swelling
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Functio laesa
Loss of function
252
T1 what colour is water
Black
253
T2 what colour is water
White
254
Functions of the skin
``` Protection and repair Vitamin D synthesis Sensation Absorption Temperature regulation ```
255
Factors that affect the normal range of values for homeostasis
``` Age Sex Diet Smoking Ethnicity Exercise ```
256
What does serum bone alkaline phosphatase do?
Enzyme decreases over time. | Regulates bone mineralisation so bone density decreases.
257
What causes an increase in potassium entering the cell
Insulin level increase
258
Name a local anaesthetic
Lidocaine
259
What does atropine do?
Treats nerve gases and pesticide poisoning by blocking the mACh receptor which prevents excess ACh production.
260
Clinical signs of thyrotoxicosis
``` Weight loss Heart palpitations Anxiety Muscle weakness Fatigue Hair loss ```
261
What drugs can treat thyrotoxicosis?
Propranolol binds to beta adrenoceptors and reduce heart rate and anxiety Thianomides which stop thyroid from producing excess hormones.
262
What effect does 0% first pass metabolism have?
Higher drug absorption so more reaches the hepatic blood supply
263
What effect does a higher gut wall metabolism do?
Lower passage into the hepatic blood supply.
264
Increasing the volume of distribution of the drug does what?
There is a decrease in concentration of the drug.
265
What does omeprazole do?
Treatment of GI reflux disease | Reduces stomach acid and treats heart burn and indigestion
266
What does warfarin do?
Blood thinner | Anti coagulant
267
What does verapamil do?
Treats high blood pressure | Angina and tachycardia
268
What does an increase in vd do to half life
Increases it
269
What does a low clearance level do to the half life
Longer half life
270
Define limit of resolution
The smallest distance at which 2 objects can be separated and still be distinguishable as 2 separate objects.
271
What is a curettage?
Surgical scraping done under local anaesthetics to remove a sample of cells - endometrial sample
272
What is a pipelle?
Plastic tube with a sharp hollow needle which is inserted inside, twisted to get a sample - endometrial, kidney
273
Trans vascular
Passing a small needle into a blood vessel.
274
Frozen section
Surgical specimen frozen to -20 to -30 degrees. This is then cut using a cryostat. Stained with h and e Sample is faster than if fixed
275
Indirect immunohistochemistry
Antibody complementary to the protein is added. Then another antibody is added that is complementary to the previous antibody. This has an enzyme attached with converts a clear substance into a colourful product. The presence of the colour shows the protein is present. The sample must be washed each time to remove unattached antibodies.
276
What is immunofluorescence
An antibody complementary to the protein is added with a fluorescent tag. When light shines onto it it produces a signal.
277
What is a confocal microscope?
Laser excites a fluorescent dye and electrons are raised to a higher level. As the electrons decrease back to their original level a light wave is emitted through mirrors and a pinhole which causes a sharp image when it reaches the detector.
278
Cell culture
Allows manipulation of the cells and experiments to determine the tissue function
279
Advantages of cell culture
Absolute control over the physical environment Homogeneity of sample Reduced need for animals
280
Disadvantages of cell culture
Hard to maintain Small amount grow at high cost Dedifferentiation can occur
281
Haematoxylin and eosin
Identifies most things
282
Massons trichome
Red = keratin and muscle Blue or green = collagen or bone Brown or black = nucleus
283
Periodic acid-Schiff stain
Identifies anything with a glycocalyx
284
How does an x ray give an image?
Focused beam of high energy electrons | These can pass through the body onto a receiver but some are absorbed or reflected
285
Advantage of x ray
Quick Portable Cheap Simple
286
Disadvantages of x rays
Radiation One plane - 2D Wont see all pathology
287
Fluoroscopy
Constant stream of x rays to examine anatomy and motion Contrast - barium sulphide , iodine
288
Advantages of fluoroscopy
Dynamic studies Cheap Interventional procedure
289
Disadvantages of fluoroscopy
Radiation Clinical exposure must be minimised
290
Uses of fluoroscopy
Angiography Arthrograms Screening in theatres
291
CT scans
Rotating gantry X ray tube on one side and the detector on the other Images put together by a computer
292
Advantages of CT scans
Quick Good spatial resolution Can scan most areas
293
Disadvantages of CT scans
Radiation Lower contrast resolution Affected by artefacts Overuse Requires breath to be held.
294
PET scans
Radionuclides that decay by positron emission bind to glucose. PET camera detects where decay occurs. Larger signal more decay.
295
Advantages of PET
Performed instead of biopsy Low radiation dosage
296
Disadvantages of PET
Radiation exposure Expensive
297
MRI
Strong magnetic field aligns hydrogen atoms Some point upwards and som downwards Radio frequency pulse applied Unmatched ions absorb energy and rotate to the opposite direction Pulse is turned off so untaxed ions rotate back to their original position and release energy. Computer creates an image.
298
MRI advantages
No radiation Good contrast resolution
299
Disadvantages of MRI
Expensive Time consuming Loud Claustrophobic Need to lie still No metal
300
Ultrasound
High frequency waves from transducer probe The sound wave is reflected back by tissue where density differs Probe detects reflected sound waves and a signal is created Can determine distance and density
301
Advantages of ultrasound
Lack of ionising radiation Low cost Portable
302
Disadvantages of ultrasound
Operator dependant No bone or gas penetration
303
Why use contrast?
It helps better differentiate tissues | Can allow motion to be detected
304
Common contrasts used
Barium sulphate Iodine
305
When and where do somites first appear?
Day 20 in the occipital region
306
Definition of a gland
An epithelial cell or aggregate of epithelial cells that are specialised for the secretion of a substance
307
Simple tubular example
Intestinal
308
Simple branched tubular
Stomach
309
Simple alveolar
Urethra - male
310
Simple branches alveolar
Sebaceous
311
Compound tubular
Duodenal
312
Compound alveolar
Mammary
313
Compound tubuloalveolar
Salivary
314
Extracellular matrix
Fibres and ground substance
315
Ground substance
Viscous clear substance - high water content | Composed of proteoglycans - large central protein with GAGs bound
316
Parotid gland
Dark purple in h and e Striated Bilateral salivary gland Cells replaced by adipocytes
317
Submandibular gland
Mixed serous and mucous | Striated
318
Functions of the liver
Storage of vitamins Anabolism Catabolism Bile production
319
Innervation of smooth muscle
Varicosities release neurotransmitters which open gated calcium channels causing an influx. These bind to calmodulin to form calcium calmodulin complexes. This binds to MLCK where it allows phosphorylation of myosin so it can contract. It is then dephosphorylated by phosphatase and myosin becomes inactive again.
320
Purkinje fibres
Specialised conducting fibres composed os electrically excitable cells. Lots of mitochondria
321
Sliding filament model
Tropomyosin coils around the actin filament reinforcing it Troponin complex attached to each tropomyosin Myosin heads extend towards filaments in regions of potential overlap When calcium binds to TnC of troponin a conformational change occurs This moves tropomyosin away from actin binding site. This allows the power stroke to occur.
322
Red bone marrow
Full of developing blood cells Rich blood supply Only found in spongy tissue
323
Function of red bone marrow
To replenish cells in the blood
324
Yellow bone marrow
Full of adipocytes | Poor blood supply
325
Function of yellow Bon marrow
Shock absorber Energy source Can convert to red marrow
326
Where do red blood cells degrades?
Liver or spleen
327
What happens to the spleen if someone has sickle cell anaemia?
Enlarged as it needs to take up more cells as more are defective.
328
Red blood cell structure
Biconcave No nucleus No mitochondria Anaerobic respiration
329
Erythropoiesis
Erythroblasts start of with large nucleus | Gradually shrinks and is removed with the RNA present
330
Reticulocytes
Before the erythrocytes mature a small amount of RNA remains for the production of haemoglobin High number of these cells are present after blood loss.
331
Erythropoietin
Glycoprotein produced by the kidneys to increase levels of red blood cells. Produced in response tissue hypoxia.
332
Granulocytes
Granules present in their cytoplasm Acts to mediate inflammatory reactions Release cytokines, interleukins which recruit other immune cells.
333
Neutrophils
Multilobed nucleus Most abundant granulocyte Phagocytosis
334
Basophils
Release histamine to trigger inflammation Purple granules Granules contain histamine and heparin
335
Eosinophils
Fight parasitic worms | Red granules
336
Monocytes
Macrophage Phagocytosis Horse shoe shaped nuclei
337
Platelets
Biconvex shape No nucleus Contains vast amount of proteins and clotting factors
338
Thrombopoiesis
Unregulated by liver | Formed form megakaryocytes
339
B cells
Revolves around production of antibodies Can activate T cells Mature in bone marrow and then move to intestine - peyers patches - spleen, lymph nodes.
340
T cells
Kills virus infected cells, cancerous cells and transplanted cells. Activate b cells to create antibodies Start in bone marrow but mature in the thymus
341
What is a membrane potential?
The difference in electric potential between the interior and exterior of the cell that is separated by the membrane.
342
Ligand
Something that binds to a receptor
343
Affinity
The degree to which a substance binds to another | Lower Kd = high affinity
344
Efficacy
The ability of a drug to have a desired effect
345
Potency
The concentration of a drug to give a desired effect | EC50 lower = higher potency
346
Intrinsic efficacy
the drug’s ability to activate a receptor
347
Carnitine shuttle
Transports fatty acts-CoA Acetyl-CoA binds with carnitine to form acyl-carnitine which moves into the matrix of the mitochondria by the carnitine shuttle transporter where it combines with CoA to reproduce acetyl-CoA.
348
What inhibits carnitine shuttle?
Malonyl CoA
349
What is CoA derived form?
Vitamin B5
350
Protein kinase
Transfer the terminal phosphate from ATP to -OH group of some amino acids
351
Protein phosphatase
Reverse effects of kinases by catalysing the hydrolytic removal of phosphoryl group form proteins
352
Proteolytic activation
Inactive precursor molecules - zymogens Involves breakage of peptide bond - irreversible For examples - blood clotting
353
Zymogens
Inactive precursor molecules - enzymes | Trypsinogen
354
Role of creatine phosphate
In muscle cells creatine + ATP is produced form creatine phosphate and ADP. When the concentration of ATP is high the drive for the synthesis of creatine phosphate increases. ATP can then be regenerated later. Small store of energy
355
Lipid classes
1. Fatty acid derivatives 2. Hydroxy-methyl-glutaric derivatives 3. Vitamins
356
What is metaphase spread?
View chromosomes Stained metaphase chromosomes Actively dividing cells are needed.
357
What is the relationship of the pK values and the pH?
pH is lower than pK value then the R group is protonated pH is higher than pK value then the R group is deprotonated
358
What is the isoelectric point?
The pH at which there is no overall net charge
359
What is the pI value across the basic and acidic proteins?
Basic proteins have a pI value higher than 7 | Acidic proteins have a pI value lower than 7
360
What is the relationship between the pI value and the pH value?
If the pH is lower than the pI it is protonated | If the pH is higher than the pI it is deprotonated
361
What are conjugated proteins?
where other components are covalently linked to amino acids.
362
Physical features of amino acids that may impact folding
Aromatic | Aliphatic
363
Chemical features that may impact folding
Polarity Hydrophilic or phobic Acidic or basic
364
How to disulphides bonds form?
the sulphydryl groups on the cysteine amino acid are oxidised to form a sulfur to sulfur bond or a disulphides bond
365
Why are disulphides bonds significant
they are important in the active site of many enzymes and are present and stabilise extracellular proteins such as albumin
366
What is an amyloid fibre?
the misfolded insoluble form of a normally soluble protein
367
Why use PCR?
To amplify a specific DNA fragment To investigate single base mutations To investigate small deletions or insertions To investigate variation
368
What is PCR?
Amplification of a target DNA Temperature cycles of denature, anneal, polymerase. Pair of primers (forward and reverse) which define the region that is copied.
369
What is RT-PCR?
To determine if a gene is expressed - diet ti on of mRNA. | mRNA is converted back to cDNA by reverse transcriptase.