fMRI Experimental Design Flashcards
(40 cards)
What is the purpose of an experimental control?
Removing the effect of confounding variables
e.g., testing the effect of a drug: active drug vs placebo drug
What are the types of statistical inference?
Between-group comparisons
Within-group comparisons
Linear regression/association
Mixed designs
Advanced methods e.g., multivariate analysis, real time fMRI
What is the difference between a between-group comparison and a within-group comparison?
Between-group comparison ==
Independent-sample t-test
i.e., Two groups of pps are recruited (patients vs healthy adults)
Every subject experiences only 1 condition
Within-group comparison ==
Paired-sample t-test
i.e., same pps assigned to two conditions (experimental and control condition)
What is a mixed design?
Two groups and two conditions e.g., baseline and follow up (within), active drug and placebo (between)
What are the different types of fMRI experimental designs?
Task-based fMRI - BOLD signal during a certain task
Task-free fMRI - BOLD signal in the absence of a task
Block design
Event related design
What is a block design?
Consists of several discrete epochs of on-off periods, with the ‘on’ representing a period of stimulus presentations, and the ‘off’ referring to a state of rest or baseline
These blocks are alternated throughout the experiment to ensure that signal variation from small changes in scanner sensitivity, subject movement or attention shifts have a similar effect on the signal responses associated with each of the different states
What is event-related design?
Each task is presented individually for a short amount of time e.g., 3s
In this way, tasks can be more randomised, rather than being blocked together by condition
What is the best control condition for a sub-vocal word reading experimental condition?
Sub-vocal pseudoword reading
Experimental condition = BRAIN, LATHE, HOURGLASS
Control condition = ARBIN, HETAL, SHOLGARUS
this is better than nonwords - they are pronounceable, and look like they could be real words
What can we measure using fMRI task-free designs?
When we do ‘nothin’ we normally engage in forms of introspective and abstract forms of cognition which can be measured in fMRI
e.g., remembering, prospection (looking forward to the future), theory of mind
What are fMRI task-free designs/resting-state fMRI used to study?
To study the correlations among regions
== Functional connectivity of brain networks
What is region based functional connectivity?
Pick a region of interest
Calculate a mean time course of the entire area
What are the areas whose activity correlates with the average time-course of this area?
Cross-sectional/longitudinal/correlational studies
What is a correlational design?
Investigates relationships between variables without the researcher controlling or manipulating any of them
A correlation reflects the strength and/or direction of the relationship between two variables
Why do you need to be cautious with correlational studies?
Due to spurious correlations - where two variables are statistically related/correlated, but there is no causal link between them
What causes spurious correlations?
Often caused by a third variable that is not being accounted for (confounding variable)
What is a mixed design?
A study that combines features of both a between-subjects design and a within-subjects design
What are the advantages of MRI?
- Versatility (structure and function)
- Simple statistics
- In vivo methodology
- Longitudinal designs - can repeat scans overtime due to lack of harm (like radiation in x-rays)
- Relatively safe and cheap compared to other techniques
What are the limitations of MRI?
- MRI is rather devoid of biological information - techniques are rather distant from what is actually happening at the biological level
- Temporal resolution is ‘suboptimal’
- Counter-indications
- Metal
- Pregnancy
What is real-time fMRI?
Real-time fMRI relies on very rapid data transfer and analysis within a few seconds of data collection
What are the applications of real-time fMRI?
Used clinically for conditions such as locked in syndrome where the patient has full capacity but it paralysed
Novel brain-machine interface
Coupling of the contents of conscious experience and brain activation
Planning neurosurgical interventions
Neural feedback
Using real-time fMRI what can the BOLD signal be used as?
Using the BOLD signal from the brain as feedback to control localised neural activation
- Nonpharmacological therapy e.g., for patients with affective disorders
- Overcomes limitations of other feedback methods e.g., skin conductance responses and EEG
- Directly targeting specific brain regions with superior spatial resolution
What is a neurofeedback paradigm?
fMRI neurofeedback is a type of biofeedback in which real-time fMRI signals are used to self-regulate brain function
fMRI neurofeedback techniques use multivariate analysis of a particular brain region to induce a specific activation pattern in the targeted region
How can neurofeedback paradigms be used as treatment for people with depersonalisation disorder?
Cannot read other people’s emotion
Have impairment in the anterior part of the insular and underactivation of this area
Can use neurofeedback to increase the activation of the anterior insular cortex
If we can feedback the information from the brain region to the patient in real-time, we can ask them to try two different mental strategies which will increase that brain region’s activation
What is the setup of neurofeedback in fMRI?
- First have to identify the experimental ROI (area where you want to increase activation)
- Also choose a control region (somewhere we know is not involved with the task)
Why is a control region needed for real-time feeback?
We don’t want people to increase or decrease their BOLD response globally across the brain e.g., holding their breath, we want to specifically change the experimental brain region
Therefore, we need to have a control region to look at the difference between the ROI and control region
INCREASE BLOCK=
ROIexp(BOLDincrease - BOLDdecrease) - ROIctrl(BOLDincrease - BOLDdecrease)
DECREASE BLOCK =
ROIexp(BOLDdecrease - BOLDincrease) - ROIctrl(BOLDdecrease - BOLDincrease)