Fundamentals of Magnetic Resonance Flashcards

1
Q

What is nuclear spin?

A

Nuclei have an intrinsic total angular momentum - the operator for nuclear spin is a bold captial I with a hat to show it is a vector and an operator

The nuclei spin quantum number (total angular momentum quantum no.) is I with units bof angular momentum per nucleus

Total angular momentum is measured in units of ħ (h/2π)

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2
Q

What is Planck’s constant?

A

a fundamental quantity that is equal to the energy per unit frequency of a quantum of electromagnetic radiation

E = hv = ħω

h = 6.626 x 10-34 J/Hz

ħ = h/2π

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3
Q

What values can nuclear spin take?

A

Can be an integar or half integar

When protons = even and neutrons = even and mass number is even the spin is 0

When protons = odd and neutrons = even and mass no = odd the spin is half integar

When protons = even and neutrons = odd and mass no. = odd the spin is half intear

When protons = odd, neutrons = odd and mass no. = even the spin is an integar value

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4
Q

What is total angular momentum?

A

A vector

I = {Ix, Iy, Iz}

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5
Q

What are the eigenvalues and eigenfunctions of Iz?

A

Izψm = mħψm

ψm - eienfunction

mħ - eigenvalue

m - quantum number for Iz

The number of values of m are 2I + 1

the values of m are {-I, -I+1 …… +I}

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6
Q

What is the nuclear magnetic momentum?

A

Nuclei with nuclear spin have a nuclear magnetic moment μ (with a hat)

μ = {μx, μy, μz) - vector operator

μ is proportional to anuglar momentum: μ = γI

γ is the constant of proportionality - gyromanetic ratio which is a property of the nucleus measured in rad s-1 T-1 (or MHzT-1 if it is γ/2π)

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7
Q

What is the Zeeman interaction?

A

The interaction between the nuclear magnetic moment and anyapplied magnetic field B0

The energy of this interaction is described by the Zeeman Hamiltonian Hz

  • H*z = -μ x B = -γI x B = -γB0Iz
  • H*z is the Zeeman Hamiltonian, μ is the magnetic moment, B is the field vector, I is the angular momentum, γ is the gyromanetic ratio, B0 is the applied magnetic field defined in the z direction, Iz is the z component of the angular momentum
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8
Q

How do we find the eigenvalues and eigenfunctions of the Zeeman Hamiltonian?

A

Solve the time-independent Schrodinger equation: Hzψ = Eψ

  • γB0mħψ = Eψ
  • γB0mħψm = Emψm

Eigenfunctions: ψm

Eigenvalues: Em = -γB0

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9
Q

What is the difference in energy between the two spin states?

A

|ΔE| = | (-1/2γB0ħ) - (1/2γB0ħ) | = γB0ħ

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10
Q

What is the frequency of energy required to make a transition between ther spin states?

A

ΔE = γB0ħ

ΔE = ħω

.’. γB0ħ = ħω - cancel the ħ

γB0 = ω (rad s-1)

This is the Larmor frequency

ω is different for different nuclei in the same field

ω is the same for higher spin nuclei

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11
Q

What is the selection rule for NMR and why?

A

Δm = ±1

so that the Larmor frequency is the same for all values of I

The Larmor frequency of 1H is 42.577 (γ) x 9.4 (B0) = 400 MHz

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12
Q

Why do nuclei of the same type in different chemical environments have different Larmor frequencies (why does chemical shift change)?

A

The electron density around the nucleus generates a weak induced magnetic field at the nucleus

Bind = -σiB0

Bind is the induced field, σi is the isotropic shielding constant and B0 is proportional to the main field

The -ve sin means the induced field is in the opposite direction to the main field

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13
Q

What is the effective field felt by each nucleus?

A

The sum of the applied field, B0, and the induced field, Bind.

Beff = B0 + Bind = (1 - σi)B0

The larmor frequency is proportional to the local field at the nucleus - Beff

ω = γBeff = γ (1 - σ) B0 = (1 - σi) ω0 where ω0​ is the shift in the larmor frequency

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14
Q

Why do we use ppm?

A

The isotropic chemical shift parameter σi is a chemical property but the Larmor frequency that is measured is an experimental property because it depends on the exact B0

ppm is a standard way to describe chemical shifts that is independant of the applied field

ppm is a relative scale - a fraction of the Larmor frequency

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15
Q

How do we define chemical shift in ppm?

A

For 1H and 13C chemical shift is defined in terms of TMS as δ = 0

All chemical shift is measured relative to a reference compound

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16
Q

How do you convert ppm to frequency in Hz?

A

Multiply the chemical shift by the reference frequency in MHz

relative frequency = chemical shift (ppm) x Larmor frequency (MHz)

(v - vref) = δ x vref (MHz)

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17
Q

How do you calculate the difference between two peaks in Hz?

A

Take the differencebetween peaks in ppm and multiply by the reference frequency

Δv = (δ1 - δ2) x vref (MHz)

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18
Q

What is the difference between an NMR experiment and an MRI test?

A

In a normal NMr experiment a very homogenous magnetic field is used to make sure all nuclei experience the same field and small differences in the Larmor frequency due to chemical shift can be detected

In MRIs we deliberately apply a magnetic field that varies as a function of position - magnetic field radient Gx and has units of T m-1

Btotal(x) = B0 + Gx

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19
Q

What do we obtain if a magnetic field gradient is used on an NMR experiment?

A

An image of the sample is obtained because the Larmor frequency is directly proportional to the position of each nucleus

ω(x) = γBtotal(x) = ω0 + γGxx

where ω is the Larmor frequency which depends on position and x is the position

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20
Q

What is the probability of a nucleus being in a spin state ψm?

A
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21
Q

How do we determine how many nuclei are in each spin state?

A

Using Boltzmann statistics

Nuclei populate both energy states almost equally

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22
Q

What is nuclear polarisation, P?

A

The difference in population between the spins states

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23
Q

What is the energy level picture for NMR?

A

useful way to think about frequencies in an NMR spectrum

Cannot think about NMR in terms of nuclei in the ground state being excited to a higher state then relaxing to ground state

Transition between the states are continuous even in equilibrium

There is a slightly higher probability for transition from -1/2 to 1/2 so a equilibrium there is a population imbalance with an excess of spins in the low energy state

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24
Q

Is NMR relaxation provide the NMR signal?

A

Relaxation estabilishes the population difference but does not gve rise to the NMR signal

Not enough absorption for detection- requires resonance amplification

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25
What is a vector and how are they defined?
Quantities that have a magnitude and a direction - we define a vector in terms of a coordinate system
26
Which coordinate systems can be used for defining vectors?
Cartesian and cylindrical In cartesian coordinates the mantgetic moment has components along the x, y and z In cylindrical the magnetic moment is divided into two components μz, μx,y and a phase φ μz = μz - longitudinal coordinates μx = μx,ycosφ μy = μx,ysinφ
27
How does the magnetic moment interact with the magnetic field?
The magnetic moment interacts with the applied magnetic field B0. This interaction generates a torque (τ) - tisting force acting perpendicular to the gravitational field τ = **μ** x **B** = γ**I** x **B**
28
Where does the torque come from?
The torque comes from the cross product between the magnetic moment and the field It acts in the direction that is perpendicular to both the magnetic moment and the field This causes the nuclear magnetic moment to rotate or process around the field
29
What is the frequency of the procession of the magnetic moment?
The frequency of the procession is the Larmor frequency ω = γB0
30
What happens to the nuclear spins in the absence of a magnetic field?
There are millions of nuclei in a sample THe associated magnetic moments are randomly oriented The Zeeman states are degenerate with no preference for any particular direction There is no net magnetisation - the magnetic moments cancel each other out
31
What happens to the nuclei when a magnetic field is applied?
Interaction between the magnetic moments and magnetic field causes procession Slight preference to point with the field In cylindrical coordinates: Component along the z axis is Mz - sum of all magnetic moments just along B0 Component in the xy plane: Mxy with phase φ - sum of magnetic moments in the xy plane
32
How do we find the net magnetisation along the z axis?
There is a slight preference for magnetic moments to be aligned with the magnetic field rather than against it due to Zeeman interactions The excess of spins in low energy state is the polarisation
33
What is the equation for total magnetisation along the z axis in general?
34
What is transverse magnetisation?
The magnetisation in the xy plane Has boith magnitude, Mxy, and direction (phase: φ) Each magnetic moment precesses around the magnetic field at the Larmor frequency
35
What is the phase of each manetic moment in transverse magnetisation?
Each magnetic moment is a vector changing with time φ(t) = φ(0) + ωt where φ(0) is the initial phase at t=0 and ωt is the procession phase that changes with time
36
How is the magnetisation vector written in terms of exponentials and complex numbers?
M0exp(*i*φ) = M0 cosφ + *i* M0 sin φ where M0 is how big the circle is, *i* is the imaginary component and φ is the ohase Mxy = M0exp (*i* φ(t)) = M0exp(*i* (φ0 + ωt) = M0exp(*i* φ0) exp(*i* ωt) where M0exp(*i* φ0) is the initial phase and exp(*i* ωt) is the time dependent part (procession) If all the nuclei process at the same frequency how they add up depends on their ohase - the direction they point in at a point in time t=0
37
What is phase coherence?
At equilibrium entropy tells us here is no reason for the nuclei to process in phase with one another If we add up all the nuclei with random phases on average they cancel out There can only be net magnetisation in the xy plane if there is phase coherenec Phase coherence is when the nuclear magnetic moments precess in sync with one another with both the same frequency and the same initial phase
38
Which direction does the total magnetisation lie in at equilibrium?
The sum of all the magnetic moments is along the z axis (same direction as field Mz = M0 Mxy = 0
39
What happens if the magnetisation vector is rotating?
It will generate an alternating current in an approximately oriented coil of wire through a proces called induction The current will oscillate at the same frequency as the rotaring magnetisation vector The oscillating voltae provides a signal
40
How does rotating the magnetisation vector affect the nuclei?
Magnetic moments are precessing in sync so that they add up in the transverse plane The longitudinal magnetisation is destroyed and so this must mean the energy levels are populated equally
41
What is the rotating frame?
A reference frame used to underrstand how the magnetisation vector is moved into the xy plane The z axis rotates at the larmor frquency so the magnetisation vector is static - does not precess x', y' and z' describe the axes of this frame The magnetisation vector doe snot rotate so it does not experience the B0 so B0 disappears- This only happens when frame is completely in sync with Larmor precession
42
What does the rotating frame look like at thermal equilibrium
43
How do we induce transitions between spin states?
Need to irradiate at the larmor frequency which is in the radio region We apply a magnetic field, B1, that oscillates at the Larmor frequency and is perpendicular to B0 -B1 is much smaller than B0 The magnetisation vector precesses around B1 - rotating frequency = gyromagnetic ratio multiplues by the the field B1 If the pulse is applied for the a given time we can rotate the M0 into the xy plane
44
How do we generate an RF pulse?
An oscillating voltage passed through a coil of waire will generate an oscillating magnetic field
45
What happens to the magentisation vector after the pulse?
After the pulse the magnetisation vector is in the transverse plane In the rotating plane it is now static In the lab frame is precesses around B0, main field
46
What is Free induction decay?
The coil of wire used to generate the RF pulse is used to detect the precession and aquire the NMR signal - this can only be done in the transverse plane as it is in the plane of the wire This is free (detect signal after the RF pulse) Induction (detection method) Decay (detection method)
47
What affects the amplitude of the NMR signal, S0?
S0 is proportional to: - amplitude of precessing magnetisation Mxy Mxy = Mzsinα where Mz is the initial magnetisation along the z axis and α is the rotation angle - precession frequency: Larmor frequency: ω0 = γB0 S0 ∝ ω0 x Mxy = (γB0) x Mzsinα Induction process is more efficient at higher frequencies
48
What are the factors affect the size of the NMR signal?
N = number of nuclei γ3 - gyromagnetic ratio cubed - polarisation, size magnetic moment, larmor frequency B02 - magnetic field squared - polarisation, larmor frequency sinα - sine iof the RF pulse angke - experimental T-1 - inverse of temp - experimental parameter
49
What is NMR receptivity?
a measure of how easy it is to detect the NMR signal of a given nucleus quoted relative to another nucleus - usually 1H or 13C for the same field (B0) and temeprature We compare the same field, temperature and flip angle: S0 ∝ Nγ3 I(I +1) where N is the no. spins (natural isotopic abundance) and I is the spin quantum number
50
What affects receptivity?
Ratio of natural abundance Ratio of gyromagnetic ratio cubed Size of magnetic moment Polarisation Amplitude of NJR signal per unit magnetisation (Larmor frequency)
51
What kind of relaxation are there?
Longitudinal T1 relaxation: along z, process that generates equilibrium population difference across the energy levels and hence estabilishes equilibrium along z axis Transverse T2 relaxation: the process that cause the transverse magnetisation to decay to zero. Transverse magnetisation comes from phase coherence. Therefore T2 relaxation causes Mxy to decay through dephasing - it destroys the phase coherence by randomising the phases of the spins - T2 ≤ T1
52
How is the longitudinal relaxation described?
described by a rate equation
53
How does rate of change of longitudinal magnetisation change?
is proportional to the difference between the current polarisation and the equilibrium polarisation The further from equilibrium the faster the rate of change
54
How does magnetisation along z affect Mz
If magnetisation along z is smaller than M0, Mz increases with time due to T1 relaxation - this is the case immediately follwing an RF pulse - want short T1 - generates magnetisation quickly If Mz is larger than M0 (hyperpolarisation), then Mz will decay with time due to T1 relaxation - want long T1 to keep hyperpolarisation
55
How long does it take to reach recover equilibrium using T1 relaxation?
5T1 The key role of T1 is the determination of the time it takes to establish equilibrium magnetisation along z
56
What is the time between each RF pulse called?
The TR time (repetition time) - 2T1 This means full equilibrium is not achieved along z before a futher RF pulse makes it 0 again - The magnetisation observed is called Meff
57
How is the observed magnetisation, Meff, related to the equilibrium magnetisation, M0 and T1 relaxation?
The observed magnetisation will be proportional to T1?
58
What happens if species have different T1 within a sample and how lon does TR need to be to remove weighting by T1 in the intensity the peaks?
Integrals depend on T1 TR \> 5T1 - longest T1 in the sample
59
What is the transverse rate equation?
The change in the transverse manetisation per unit time is directly proportional to Mxy
60
What is T2 relaxation characterised by?
the T2 time constant
61
What causes T2 relaxation
Mxy comes from phase coherence - decay of Mxy is due to the loss of phase coherence (dephasing) In order for two spins to precess in sync at all points in time they must have bioth the same initial phase and be precessing at the same frequency
62
What does the T2 time constant describe?
the effects of irreversible dephasing that is caused by changes in the initial phase associated with spin transitions Mxy can also decay by reversible dephasing which comes from nuclei experiencing different Larmor frequencies Nuclei could experience different local magnetic fields due to: magnetic field inhomogeneity of the spectrometer itself ir differences in the magnetic suseptibility which induces inhomogeneity
63
What are the equations for the observed decay of transverse magnetisation?
64
What is the effect of T2 relaxation on NMR peaks?
Short T2 relaxation times leads to broad peaks - reduced resolution and sinal noise
65
What is shimming?
The process of improving the homogeneity of B0 by applyin small additional fields to camcel out small variations across the sample
66
What is the nuclear Hamiltonian?
The energy operator associated with nuclear inetractions Often given in frequency units (rad s-1 or Hz) The constant of proportionality between two units is Planck's constant
67
Whatb is chemical shift?
Indirect magnetic interaction with B0 mediated by electrons 100 - 1000s Hz field dependant (ppm)
68
What are dipole dipole coupling?
Direct manetic interaction between two nuclei (magnetic moment). Through space Depends on orientation Typically 10s - 1000s of Hz
69
What is J coupling?
Indirect interaction between nuclei meadiated by the electrons Works through bonds Field independant Usually 200 Hz
70
What is a quadropolar interaction?
Only applies when I \> 1/2 Interaction of electric quadropole moment of spins reater than 1/2 electric field gradients around the nucleus (can be MHz)
71
Which interactions have the greatest effects?
Zeeman \> Quadropolar \> dipole dipole \> chemical shift \> J coupling
72
What affects the J coupling constant?
the angular momentum operators for both spin states: **I**A and **I**B The product of the angular momentum for spin A and B: HJ = JAB **I**A x **I**B = JAB(IxAIxB + IyAIyB + IzAIzB)
73
What are the characteristics of the J coupling?
Guven in Hz and are independent of field Proportional to the size of each magnetic moment and depend on the product of the gyromagnetic ratios of the spins Coupling constants are sensitive to bonding because it depends on shared electron density - dependent on the number of bonds and bond angles - info on structure J coupling acts throiugh bonds and can be heteronuclear or homonuclear
74
What is ther selectiopn rule for which transitions are observed in NMR?
Only observe single quantum transitions
75
For a two spin system which spin transitions are possible?
76
Which transitions in a two spin system are observed?
Active spin - spin that flips PAssive spins - do not change Peaks occur at the chemical shioft of the active spin
77
What happens if the frequencies of the two atoms are the same?
This is called chemical equivalence - two spins with the same chemical shift You get a singlet
78
Where is J coupling observed?
Often only pbserved between chemically inequivalent nuclei but may be observed between two nuclei with the same chemical shift if they are magnetically inequivalent
79
How can J coupling change with chemical equivalence?
When two atoms are chemically eqivalent J coupling is not observed unless they are magnetically inequivalent When the two atoms are completely chemically inequivalent J coupling is observed and patterns can be determined through 2n + 1 rule - explained using active and passive spins When chemical equivalence is close coupling cannot be determined by the 2n+1 rule because J coupling interaction needs to be included in the hamiltonian
80
What is the equation for the chemical shift Hamiltonian?
*H*CS = -**I** x σ x B0 The chemical shift tensor can be can be divided into two parts: isotropic and anisotropic: σ = σi + σCSA The chemical shift Hamiltonian is a sum of the isotropic and anisotropic part: *H*CS = *H*iso+ *H*CSA = -σiIzB0 - **I** x σCSA x **B0**
81
Describe dipole dipole coupling?
Direct magnetic interaction between nuclear magnetic moments - nucleus A experiences the field of nucleus B and vice versa The interaction is through space and is used to obtain distance information but does not include structural information Can be calculated very precisely Position / orientation dependent No isotropic component and so is averaged to 0 in the solution state
82
When is electric quadropole moment present?
If I \> 1/2 nuclear spin will posses an electric quadropole moment eQ This interacts strongly with the electric field gradient (EFG) generated by the electron clouds
83
What affects quadropole coupling?
Electric quadropole moment, eQ - propoerty of the nucleus Electric field gradient - molecular property that depends on the molecular structure and local chemical environment If the environment is symmetric the gradient is small If the environment is asymmetric the gradient is large CQ ∝ eQ x EFG
84
How do anisotropic interactions show up on solid state NMR?
dipole dipole, anisotropic chemical shifts and quadropolar interactions give rise to broad peaks in solid state NMR Each molecule gives rise to a peak at a frequency that depends on the orientation of the molecule relative to B0 - In a powdered solid there will be a range of orientations - instead of a single peak for each resonance there is a there are broad peaks with patterns corresponding to different molecular orientations Peaks are analysed to extract parameters related to structure
85
How do anisotropic interactions show up in liquid state NMR?
In isotropic liquids molecules are constantly rotating and experience all orientations relatuive to B0 The timescale of tumbling is faster than anisotropic interactions These orientation depenedent interactions average to 0 giveing narrow lines where position of the peaks rely on J constants and the isotropic part of chemical anisotropic interactions still have an effect as they drive T1 and T2 relaxation
86
What drives longitudinal, T1 relaxation?
T1 establishes equilobrium population differnce between energy levels Spin flips need to occur This requires an exchange of energy with surroundings - energy comes from thermal energy in the form of molecular rotations
87
What drives transverse, T2 relaxation?
T2 causes the decay of transverse magnetisation due to irreversible dephasing of nuclei associated with spin transitions When a nucleus undergoes a spin transition it loses phase memory and no longer has the same phase as the others resulting oin dephasing
88
What relaxation methods do single quantum transitions drive?
Transitions between spin up and spin down for single spin Drives both T1 and T2 - changes population of energy levels and changes phase of the spin Requires exchange of energy between spin and environement Transitions caused by interaction between nuclei and local magnetic that fluctuate at Larmor frequency Local fields driven by spin interactions like dipole dipole and field fluctuations driven by molecular motion
89
What relaxation methods do zero quantum transitions drive?
Simultaneous transition of two spins 'flip flop' - no overall change in relative population of energy levels and energy is conserved - no driving T1 Changes phase of both spins = drives T2 Transitions caused by interactions between nuclei - size of interaction affects how much relxation results T2 ≤ T1
90
How does molecular motion affect relaxation?
Any molecular motion has a correlation time τC - fast motion = short correlation time Molecular motions are most efficient at causing single quantum transitions if the correlation time matches the Larmor frquency: ωτC = 1 Fast molecular motions average anisotropic interactions that cause zero quantum transitions The slower the motion the higher the probability of zero quantum transitions and the faster T2
91
What factors affect the time of T1 and T2?
Solvent viscocity Temeprature Size of anisotropic interactions MAgnetic field strength (Larmor frequency)
92
What is NMR relaxometry?
measurement of relaxation parameters Can be done in combination to give relaxation value for each resonance - protein NMR to give insight into local structure and dynamics Useful in detecting the strength of ligand binding to a target protein Can be done using cheap low field NMR devices
93
How is relaxation used in MRIs?
The contast in image is due to the concentration of water in an area and also due to differences in T1 and T2 relaxation
94
What is dipole dipole relaxation?
Direct interaction between neighbouring dipole moments - dominant in isotropic liquids Dependent on: distance between spins (1/r3) gyromagnetic ratio (generally low γ nuclei relax more slowly), Orientation of spins relative to B0
95
What is quadropolar relxation?
Relaxation depends on size of quadropolar interaction and local electric field gradient Coupling to quadropolar nuclei is rarely observed in liquid state due to rapid relaxation Very small electric quadropolarcoupling constants and eQ can show coupling - 2H
96
What is paramagnetic relaxation?
Paramagnetic species mlostly unsuitable for NMR due to interaction between nuclei and unpaired electrons are very efficienmt at driving relaxation Depends on symmetry, magnetic field strength and electron spin relaxation times and distance between nucleus and paramagnetic centre (∝ r-6)
97
What is magic angle spinning?
Technique used in solid state NMR to average anisotropic interactions to simplify data and recover isotropic chemical info Similar to motion averaging Rotation is applied at a fixed frequcy and a specific angle - 54.7° Due to symmetry dipole dipole and CSA are zero and quadropolar interactions are reduced