Gene expression Flashcards

(42 cards)

1
Q

What are two purines

A

Guanine

Adenine

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2
Q

What are the two pyrimidines

A

Thymine

Cytosine

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3
Q

What type of helical structure does RNA have

A

right handed

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4
Q

Is RNA more reactive or DNA and why

A

RNA- has 2’OH

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5
Q

What are all cellular RNA’s transcribed from

A

DNA templates

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6
Q

What is the production of RNA from DNA carried out by

A

DNA-dependent RNA polymerases

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7
Q

Whats the tole of RNA polymerase

A

Couples together ribonucleotide triphosphatases (NTPs: ATP, CTP, GTP, UTP)

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8
Q

Where does RNA polymerase work and what is it driven by

A

On DNA template

-driven by release and hydrolysis of PPi

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9
Q

What contains RNAP

A

All cells

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10
Q

Why is RNA synthesis easier in prokaryotes

A

RNA synthesis is initiated at DNA specific sites;

  • expression involves small, single stand genome portions
  • no primer needed and template fully conserved
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11
Q

what does the DNA serve as in prokaryotic transcription

A

Antisense/noncoding strand

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12
Q

What is the same sequence as sense/coding strand

A

RNA (except for T)

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13
Q

What are structural genes

A

Protein-coding genes

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14
Q

How are structural genes transcribed in eukaryotes

A

Transcribed individually

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15
Q

How are structural genes transcribed in prokaryotes

A

Transcribed together

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16
Q

where is transcription initiated

A

At a promoter

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17
Q

Where does RNAP bind

A

Initiation site through base sequence known as promoters

18
Q

Where do promoters lie

A

Lies upstream of RNA’s starting molecule

19
Q

In which direction does RNA synthesis proceed

20
Q

What does the binding of the RNAP holoenzyme lead to

A

DNA ‘melting’ (separation) in its vicinity (transcription bubble)

21
Q

What does the formation of. a transcription bubble allow

A

Allows complementary RNA strand synthesis

the bubble travels with RNAp

22
Q

What does a processive RNA polymerase mean

A

Does not dissociate from template

23
Q

When can protein synthesis begin before RNA is completely synthesized

A

In prokaryotes

24
Q

How is transcription terminated in prokaryotes

A

DNA contains specific termination sites

25
What does the RNA transcript form
A self complementary hairpin
26
What does the self complementary hairpin do
Causes RNAP to pause | -permits RNAP conformational change allowing termination
27
What does the transcriptional machinery in eukaryotes require
Over 100 polypeptides to function
28
How are RNAP's different in prokaryotes and eukaryotes
Greater mass in eukaryotes and greater subunit complexity
29
What are required for RNAP 2 transcription
General transcription factors
30
What are GTFs often targeted to and by what
TATA box by TATA binding proteins
31
What does RNAP 2 do
initiates RNA synthesis
32
After RNAP 2 initiates RNA synthesis, what does transcription machinery do
switch to elongation mode
33
What do eukaryotes lack
precise transcription termination sites
34
What does rifamycin B do
Inhibits only prokaryotic transcription | -prevents elongation
35
What does actinomycin D do
Binds to duplex DNA and inhibits DNA replication and transcription of eukaryotes and prokaryotes -It interferes with polymerase passage
36
What does alpha-amanitin do
Tightly binds to RNAP 2 and blocks the elongation step
37
What do eukaryotes display more of than prokaryotes
pre-mRNA processing
38
What is RNA capping
RNA polymerase contains a CTD. When phosphorylated it recruits the Capping enzyme complex which modifies the 5'end
39
What does capping provide
Resistance to degradation and id of translation start site
40
What is polyadenylation and what does it do
Part of transcription termination - influences mRNA stability - prevents degradation when in a complex
41
What carries out splicing
spliceosomes
42
What are snRNAs
small nuclear RNA's