gene therapy Flashcards

(55 cards)

1
Q

what is gene therapy

A

delivery of genentic material into a patients cells as a drug to treat diseases associated with genetic mutation/changes in gene expression

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2
Q

how can a gene mutation lead to disease (4)

A
  1. mutation in the promotor: increase or decrease in mRNA
  2. mutation in coding sequence: creation of different protein but this may be harmless
  3. mutation in splice site: production of incorrectly spliced mRNA (removal of introns)
  4. mutation in regulatory element: increase or decrease in protein production
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3
Q

what is the effetc of a mutation in coding sequence (exon)

A

can result in a different amino acid being incormpeated into the protein sequence leading to the formation of a mutant protein. This can be harmful or harmless

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4
Q

give an example of a disease where there is a mutation in the coding sequence and the resulting phenotype

A

sickle cell. there is a mutation in both copies of the beta-globin gene. It is autosomal recessive . Hemoglobin S forms instead of haemoglobin A - s is cresent shaped - impared transportation of oxygen. mutation is GAG to GTG - leads to glutamic acid instead of valine at position 6 in protein

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5
Q

define autosomal recessive

A

both parents need to be carrying the gene and pass it onto the child

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6
Q

what is a frameshift mutation

A

where deletion of substitution occurs in multiples of 3 (codon)

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7
Q

what is a nonsense mutation and what is the result

A

premature termination codon = truncated protein

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8
Q

what is the effect of a mutation in the promotor region

A

this leads to changes in gene expression. The binding of the transcripton factor will be varied due to a different site. It will be recognised differently. This will effect gene expressn

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9
Q

what is the effect of a mutation in the control element

A

This is where a mutation leads to changes in the regulation of expression by splicing trans-acting factors (Regulatory proteins that control gene expression).

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10
Q

what are trans acting factors

A

Regulatory proteins that control gene expression. They bind to DNA to influence transcription of genes

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11
Q

whta must gene therapy be able to do

A

target the correct cells, act for long enough whilst not compromising cell funtion

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12
Q

what is the therpy Glybera used for

A

treats rare metabolic diseases that causes pancreatitis, LPLD (
Lipoprotein lipase deficiency)
works via the delivery of the LPL gene

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13
Q

what are some of the challanges of glybera

A

delivery to correct target cell, maintenence of delivered gene in target cell, high cost of drug development.
it is only suitable for diseases that are caused by reduced production of a protein product. We therefore cant achieve a precise level of expression of a delivered gene so it is only useful if the level of expression does not matter

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14
Q

describe ex vivo gene delivery

A

take the target cells out of the patient. introduce the gene and then return them to the patient. allows precose targeting and increased efficiency

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15
Q

describe in vivi gene delivery

A

Introduce the gene directly into the patient into the target tissue. eg aerosol delivery if target is lungs

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16
Q

describe the differences in viral vs non viral delivery

A

viral delivery leads to more effieicnt uptake than non viral. There is higher selectivity for specific cell types and the effect can persist in cells for much longer. However there is higher risk of immune response, and there is a limit on the size of the gene that can be incorporated compared to non-viral

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17
Q

why may viral delivery be used

A

target and attach to specific cells
transport genetic material directly to nucleus and maintenance as DNA
Sustained expression of genetic material over time

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18
Q

what type of viruses are used for viral delivery

A

adeno-associated virus, DNA virus, lentiviruses, retroviruses

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19
Q

what are lentuviruses

A

A type of retrovirus. these are highly modified viruses such as HIV, They allow incorpration of a delivered gene into the host genome and therefore genetic expression is maintained during cellular activity. They can integrate into both dividing and non-dividing cells

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20
Q

what is AAV (viral delivery)

A

non-pathogeic, low immunogenicist. they cna infect dividing and non-dividing cells. They cannot replicate without the use of helper viruses. They are very small so the size of the gene is limited

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21
Q

what is CAR-T immunotherapy

A

form of adoptive cell transfer. T cells are taken from a patient and genome is engineered to produce chimeric antigen receptors - recognise antigens on cancer cells. return these cells to patients and allow then to multiply and kill cancer cells.

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22
Q

what are some of the key issues associated with CAR-T therapy

A
  • cytokine storm can occur
  • solid tumour - harder to target
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23
Q

describe how gene therpy has been used for heamophillia

A
  • blood clotting disorder caused by lack of clotting factors. x linked recessive inheritance
  • Gene therapy for hemophilia involves delivering a functional F8 or F9 gene to hepatocytes using adeno-associated virus (AAV) vectors. This single infusion enables endogenous production of factor VIII (FVIII) or FIX protein, reducing bleeding in patients.
24
Q

what is genome editing

A

modification of genomic DNA

25
What are some examples of genome editing technologies
CRISPR/cas9, TALENS, meganucleases
26
what is CRISPR/Cas9 - genome editing
CRISPR comes from a proaryotic immine system that has been repurposed to allow site-specific genome modification in mammalian cells
27
what are some of the limitations with CRISPR/Cas9
- off target effects - less efficient at engineering in a prescice nucleotide seq - ethics of genome mod
28
what is cas9 protein
endonuclease that introduces a double strand break into DNA when recruited by sgRNA
29
how does CRISPR/cas9 work?
guide RNA (CRISPR) binds to the complementary sequence - opens up DNA CAS9 cleaves both strands of DNA at a targetted site Genomic modification occurs - insertions or deletions Non-homologous end joining or homology directed repair takes place
30
what elements are needed for CISPR/cas9
- protein - cas9 - can be delivered therapeutically as DNA, mRNA, or protein - RNA - delivered as DNA or RNA - this is CRISPR
31
Compare gene modification in somatic vs germline cells
somatic: changes to the genome in any cell other than a gamete or an undifferentiated cell type. This results in permanent changes in genomes and cannot be passed on to offspring. Delivery and maintenance can be difficult germline: changes to the genome in germ cells or early embryos - passed onto an individual's descendants - has the potential to eliminate inherited disease, but ethically difficult to justify - controversial.
32
why is genome editing in embryos currently not practical
high chance of off target effects inefficient disease causing mutations can already be avoided pre-implantation in IVF - screening different legal and ethical frameworks worldwide
33
What are antisense oligonucleotides?
Antisense oligonucleotides (ASOs) are short, synthetic strands of RNA or DNA designed to bind specifically to complementary RNA sequences. They play a crucial role in modulating gene expression by targeting messenger RNA (mRNA) to alter its function, which can lead to the degradation of the mRNA or inhibition of its translation into protein. ASOs have potential applications in treating various conditions, including genetic disorders, viral infections, and certain cancers, by selectively silencing genes associated with these diseases. Their mechanisms of action include ribonuclease H-mediated decay of mRNA, steric blockage, and modulation of splicing.
34
2 modes of action of antisense technology
1. prevents protein or RNA regulators from interaction = steric block 2. introduces RNA degrdation by RNAse H recruitment
35
what is antisense technology
Introduction of an oligonucleotide complementary to the mRNA of interest
36
what does chemical modicication of the bases/ backbone of the antisense oligonucleotide do in antisense technology
imporove RNA binding, imporve entry into cells, protect from nuclease degradation
37
how can antisense technology be used to modulate gene expression
steric block: oligonucleotide mask sequence that would be recognised by a splicing factor promotes exon inclusion ot skipping. inhbits or alters protein rna degradation: RNase H (endonuclease) cleaves RNA at RNA-DNA hybrids. reduces protein production
38
antisense technology: how is splice modulation used for SMA - spinal muscular atrophy. caused by recessive mutation loss of moto neurons
spinal musculat atrophy (SMA) - caused by autosomal recessive mutation in SMN1 gene = lack of SMN protein production = loss of spinal motor neurons an gradual paralysis splice site mutation results in differing between SMN1 and SMN2 steric blovk ASO used to modulate SMN2 splicing = higher production of functional SMN - VERY expensive
39
what is siRNA
Short interfering RNA can be designes to target and degrade specific mRNA not present naturally in mammals
40
endonuclease def
Endonucleases are a group of enzymes that cleave the phosphodiester bonds within a polynucleotide chain, separating nucleotides other than the terminal ones.
41
DICER def
endonuclease that recognises siRNA
42
siRNA mechanism of action
RISC (RNA-induced silencing complex) binds siRNA and selects one strand (degrades the other strand) selected siRNA strand binds to complementary sequence in mRNA Ago2 protein within RISC cuts target mRNA target mRNA destroyed = less protein made
43
potential targets of siRNA
oncogenic mRNA mutant alleles viral RNA
44
siRNA delivery
oligonucleotide delivery - stability and entry into cells to be considered explanation: encapsulation into nanoparticles chemical modification to enhance stability and uptake into specific cell type
45
difficulties with developing siRNA therapeutics
specificty: off target binding can be a problem efficiency: knock out is not complete, viral evolution delivery: some organs can be difficult to target, maintenance in cells can be difficult
46
descrivbe how the first approved siRNA drug works
target: mutation in TTR = mutant protein production in liver = accumulatio = fatal siRNA targets TTR mRNA = decreeased production of mutant protein
47
how are miRNAa made
encoded in genome trasncrived as part of longer RNS nuclear processing to pre miRNA DROSHA processes it into hairpin Exportin 5 exports it out of nucleous hairpin processed by dicer into duplec one strand retained as mature miRNA association with RISC- RNA-induced silencing complex binding to target mRNAs
48
differences and similrities between miRNA and siRNA
chemically identically different outcomes due to differences in target binding miRNA: many targets and reduces but does not abolish protein production. modulation of gene expression siRNA: One target. destroys mRNA=strong reduction in production of encoded protein
49
what does encoding siRNA into short hairpin RNA (shRNA) allow for delivery
encode in vectors processed by dicer allows for viral delivery
50
difficulties with developing siRNA therapeutics - efficiency
siRNAs don't knock out damaging gene, only knock down viruses evolve to prevent siRNA cleavage combinations of multiple siRNAs targeting same virus reduces this
51
activity of miRNA in animals
partial base pairing to 3'UTR sites results in translational repression and RNA degradation in P bodies
52
miRNA targets
can target hundreds of mRNAs increase/decrease in miRNA levels impacts lots of things mRNA has several target sites for different miRNA difficult to predict target due to imperfect binding
53
how do miRNAa repress protein synthesis
translaston repression mRNA decay via decapping or deadenylation
54
what is deadinlylation (miRNA)
DEADINYLATION - Remobal of poly(a) tail from Mrna - KEY STEP in miRNA gene mediated silencing - polyA tails needed to stabalise and promote translaton Remobal makes Mrna unstabe, prone to degradation by exonucleases, and decapping
55
decapping? miRNA
Decapping is the removal of the 5′ cap structure from an mRNA molecule — a crucial step in mRNA degradation and gene silencing, especially in pathways involving microRNAs (miRNAs) and nonsense-mediated decay. NEEDED FOR Protects mrna from degradation Helps with nuclear export Is essential for translation initiation