Genetics 5 Flashcards

(59 cards)

1
Q

What happens during a ‘normal’ pregnancy

A

Positive pregnancy test- no longer confirmed at GP
Book into antenatal care – see midwife
Nuchal scan – 10-14 weeks gestation. Different tests dependent upon NHS Trust e.g. nuchal translucency, combined test etc.
Mid-trimester anomaly scan
All pregnant women should be offered routine ultrasound scans at 11-14 weeks and again at 20-22 weeks.

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2
Q

What is the main method for prenatal diagnosis of fetal abnormalities

A

Ultrasound

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3
Q

When does the mid-trimester scan normally take place

A

20-22 weeks

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4
Q

What are the aims of the 12 week nuchal scan

A

To date the pregnancy accurately.
To diagnose multiple pregnancy.
To diagnose major fetal abnormalities.
To diagnose early miscarriage- no heart beat
To assess the risks of Down Syndrome and other chromosomal abnormalities- further testing is required for this.

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5
Q

What does the 12 week nuchal scan take into account

A

Taking into account the maternal age, blood hormone levels, nuchal translucency thickness, nasal bone, blood flow through the fetal heart and fetal abnormalities.

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6
Q

What does a nuchal translucency > 3mm indicate

A
Chromosome abnormalities 
	(e.g. Downs, Edwards, Patau, Turners)
NT + maternal age detects up to 75% of Down syndrome with 5% false positive rate
Birth defects: - 
Cardiac anomalies
Pulmonary defects (diaphragmatic hernia)
Renal defects
Abdominal wall defects
Skeletal dysplasias
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7
Q

How should the nuchal translucency develop

A

It should grow in proportion with the rest of the body. Hence the bones not being in the normal proportion may be due to skeletal dysplasia and this should be investigated during pregnancy,

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8
Q

What is the issue with the Nuchal scan

A

The baby needs to be in he correct orientation for it to be measured, hence tests may need to be rescheduled accordingly.

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9
Q

What is the nuchal

A

Fluid at the back of the neck.

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10
Q

What is the important thing to remember about screening tests

A

They are not diagnostic! Further tests are required.

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11
Q

What is the purpose of the mid-trimester scan

A

To measure the circumference of long bones- especially after seeing family history or looking at defects from previous pregnancies.

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12
Q

When are prenatal tests arranged

A

Following abnormal findings at nuchal scan or mid-trimester scan
Following results of combined test which give an increased risk of Down Syndrome
If previous pregnancy affected with a condition e.g. DS, CF
If parent(s) carrier of chromosome rearrangement or genetic condition, e.g. t(13;14), DMD, HD.
FH of genetic condition

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13
Q

What are the aims of prenatal testing

A

To inform and prepare parents for the birth of an affected baby
To allow in utero treatment
Manage the remainder of the pregnancy
To be prepared for complications at or after birth
To allow termination of an affected fetus

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14
Q

What are the 3 different types of prenatal tests

A
1) Scanning
Ultrasound / MRI
2) Non-invasive
Maternal blood test
Cell-free fetal DNA 
3) Invasive
Chorionic villus sampling (CVS)
Amniocentesis
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15
Q

Describe the different types of scans available

A

Ultrasound in pregnancy
Early / dating scan- confirmation- check for heartbeat, ectopic, twins
Nuchal translucency (NT) & nasal bone
High level / anomaly scan- structural anomalies

Fetal MRI- indicate CF/ show development of tissues
Usually around 20 weeks+

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16
Q

When is the early/dating scan normally done

A

8-10 weeks

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17
Q

When is the high level/anomaly scan normally done

A

18-20 weeks

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18
Q

Why are fetal cardiac scans necessary

A

Cardiac abnormalities can be treated in utero.

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19
Q

What are the different types of non-invasive tests available

A

Maternal serum screening

Cell-free fetal DNA

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20
Q

Describe maternal serum screening

A

Tests maternal serum markers in the blood to detect increased risk of fetal trisomy 21, trisomy 18 and/or neural tube defects
1st trimester maternal serum screening (with nuchal translucency measurement): 11-14 weeks [hCG, PAPP A]
2nd trimester maternal serum screening (triple screen): 16-20 weeks [AFP, uE3, hCG]
Nuchal translucency measurement: 11-14 weeks
Other variations combining 1st and 2nd trimester screening results available privately

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21
Q

Describe cell free fetal DNA

A

Non-invasive prenatal diagnosis (NIPD) works by analysing the DNA fragments present in the maternal plasma during pregnancy (cell-free DNA).
Most of this DNA comes from the mother
10%-20% of it comes from the placenta, which is representative of the unborn baby (cell-free fetal DNA).
Cell-free fetal DNA (cffDNA) is first detectable from about 4 -5 weeks’ gestation, but cannot accurately be detected on testing until around 9 weeks

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22
Q

What is a problem with cffDNA

A

It is difficult to obtain sufficient quantities of cffDNA for analysis

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23
Q

What can the cffDNA be used for

A

PCR for fetal sexing (check for Y chromosome sequences) and testing for rhesus incompatibility. Not routinely offered- do not want sex selection
NGS- can be used to test for fetal trisomies. However, it is still currently regarded as a screening test with positive results needing confirmation from amniocentesis.

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24
Q

What is abnormal about the cffDNA in DS

A

There is a higher quantity of cffDNA for chromosome 21.

25
What are the uses of cffDNA testing
Maternal blood test at around 9 weeks of pregnancy Achondroplasia - testing is free Thanatophoric dysplasia - testing is free Apert syndrome - testing is free Currently offered when there is a X-linked condition in the family e.g. DMD. Test detects SRY gene on Y chromosome, enabling us to determine if male or female fetus If male  go on to prenatal test If female  no invasive test required
26
Describe the NIPT offered privately via the NHS
Autosomal dominant single gene disorders inherited from the father or arise de novo NF1 NIPD is also possible to alter management of pregnancies at risk of recessive conditions when the mother and father carry different altered genes. if the paternal alteration has been inherited by the fetus invasive prenatal testing can be offered. - Cystic fibrosis - where parents carry different mutations or haplotyping if same mutation 12% chance that, if they do not detect a mutation, they are unable to confirm the presence of fetal DNA.
27
Describe how cffDNA can be used to test for aneuploidy
Offered privately (Harmony) or via research studies Harmony currently test for T13, T18, T21 and this identifies: 99% of fetuses with trisomy 21 97% of fetuses with trisomy 18 92% of fetuses with trisomy 13. The inaccuracy of T13 is why it is not offered under the NHS
28
Describe the research projects related to NIPD and NIPT
Translation of non-invasive prenatal diagnosis (NIPD) for Duchenne and Becker Muscular Dystrophy (DMD/BMD) into a clinical setting. Evaluating early non-invasive prenatal diagnosis (NIPD) based on cell-free fetal (cff) DNA and RNA in maternal plasma.
29
What are the limitations of NIPD and NIPT
Multiple pregnancies - It is not possible to tell which fetus the DNA is from when carrying twins/triplets etc. The relative proportion of cell-free fetal DNA is reduced in women with a high BMI as they have more of their own cell-free DNA. Although it is just a blood test, it has the same implications as an invasive test. Women may prepare themselves more for the implications of an invasive test result women must consider the consequences of the results. Do they want this information? An invasive test may still be required to confirm an abnormal result.
30
What are the benefits of NIPD and NIPT
The number of invasive tests carried out is likely to reduce as a result There is no increased risk of miscarriage. Less expertise is required to perform a blood test than an invasive test. In many cases we can offer NIPD /NIPT earlier than traditional invasive testing, thereby getting a result much earlier.
31
Why is it important that parents find out the results earlier in pregnancy
There may be less impact psychologically with early terminations of pregnancy- more time to make decisions.
32
When are invasive pre-natal tests offered
When there is a known risk.
33
Describe Chorionic Villus Sampling
Chorionic Villus Sampling (CVS) 11-14 weeks 1-2% risk of miscarriage Transabdominal or transvaginal Takes sample of chorionic villi – part of developing placenta – same DNA as fetus Allows patient to have an earlier result than amnio - important for many patients re. TOP decision
34
Describe amniocentesis
Amniocentesis From 16 weeks Takes sample of amniotic fluid which contains fetal cells ``` Risks Up to 1% risk of miscarriage Infection Rh sensitisation ```
35
What tests are done with the DNA sample from CVS
Once removed, the material undergoes expert dissection under the microscope to pick fetal material free of contaminating maternal tissue. Villi can be used for DNA extraction or rapid cytogenetic analysis or rapidly dividing cells already present. Such short-term cultures need to be compared with long-term cultures. Mosaicism detected in the villi is often difficult to interpret and retrospectively it is often confined to the placenta.
36
In DNA testing why is it important that the results are compared to that of the Mother
To ensure that the test results reflect the fetal genotype.
37
What tests are done with the DNA sample from amniocentesis
Amniotic fluid consists mainly of fetal urine and washings from the lungs. It can be analysed biochemically, or fetal cells can be isolated from the fluid and cultured for cytogenetic or molecular analysis. Newer techniques do not require cell culture such as QF=PCR.
38
Why is amniotic fluid a poorer source of DNA than chorionic villi
There are fewer cells present.
39
Describe the tests that can be done with the DNA sample
Test for the genetic disorder in question Timing for results dependent upon condition Karyotype if chromosomal abnormality in family Results 2 weeks (dependent upon the cells growing) QF-PCR for all: We send samples to Guy’s Hospital laboratory Looks for t13, 18 & 21 (plus sex chromosomes if sex chromosome disorder suspected) Result within 24-48 hours
40
What are the options for couples with a known reproductive risk
Where there is a known reproductive risk, the options for family planning include: Conceive naturally, no prenatal testing Conceive naturally, have prenatal testing Use of egg and/or sperm donors Adoption Choose not to have children Pre-implantation genetic diagnosis (PGD)
41
Describe egg and sperm donation
No longer anonymous, children conceived have the right to contact donor when 18 Best to go through a UK HFEA licensed fertility centre – conform to strict medical, ethical and legal standards Can privately find own donor Some couples may consider going abroad No mutated DNA inherited from sperm or egg.
42
Describe adoption
Two stages: Registration and checks Registering interest with adoption agency Medical and criminal background checks; three written references Usually takes ~2 months Assessment and approval Home visits by social worker Compilation of ‘prospective adopters report’, taken to adoption panel Panel review information and make a decision whether a couple is suitable to adopt Takes ~4 months
43
What is pre-implantation genetic diagnosis
Uses IVF with an additional step to genetically test the embryo before implantation PGD is particularly used by people who do not want TOP
44
Describe the process of PGD
``` Stimulation of the ovaries Egg collection Insemination Fertilisation 5. Embryo biopsy 6. Embryo testing 7. Embryo transfer 8. Pregnancy test ```
45
What should happen after hyperstimulation of the ovaries
Following hyperstimulation of the ovaries, many eggs are hopefully removed. Each egg is surrounded by sperm to allow fertilisation
46
What is intracytoplasmic sperm injection
Intracytoplasmic Sperm Injection (ICSI) single sperm injected into the centre of each egg used for conditions caused by a single faulty gene to reduce the amount of non-embryo DNA (including sperm DNA) which could make the risk of a wrong diagnosis higher.
47
At which cell stage is the embryo removed for testing of genetic condition
8-cell stage (fertility of couple determines how many 8-cell embryos they have).
48
Where is PGD available
``` At UCH: http://www.crgh.co.uk/ Costs ~ £13000 At Guy’s Hospital: http://www.pgd.org.uk/ Costs ~£12,000 ```
49
What can PGD be used to diagnose
Translocation carriers HD DMD – only implant female embryos (where mutation in family in unknown) CF
50
How is PGD funded
PGD is now nationally funded A licence is required from the HFEA for each genetic condition or indication Funded for eligible couples in NHS ( conditions that would have a significant impact) Anyone can have it privately.
51
List the eligibility criteria for PGD
Female partner is under age 39 Female partner has a BMI of 19-30 Both partners are non-smokers Couple are living together in a stable relationship No living unaffected children from the relationship Known risk of having a child affected by a ‘serious’ genetic condition (at least 10%) Female partner has hormone levels that suggest she will respond to treatment An accurate genetic test is available No welfare concerns for the unborn child A licence is required from the HFEA for each genetic condition or indication Eligible couples are usually funded for three rounds of PGD.
52
Why is PGD not always the easy option
Emotional and physical implications Can be lengthy process Success rates ~30% per cycle; ~40% per embryo transfer
53
What is the role of genetic counselling in prenatal genetic testing
Arrange & explain CVS, amniocentesis, PGD, cffDNA Facilitate decision-making Give results See patients in clinic following a diagnosis in utero Arrange termination if necessary Discuss recurrence risks and plans for future pregnancies offer alternative options explain to couples why the mutations lead to the wider syndrome- this is difficult for them to understand.
54
How can we facilitate decision making in genetic counselling
In the context of: Previous experience Family situation Religion- can prevent TOP Personal beliefs Psychosocial situation- see support in relationship- could they cope with a child with DMD? Balancing miscarriage risk with genetic risk Dealing with indecision Couples do not always agree
55
When is amniocentesis normally used
CVS failed | Results from previous tests came late
56
What is a criteria for offering tests
That the results will be conclusive and accurate, pregnancies to many mothers are precious- do we need to inform them of their risk of DS unnecessarily?
57
What indicates DS in 12 week scan
High hCG, low PAPPA, combined with nuchal translucency score
58
What happens to cffDNA after pregnancy
it disappears
59
What can different HLA haplotypes be used to determine
Which allele is from each parent