Key PHPM Concepts to Review Flashcards
(320 cards)
What is a cluster?
An unusually high incidence of disease in a certain place and time. A cluster of cases could be due to chance or could be beginning of an outbreak
What is an epidemic and how is it different from an outbreak and a pandemic?
Occurrence of more cases of disease than expected in a given area or among a specific group. An outbreak is an occurrence of a disease in excess of what would normally be expected in a defined community, geographical area, and time interval; sometimes used synonymously with epidemic, but usually used to refer to a localized epidemic . A pandemic is an epidemic occurring over a wide area, crossing international borders, and affecting a large number of people, examples are the 1918 Spanish influenza, 2009 H1N1 influenza, COVID-19
What is an emerging infectious disease?
An infectious disease with a novel range, host, or mode of transmission. This can be driven by microbial resistance, climate change, international travel, poverty, war, changes in land use (interspecies contact), human susceptibility (immunocompromise), human/vector/reservoir migration (e.g., migration to cities), population growth
Newly emerging: newly recognized in human hosts vs re-emerging: have historically infected humans, but are now appearing in new locations, appearing in drug-resistant forms, or reappearing after control or elimination
What is surveillance and what are its objectives?
Ongoing systematic collection, analysis, interpretation and evaluation of health data closely integrated with timely dissemination of this data to those who need it to improve health. Objectives of a surveillance program are to guide health interventions, estimate trends, identify groups at high risk, monitor changes in patterns of transmission, evaluate prevention strategies and suggest hypotheses for further research
Characteristics of health events conducive to surveillance:
o Important public health problem (e.g., as measured by incidence, mortality, severity, socioeconomic impact)
o Prevention, treatment, or control measures are available
o Health system has the capacity to respond
Describe the epidemiologic triad of disease and six characteristics of each sector of the triad.
Host - Person in whom a communicable disease proliferates. Characteristics:
* Health status: nutritional status, co-morbidities, medications
* Health behaviours: safer sex, smoking, drug use, eating habits
* Non-modifiable factors: age, sex/gender, ethnicity, genetic factors
* Susceptibility: insufficient resistance to prevent contracting the infection
* Innate immunity: body’s initial defense mechanism (skin, temperature, pH)
* Adaptive immunity: body’s second level of defense (e.g. cell-mediate immunity, antibody mediated immunity)
Agent - Infectious microorganism or pathogen (e.g. bacteria, fungi, viruses). Characteristics:
* Attack rate: number of people who become ill
* Infectiousness: relative ease of transmission
* Infectivity: ability of agent to enter, survive, and multiply in the host
* Minimum infectious dose: minimum number of organisms required to cause illness
* Pathogenicity: ability to cause disease
* Virulence: degree of pathogenicity (e.g. proportion of persons with clinical disease who become severely ill or die)
* Case-fatality rate: proportion of those who die from disease
* Basic reproductive number: average number of secondary infections
Environment - May affect exposure and susceptibility to disease and include
* Vectors: living creatures needed for the transmission of an infectious agent
* Fomites: inanimate objects that can harbour infectious organisms
* Reservoir: living or inert source in which an infectious agent lives and multiplies in such a way that it can eventually infect humans
* Physical factors: climate, geology, urbanization
* Socioeconomic factors: overcrowding/housing, sanitation, availability of healthcare services, immigration
* Other factors: global travel, public health infrastructure, food production and preparation, antibiotics and microbial adaptation, human behaviours
Define and discuss the impact of a high infective dose. Give an example.
Minimal infective dose - Minimum number of organisms required to cause illness
-Low infective dose: rotavirus, measles, pertussis, shigella, hepatitis A
-High infective dose: salmonella
The higher the infectious dose consumed, potentially:
-Shorter the incubation period
-May influence how sick the person becomes
What is the basic reproductive number (R)?
Average number of secondary infections generated by the first infectious individual in a population of completely susceptible individuals
o R = S x L x B (number of susceptible hosts x length of time an individual is infectious x transmissibility)
o R < 1, infection will disappear
o R = 1, Infection is endemic
o R > 1, infection can become an epidemic
Examples:
Measles 12-18, Polio 5-7, Pertussis 5.5, Diphtheria 6-7, Rubella 5-7, SARS 2-5,
Smallpox 5-7, Mumps 4-7, Influenza 2-3
Define NAATs, Serology tests, and give two examples of serology tests
Amplification: Tiny amounts of DNA/RNA are replicated many times, able to detect minute traces of an organism in a specimen, avoiding need to culture. Particularly useful for organisms that are difficult to culture or identify using other methods (e.g., viruses, obligate intracellular pathogens, fungi, mycobacteria) or that are present in low numbers. As amplification methods are so sensitive, false-positive results from trace contamination of the specimen or equipment can easily occur
Serological tests: Serological diagnosis is based on either the demonstration of the presence of IgM or IgG antibodies. Immunoassays are the most commonly used serological assays. Point-of-care tests (POC tests), both for antigens and antibodies, are also becoming more and more common in diagnostic use
Ex 1. ELISA
Enzyme immunoassays use antibodies linked to enzymes to detect antigens and to detect and quantify antibodies. Because sensitivities are high, they are usually used for screening. Titers can be determined by serially diluting the specimen as for agglutination tests. Examples are Enzyme immunoassay (EIA) and Enzyme-linked immunosorbent assay (ELISA)
Ex 2. Western blot
Detects antimicrobial antibodies in the patient’s sample by their reaction with target antigens (e.g., viral components) that have been immobilized onto a membrane by blotting. Typically has good sensitivity, although often less than that of screening tests such as ELISA, but generally is highly specific
Discuss the different routes of transmission and give 5 examples of airborne-transmitted diseases
Contact: direct through touching, biting, kissing, sneezing on hands, or sexual intercourse, or indirect through other vehicles (e.g. surgical instruments, foodborne, blood products) or vectors (e.g. mosquitoes, flies)
Droplet: transmission occurs via suspended droplets (>5um) that travel up to 1m through coughing, sneezing, or suctioning.
Airborne: transmission occurs via airborne particles <5um. The three airborne disease are measles, varicella, and tuberculosis.
5 airborne diseases: measles, varicella, tuberculosis, smallpox, Covid-19.
There is a theoretical risk of airborne transmission with monkeypox.
Define and give examples of disease control, disease elimination and disease eradication.
Control: Reduction of disease incidence, prevalence, morbidity, or mortality to a locally acceptable level. Continued intervention measures are required to maintain the reduction. Ex. diarrheal illnesses in North America.
Elimination: Reduction to zero of the incidence of disease or infection in a geographical area. Continued intervention measures are required to prevent re-establishment of transmission. E.g. measles, polio.
Eradication: Permanent reduction to zero of the worldwide incidence of infection. Continued intervention measures no longer required. E.g. Smallpox, rinderpest
List eight factors to consider in deciding whether to target a disease for eradication.
Three indicators of primary importance to achieve eradicability
-An effective intervention
-Sensitive and specific diagnostic tool is available to detect transmission
-Humans are essential for the life cycle of the agent (i.e., no other vertebrate reservoir, no environmental amplification)
Other considerations for pursuing eradication
-Diagnosis is easy and unambiguous
-Disease of public health significance
-Control interventions are simple, cost effective, and easy to implement
-Disease has limited geographical distribution
-No known animal reservoir
-Political commitment from governments is available
Define a PHEIC and describe the criteria
Public Health Emergency of International Concern (PHEIC) is any event that:
-Poses a public health risk to other states through international spread of disease AND
-Potentially requires a coordinated international response
Four diseases always require WHO notification within 24 hours: smallpox, poliomyelitis due to wild-type poliovirus, New subtype of human influenza, SARS
The following diseases must always have a PHEIC assessment: Cholera, Pneumonic plague, Yellow fever, Viral haemorrhagic fevers, (Ebola, Lassa, Marburg), West Nile fever, Other diseases that are of special national or regional concern (e.g. dengue fever, Rift Valley fever, and meningococcal disease).
PHEIC criteria, any two criteria requires WHO notification within 24 hours:
1. The public health impact is serious
2. The event is unusual or unexpected (if it is, must report to WHO no matter what)
3. There is significant risk of international spread
4. There is significant risk of international travel or trade restrictions
Name and describe 4 different types of epidemic curves
- Point source - All cases occur within the max incubation period (e.g., church supper)
- Continuing source Abrupt onset indicating a single continuous source (e.g., contaminated water supply)
- Propagated spread - Single index case results in multiple secondary cases that result in multiple tertiary cases (e.g. Covid-19). Through person to person spread. Generations initially separated by an incubation period, but they merge into a single tall peak.
- Intermittent source - Abrupt onset. Peaks do not increase in size with time. Peaks do not merge (e.g., water supply contaminated based on season)
Describe the steps of investigating an outbreak (there are 12)
Overall approach: MICC (Manage, Investigate, Control, Communicate)
- Confirm diagnosis and outbreak
- Assemble team
- Immediate control (IPAC) measures
- Establish communication
- Establish case definition
- Gather data
- Organize data, make epi curve
- Define population at risk
- Develop and test hypotheses
- Implement longer term control (IPAC) measures (case and contact management)
- Monitor response (initiate or maintain surveillance)
- Debrief, evaluation, summary report
“Cool Agents Investigate Every Eccentric Germ Outbreak, Determined Detectives Implement Measured Decisions”
What are 4 reasons you may have a false outbreak signal
- New laboratory tests (increased sensitivity)
- Change in reporting/case definition
- Seasonal variation
- Diagnostic error/bias
- Improved diagnosis of disease
- Change to disease classification
- Increased awareness of disease
- Increased access to testing
- Change in denominator of population
- Change in demographics of population
Discuss the types of evidence in a food outbreak investigation
Epidemiological
-Geographic/temporal distribution and demographics of cases
-Exposure information (e.g., food items, common event)
-Loyalty card purchase histories
-Quasi case control, cohort analysis, etc.
Laboratory
-Food and environmental sample testing
-Subtyping: Pulsed-field gel electrophoresis (PFGE), whole genome sequencing (WGS)
Food Safety
-Inspection of implicated plant
-Traceback – where did product come from
-Traceforward – where did product go
Discuss how you would manage a case, and also how you would manage contacts
Confirm the case through testing
Obtain TOCIS history (travel, occupation, contacts, immunization, symptoms)
Provide education/counselling
Treat (usually by HCP)
IPAC to prevent transmission (isolation/exclusion)
Contact tracing and notification, identify souce
COPTIC
COPTIC can also be used for contact management with the following considerations:
C - confirm contacts, how many are there?
O - obtain TOCIS history
P - provide education/counselling
T - treat (chemoprophylaxis vs immunoprophylaxis vs presumptive treatment
I - IPAC, quarantine not isolation!
C - continue to monitor contacts
List 8 control measures for managing an outbreak in LTC homes
o Hand washing and proper respiratory etiquette
o Environmental cleaning
o Isolation/cohorting of symptomatic people
o Restricting social activities and group gatherings
o No new admissions, transfers, or outside medical appointments
o Healthy work place strategies including: policies that support staff staying home when ill; and staff education about relevant policies.
o Droplet and contact precautions along with routine practices for cases in healthcare facilities
o Prophylaxis and treatment with antivirals
List and describe the stages in the chain of transmission
Infectious Agent: The pathogen
Reservoir: Where the pathogen lives/grows/multiplies
Portal of Exit: How the pathogen exits the reservoir
Mode of Transmission: How the pathogen gets from one host to another
Portal of Entry: How the pathogen enters the host
Susceptible host: Person at risk of infection
List and describe the steps of the hierarchy of controls
- Elimination: Remove the hazard
- Substitution: Replace the hazard with something less harmful
- Engineering Controls: Controlling the amount of the hazard in the environment such as through physical barriers, environmental cleaning
- Administrative Controls: Change the way people work to minimize the hazard such as through workplace policies
- Personal Protective Equipment: Create a barrier between the worker and the hazard
Define infection prevention and control
Infection prevention and control is a series of practices and measures applied in healthcare settings to reduce the transmission of pathogens amongst, patients, visitors, and staff
Discuss steps to effective IPAC
PIDAICE
P - Planning
I - Later
D - Data Collection
A - Analysis
I - Interpretation
C - Communication
E - Evaluation
Planning
- Assess the population via a health needs assessment (e.g., types of patients service, common diagnoses/treatments, frequently performed procedures, patients at highest risk)
- Select the outcome or process for surveillance (e.g., length of stay, treatment, litigation, potential for successful prevention, quality indicators)
- Use comprehensive and standardized surveillance definitions (e.g., Canadian Nosocomial Infection Surveillance Programme definitions)
Data collection
- Surveillance tools: line listings, infection reports, sentinel sheets, computer data forms
- Data sources: microbiology data, admission/medical records, patient care plans, interviews, diagnostic imaging, pharmacy orders
- Managed by trained and experienced professionals
-Methods developed to fit specific surveillance objectives
-Approach to surveillance determined by objectives and resources
-Key information to collect: demographics (age, sex, diagnosis, underlying disease), clinical infection information, laboratory data, risk factors (surgical procedures, IVs, diabetes), interventions (antibiotics, treatments, devices), response to treatment, length of Stay
Analysis
-Calculate and analyze surveillance rates
-Determine appropriate and feasible measures prior to data collection (e.g. ratios, proportions, rates, crude rates, incidence, prevalence)
-Present data so as to be understandable to user
Interpretation
-Interpret data with people who are trained in epi/data methodology
-Beware of potential problems with external comparisons
-Reports should stimulate improvement in process being measured
Communication
Evaluation
Discuss how to address antimicrobial resistance.
Framework: SIRS
Surveillance systems - detect emerging and re-emerging organisms.
IPAC - Strategies to prevent infections
Research and Innovation - to ensure evidence-based responses to AMR
Stewardship - promote appropriate use of antimicrobials, awareness campaigns etc.
List 10 organisms that are priority for surveillance in Canada as it relates to AMR
o Carbapenemase-producing Enterobacteriaceae
o Clostridioides difficile
o Methicillin-resistant Staphylococcus aureus (MRSA)
o Vancomycin resistant Enterococcus (VRE)
o Group A streptococcus (S. pyogenes)
o Streptococcus pneumoniae
o Neisseria gonorrhoeae
o Mycobacterium tuberculosis
o Typhoidal and non-typhoidal Salmonella enterica
o Candida auris