L10- B Cell Development Flashcards
(80 cards)
The common lymphoid progenitor gives rises to which cells?
Mainly to B and T cells but may also contribute to NK cells and some dendritic cells
Pro-B cells can eventually differentiate into which type of cells?
Follicular (FO) B cells, marginal zone (MZ) B cells, and B-1 cells.
Commitment to different lineages in B cell development is driven by various transcription factors. Name a few
EBF, E2A and Pax-5
What are the functions of RAG-1 and RAG-2 (recombination-activating gene) proteins?
The protein encoded by this gene is involved in antibody and T-cell receptor V(D)J recombination. RAG-1 is involved in recognition of the DNA substrate, but stable binding and cleavage activity also requires RAG-2. The RAG-1/2 complex recognizes recombination signal sequences (RSSs) that flank the V, D and J regions in the genes that encode the heavy and light chains of antibodies and components of T-cell receptors. The complex binds to the RSSs and nicks the DNA. This leads to the removal of the intervening DNA and the eventual ligation of the V, D and J sequences. Defects in this gene can cause several different diseases.
How is the body able to produce so many unique B and T cells?
The rearrangement of antigen receptor genes is the key event in lymphocyte development that is responsible for generation of a diverse repertoire. Each lymphocyte clone produces an antigen receptor with a unique antigen binding structure producing roughing 10^7 unique B and T cells.
Functional antigen receptor genes are produced in immature B cells in the bone marrow by a process of gene rearrangement, which is able to generate a large number of variable region encoding exons using a relatively small fraction of the genome
In any given developing B cell, one of many variable region gene segments is randomly selected and joined to a downstream DNA segment. The DNA rearrangement events that lead to production of antigen receptors are not dependent on or influenced by the presence of antigens
D (diversity) segments are found in both heavy and Ig light chain loci. T or F?
False. Heavy only
Explain briefly the germline organization of Ig genetic loci
The germline organization of Ig genetic loci is characterized by spatial segregation of many different sequences that encode variable domains, and relatively few sequences that encode constant domains of receptor proteins; distinct variable region sequences are joined to constant region sequences in different lymphocytes
Heavy chain locus is found on which chromosome?
Chromosome 14
The variable region of immunoglobulin heavy chain is encoded by three separate genes on the germline, what are they?
Variable (VH), diversity (DH) and joining (JH) genes
There are two Ig light chains, what are they and what chromosomes are they found?
- A.kappa (κ) chain, encoded by the immunoglobulin kappa locus on chromosome 2
- lambda (λ) chain, encoded by the immunoglobulin lambda locus on chromosome 22
Which Ig light chains are expressed for each B cell?
Only one class of light chain is expressed at one time, either kappa (κ) chain or lambda (λ) chain. Thus the two light chains of an individual antibody are identical. Once set, light chain class remains fixed for the life of the B lymphocyte. In a healthy individual, the total kappa-to-lambda ratio is roughly 2:1 in serum (measuring intact whole antibodies) or 1:1.5 if measuring free light chains, with a highly divergent ratio indicative of neoplasm.
Each light chain is composed of two tandem immunoglobulin domains, what are they?
One constant (CL) domain and one variable (VL), that is important for binding antigen. Remember No diversity domain for light chains.
What is the approximate length of a light chain protein and which region determines what class the light chain is?
Length of the protein is between 211 and 217 amino acids. The constant region determines what class (kappa or lamda) the light chain is. The lambda class has 4 subtypes (λ1, λ 2, λ3, and λ7).
Where is the constant region located of the Ig molecule?
The constant region is located 3’ of the J segments.
How many constant regions are found in both the heavy and light chains of an Ig molecule?
For light chain locus;
• kappa (κ) chain has a single C gene;
• lambda (λ) chain has 4 functional C genes. (λ1, λ 2, λ3, and λ7)
For heavy chain locus;
• nine functional C genes (CH), arranged in tandem array, that encode the C regions of the nine different Ig isotypes and subtypes.
How many exons can be found on both the heavy and light chains?
The Cκ and Cλ genes are each composed of a single exon that encodes the entire C domain of the light chains. In contrast, each CH gene is composed of five or six exons. Three or four exons (each similar in size to a V gene segment) each encode a CH domain of the Ig heavy chain, and two smaller exons code for the carboxy-terminal ends if the membrane form of each Ig heavy chain, including the transmembrane and cytoplasmic domains of the heavy chains.
From the same germline DNA, is it possible to generate recombined DNA sequences and mRNAs that differ in their V-D-J junctions?
Yes, for example, three distinct antigen receptor mRNAs are produced from the same germline DNA by the use of different gene segments and the addition of nucleotides to the junctions. The somatic recombination (V-D-J joining) also produces additional N and P nucleotides, transcription and RNA processing in the 3 different B cell clones used in the example.
Lymphocyte-specific proteins that mediate V(D)J recombination recognize certain DNA sequences called what?
Recombination signal sequences (RSSs)
What are recombination signal sequences (RSSs) and where are they located?
Lymphocyte-specific proteins that mediate V(D)J recombination recognize certain DNA sequences. There located 3’ of each V gene segment, 5’ of each J segment, and flanking each side of every D segment
The RSSs consist of a highly conserved stretch of 7 nucleotides, called what?
Heptamer
Where is the heptamer located?
Located adjacent to the coding sequence, followed by a spacer, followed by the nonamer.
During V(D)J recombination, what happens with the heptamer of the RSS and adjacent V, D or J coding sequences?
Double-stranded breaks are generated between the heptamer of the RSS and the adjacent V, D, or J coding sequence
How is the circle formed in V (D) J recombination?
During V (D) J recombination, double stranded breaks are generated between the heptamer of the RSS and the adjacent V, D or J coding sequence. In Ig light chain V to J recombination, for example, breaks will be made 3’ of a V segment and 5’ of a J segment. The intervening double-stranded DNA containing signal ends (the ends that contain the heptamer and the rest of the RSS), is removed in the form of a circle, and the V and J coding ends are joined.
In some V genes, especially in the Ig κ locus; the RSSs are 3’ of a Vκ and 3’ of Jκ, and therefore do not face each other, so what happens in this case?
In these cases, the intervening DNA is inverted and the V and J segments are properly aligned; the fused RSSs are not deleted but retained in the chromosome. Inversion occurs up to 50% of rearrangements in the Ig κ locus.