Last Minute Flashcards
(104 cards)
A bacterial strain lacking the RecA protein will be
unable to perform generalized recombination
RecA is involved in generalized recombination. Phase variation is an example of site-specific recombination, which does not require RecA.
A mutation always results in
change in genotype
Any change to the DNA sequence results in a change in the genome. Mutations may be beneficial or neutral. A neutral or silent mutation may not affect the phenotype.
An insertion sequence contains a gene for this enzyme
Transposase
An insertion sequence (IS) is a simple transposable element that consists of a transposase gene flanked by short, inverted repeats that are the target of transposase.
Avery, MacLeod, and MacCarthy performed landmark experiments showing transformation in which bacterium?
Streptococcus pneumoniae
Studies identifying transformation were performed in the 1940s using Streptococcus pneumoniae.
Bacteria may donate DNA to
other bacteria of the same or of a different species, some eukaryotic cells, and bacteriophages.
Bacteria can donate DNA to a wide variety of other cells and also viruses. For example, the bacterium Agrobacterium tumefaciens can transfer DNA into plants and phages can acquire bacterial DNA during infection.
Based on gel electrophoresis, a nonfunctional protein is found to have a smaller molecular weight than its wild-type counterpart. A likely explanation for this observation is a
nonsense mutation in the DNA coding for the
protein
A nonsense mutation causes a premature stop codon, shortening the protein and lowering its molecular weight. A silent mutation does not change sthe amino acid sequence of the protein. A missense mutation, which replaces one amino acid with another, is unlikely to have a large effect on protein molecular weight. A duplication of the DNA may change the amount of protein being produced, but not its molecular weight.
DNA encoding for which capability is part of the flexible gene pool?
Antibiotic resistance
Not all organisms need to contain the genes encoding resistance to specific antibiotics. Genes encoding enzymes involved in DNA replication, ribosome synthesis, and cell membrane synthesis are part of the core gene pool, which consists of genes needed by organisms for independent growth and replication.
During DNA synthesis, if DNA polymerase incorporates a wrong nucleotide,
methyl mismatch repair will correct the unmethylated daughter strand to match the methylated template strand.
DNA polymerase is very accurate, but not 100% accurate. Methyl mismatch repair may catch and fix mistakes. The parent strand is methylated and the newly synthesized daughter strand is at first unmethylated, so the unmethylated strand gets repaired.
Horizontal gene transfer can occur via
Conjugation, transformation, and transduction can all lead to horizontal gene transfer.
If a bacterial cell is competent, it means that
the bacterium can import free DNA fragments and incorporate them into its genome
Competence refers to the ability to perform transformation.
If a bacterial cell is missing AP endonuclease genes, which of the following could NOT occur
Base excision repair
AP endonucleases are used during base excision repair, after a glycosylase removes a damaged base, forming an AP site.
If a cytosine deaminates and becomes a uracil, which enzyme will cleave the uracil from the DNA backbone in the first step of a repair process?
Glycosylase
Glycosylases remove damaged or wrong bases from the phosphodiester backbone in an early step of base excision repair.
In generalized recombination, which protein complex is responsible for homology searching?
RecA
During generalized recombination, the RecA protein complex finds homology and mediates strand invasion.
In the basic Ames test for mutagenesis, a mutagen is tested to see if it can
produce colonies on basic medium that lacks
histidine, starting with a hisG mutant strain of bacteria
The Ames test is a reversion test, meaning that the mutagen is tested to see if it can restore the ability to synthesize histidine to hisG mutant bacteria.
One sign of horizontal gene transfer is
GC base ratio different from flanking chromosomal DNA
Each type of microorganism has particular GC ratios. Regions of the genome with highly different ratios may be example of genes acquired via horizontal transfer. Uniform codon usage argues against horizontal gene transfer. Gene duplication may occur during replication, but this is not a form of horizontal gene transfer. Gene loss may lead to pathogenicity, but gene loss is not horizontal gene transfer.
Over time, the genome of a species
may change due to mutation or gene swapping
Over time, genomes change due to a variety of different mechanisms. Harmful mutations will not persist in a population and although whole genomes may double, this is a rare event.
Pathogenicity islands (PAIs) are often found integrated near
tRNA genes
The tRNA genes often serve as sites of PAI integration.
Replicative transposition differs from nonreplicative transposition in that
only replicative transposition results in the insertion sequence appearing in new host DNA, while still remaining in the original DNA site
The term “replicative” refers to whether the DNA element is replicated (replicative) or excised and moved (non replicative).
Site-specific recombination
needs very little sequence homology between the donor and recipient DNA
Unlike generalized recombination, which requires RecA and large regions of sequence homology, site-specific recombination requires only minimal regions of homology.
The enzyme photolyase repairs DNA damage caused by
UV radiation
The mutation rate in a wild-type E. coli cell is on the order
of
10^–9 per base pair replicated
The mutation rate in a cell is approximately 10^–9 to 10^–10 per base pair replicated.
The process of importing free DNA from the environment into cells is called
transformation
Transformation is the uptake of DNA from the environment. Conjugation requires cell-cell contact, transduction is mediated through a bacteriophage, and transcription is the production of an RNA complementary to a DNA template.
The relaxase enzyme, used during conjugation, has which enzymatic activity?
Endonuclease
Relaxase nicks the phosphodiester backbone at oriT site on the fertility factor prior to transfer of a single strand into the recipient cell.
Transduction is an example of
horizontal gene transfer
Transduction, the acquisition of a gene from a bacteriophage, is an example of horizontal gene transfer. It does not imply gene duplication, although this may occur. Vertical gene transfer occurs during cellular DNA replication and cell division.