Lecture 1: Molec Foundations Flashcards

1
Q

Wha are the three unidentified cell theories?

A

1 - cells are the most basic unit of life
2- all living things are made from cells
3 - new cells are made from existing cells

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What are some properties of life that cells display?

A

1 - order molecule reactions
2- energy processing
3- response to stimuli and resistant to environment
4- reproduction, growth and development
5- regulation of metabolism and material transfer
6 - adaption and evolution

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What are the 4 macromolecules

A

1 - carbohydrates
2- lipids
3- proteins
4- nuclei acids

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

What is the monomers for all four macromolecules

A

1 - carbs - monosaccharide
2 - lipids - fatty acid + glycerol
3 - proteins - amino acids
4 - nucleic acids - nucleotides

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What are the polymers from the macromolecules

A

1 - proteins - polypeptide
2 - carbs - disaccharide/polysaccharide
3 - lipids - triglycerol/ phospholipid
4 - nucleic acid - oligonucleotides/ polynucleotide

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

What are the bonds for all four macromolecules

A

1 - carbs - glycocydic
2 - lipids - ester
3 - proteins - peptide
4 - nucleic acids - phosphodiester

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What are the roles of carbs

A

Decorate proteins to create signals, or the sugar can be the signal in itself

  • Sugars (Carbs) —> ATP —-> energy
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Nucleotides function

A

1 - Make DNA/ RNA
2 - providing energy (ATP and GTP)
3 - regulating cellular function (GTP)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

What is GTP

A

The “regulatory” nucleotide

  • controls when energy is released
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What does the G protein do in GTP

A

They cut then GTP to release the phosphate which will create or release energy

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What do GAPs do

A

The G protein will cut the phosphate from GTP thereby inactivating the enzyme
- there is a “GAP” with the phosphate missing

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What do GEFs do?

A

GEFs regenerate G proteins by replacing the GDP with GTP

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

GTP is known as the regulatory enzyme, but we know that it is really ______________ working behind the scenes

A

GEF and GAP

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What is the fluid mosaic model and the components

A

Cell membranes made from several different structures that allow for their flexible nature

  • lipids
    -proteins
    -carbohydrates
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is the base component of the fluid mosaic model

A

Lipid bilateral

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Where are carbohydrates found on the FMM

A

Decorating the lipids and proteins NOT in the cytosine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

Integral membrane vs peripheral membrane

A

Integral - is a protein that spans the entire width of the lipid bilayer

Peripheral - is a proteins hat only goes half way through the membrane

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

The 4 structures of proteins include

A

1 - primary : chain of amino acids
2 - secondary : the chains are connected by H bonds
3 - tertiary : (motifs) the chains made in the secondary step begin to fold
4 - quaternary : interaction of multiple peptides

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

What is the main function of proteins

A

To do work

20
Q

What are two regulatory principles that effect the next step if the process?

A
  • Activators : promote reaction
  • inhibitors : stop reaction
21
Q

What are two regulatory principles that determine which process is influenced?

A
  • Substrate level control : acts on single step in pathway
  • Feedback control : targets different steps in the pathway
22
Q

What are some strategies to regulate protein function?

A
  • On/ Off fashion : Availability
    - synthesis (built up) degrading (breakdown)
    - all pieces in the proper location
  • Volume dial : Activity
    - adding or subtracting pieces
    - extra molecules required
    - similar but different proteins
23
Q

What is an option for availability option when regulating a protein?

A

Gene expression: which is a multi step process that occurs in a certain part of a cells life

24
Q

What is compartmentalization?

A

When chemical reactions only occur in certain compartments of the cell

25
What is a signaling molecule
A substrate to ligand that interacts with a proteins to allow it to complete work. A ligand or substrate is not released unless it has an external cue
26
Covalent modifications is an example of enzyme regulation, what are the two ways covalent modifications occur
1 - reversible: this is when a negative or positive function group acts to wither activate or inactivate the enzyme 2 - irreversible: is when a protein can turn in to increase activity - many important enzymes or proteins need to be cut apart in order to be full activated
27
What are some common addition of functional groups to activate/ inactivate an enzyme?
The 4 macromolecules, but the most common is phosphates
28
How can a phosphate be added/ removed to activate/ inactivate an enzyme?
Kinases: add phosphate to activate Photophatases: removes a phosphate to inhibit it
29
There are two types of allostery, what are they and the functions?
Allostery is the biding to of a ligand to a protein Heteroallostery Homoallostery
30
What is heteroallostery?
is when an activator or inhibitor alters substrate binding The active site is where the chemical reaction takes place The allostery site is a different location int eh enzyme where an effector binds
31
What is homoallostery?
Each substrate binding alters the next binding site on the neighbor - Positive: the next substrate has an easier time binging - negative: the next substrate has a more difficult time binding
32
Why are cofactors/ coenzymes part of regulation for an enzyme?
Some enzymes need a little help to be complete/ active - cofactors: metal ions - coenzyme : vitamins and other macromolecules derivatives
33
Why does the quaternary structure vary based on the available isozymes (isosomes)
They catalyze the same reaction but at different frequencies
34
Carbohydrates : Location, Role, and Apperance?
1 - decorating the lipids and proteins 2 - molecule identification and protection 3 - rigid. Slimy
35
Lipid: Location, Role, Appearance?
1 - membranes 2 - semi permeable membrane 3 - oily and waxy
36
Protein: Location, Role, Appearance?
1 - everywhere 2 - do work 3 - fibers
37
Nucleic acid: Location, Role, Apperance?
1 - nucleus, mitochondria, chloroplast, cytosol 2 - genetic material, energy, regulation 3 - snotty
38
What is the function of the nucleus?
DNA, RNA synthesized here Ribosomes are assembled
39
What happend in tehe cytoplasm?
Metabolism
40
What is the function of lysosomes
Digestion in low pH
41
Peroxisome function
Oxidation
42
It’s a theory, but how is it believed endosymbiosis occurs?
Due to eating prey Merging
43
Not all cells in eukaryotes have membrane bound organelles. what are they and what happens to them?
Bimolecular Condensates (Liquids): nucleolus and granules Macro molecular machines (solids): cytoskeleton, ribosome, extra cellular matrix , and all proteins and their complexes
44
What is the function of the nucleolus?
Making ribosome subunits
45
What is the function for the ECM
Cell shape and signal transmission