Lecture 3 Flashcards

(106 cards)

1
Q

Chemistry

A

The science that deals with the composition and properties of substances and various elementary forms of matter (gas, liquid, solid).

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2
Q

Biochemistry

A

The science concerned with the chemical and physicochemical processes & substances that occur within living organisms.

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3
Q

Matter

A

Everything around us that has mass and occupies space.

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4
Q

What is an element?

A

A substance made up of just one type of atom so it cannot be split up into simpler substances.

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5
Q

How many different elements are normally
present in the human body?

A

26

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6
Q

What are the major elements normally
present in the human body?

A

Carbon, hydrogen, oxygen and nitrogen, which account for 96% of the human body.

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7
Q

What is every element made of?

A

Every element is made up of atoms. Each atom is made up of subatomic particles called protons, neutrons and electrons.
Protons and neutrons together form the nucleus of an atom.

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8
Q

State the mass and charge of subatomic particles. What is the overall charge of the atom?

A

Protons have a positive charge and a mass of approximately 1 atomic unit.
Neutrons have no charge and a mass of approximately 1 atomic unit.
Electrons are negatively charged particles. They have virtually no mass at all.
All the chemical properties of an atom are down to its number of protons and electrons. The neutrons just add weight to the atom; they don’t significantly change how it chemically reacts.
An element will have an equal number of electrons and protons giving an overall neutral charge to the atom.

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9
Q

How do electrons move?

A

Electrons move in groups around the nucleus, known as ‘electron shells’.
Within their shells electrons ‘pair-up’.

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10
Q

When does an atom becomes reactive?

A

An atom becomes reactive if its outer shell isn’t full or if it loses an electron.
This happens in ‘free radicals’, where an electron becomes unpaired.

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11
Q

What is The Periodic Table?

A

A list of all of the currently known elements, arranged in columns and rows that show us which elements share similar reactivity and physical properties.

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12
Q

What is The Periodic Table?

A

A list of all of the currently known elements, arranged in columns and rows that show us which elements share similar reactivity and physical properties.

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13
Q

What do the numbers assigned to each element tell us?

A

The number that is assigned to each element tells us how many protons and, therefore, how many electrons each atom has.
The larger number is always the mass number. It tells us how much the atom weighs so it can be used to work out the number of neutrons.

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14
Q

How Fluoride and Chloride can affect the thyroid gland?

A

Iodine, Fluoride and Chloride are all halogens (in the same group on the periodic table).
Iodine is required for the synthesis of thyroid hormones (T3 & T4). If other more powerful halogens are present in the body (fluoride & chloride) they can enter the thyroid, preventing the formation of T3 & T4 (inducing hypothyroidism).
Fluoride is in toothpaste, tap water and mouthwashes, whilst chlorine is in swimming pools and chlorinated washed vegetables.

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15
Q

Counting Subatomic Particles

A

Atomic number = number of protons.
Mass number = number of protons + number of neutrons.
Number of neutrons = Mass number – atomic number.

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16
Q

What are Isotopes?

A

Atoms of the same element which have a different number of neutrons in the nucleus.
This does not affect the chemical activity of the atom as neutrons have no charge, but it does change the mass.

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17
Q

Isotopes & cause of radioactivity

A

Some isotopes have such an imbalance of protons and neutrons in their nucleus that it causes the atom to become unstable.
This is the cause of radioactivity. The unstable atom needs to get rid of energy to become stable.

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18
Q

How Isotopes are used in a PET scan?

A

A ‘PET scan’ is an imaging technique used in allopathic medicine.
Radioactive isotopes are introduced (often injected) into the body.

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19
Q

How Isotopes are used in medicine (not PET scan)?

A

Radiotherapy (uses the gamma rays from radioactive isotopes to target rapidly dividing cells).
The breath test for H. pylori (uses urea labelled with either radioactive carbon-14 or non-radioactive carbon-13).

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20
Q

What drives all of the reactions that happen in Chemistry?

A

All of the reactions that happen in Chemistry are driven by atoms trying to end up with a stable and full outer shell either by stealing, giving away (donating) or sharing electrons.

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21
Q

What elements are called ‘inert’?

A

Elements that do not easily react as they have their outer shell filled with the perfect number, so they are rarely involved in chemical reactions.

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22
Q

Why do we often refer to Hydrogen, when it is in its H+ form (hydrogen minus the electron’), as being a ‘proton’?

A

Hydrogen contains one proton, one electron, no neutrons.
This is why we talk about acidity in terms of protons.

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23
Q

What are the two main types of bonding?

A

Ionic bonding – atoms transfer electrons (1 donates, 1 receives).
Covalent bonding – occurs when atoms share electrons.

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24
Q

What is Ionic Bonding?

A

Ionic bonds occur when one atom donates some of its electrons to another.
This usually only occurs when there are 1, 2 or occasionally three electrons to donate.

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25
What is an ion?
If an atom gives up or gains electrons to fill its outer shell, it becomes an ion. Ionisation is the process of giving or gaining electrons. Ions are written with their corresponding – or + charge.
26
What is Covalent Bonds?
Covalent bonds occur when two elements share electrons. This kind of bonding tends to happen when the two atoms are similar or when there are a lot of spaces to be filled to reach a full outer shell.
27
What is a Polar Bond? Give an example.
Polar covalent bonds form where electrons are shared unequally. This happens because some atoms have a lot of ‘electron-pulling power. One of the most important examples of a polar bond are the bonds between Oxygen and Hydrogen in water. These interactions are called hydrogen bonds and are what give water many of its special properties such as surface tension and the ability to dissolve so many different things.
28
What elements are referred to as ‘electronegative’?
The elements that have lots of protons compared to the number of electron shells (i.e. a strong positive centre) and they tend to pull the shared electrons towards themselves. These very electronegative atoms are able to pull the electrons in a bond towards them, leading to an uneven distribution of charge.
29
Why is water called the universal solvent?
Water serves as the medium for most chemical reactions in the body. As water contains polar bonds, it is an ideal solvent for dissolving chemicals into their separate ions. In addition, the different electrical charges in water can allow water molecules to become attracted to other molecules (hence water dissolves salt).
30
What are the differences between Hydrophilic and Hydrophobic molecules?
Hydrophilic molecules are molecules which have polar bonds. They dissolve easily in water (e.g. alcohol). Hydrophobic molecules contain non-polar covalent bonds, so they do not dissociate easily in water (e.g. fats)
31
What is an electrolyte?
An electrolyte is formed when an ionic compound (e.g. salt) dissolves in water. Electrolytes can conduct electricity.
32
Name the key electrolytes in the body.
Sodium, Potassium, Chloride, Calcium, Magnesium, Phosphate, Bicarbonate.
33
Why electrolytes are important body constituents? (their functions)
- Conduction of electricity is essential for nerve & muscle function. - Exert osmotic pressure (important for water balance). - Some play an important role in acid-base balance.
34
What is an acid?
An acid is a substance that releases a high amount of H+ ions when dissolved in water. Anything with a pH lower than 7 is an acid.
35
What is a base?
A base is a substance which binds to hydrogen ions in solution. This creates lots of OH-. Anything higher than 7 is considered a base (alkali).
36
Why water is a neutral solution?
Because for every H+ released an OH- is also created. The pH of water is 7.
37
What is the optimal pH of blood and stomach?
The blood closely monitors and maintains an optimal pH of 7.35-7.45 for chemical reactions to occur, whilst the stomach has an optimal pH of 2-3.
38
Compare the acidity/alkalinity in fruit and vegetables vs meat and dairy.
Fruit and vegetables contain organic acids and hence may have a low pH before consumption. Yet these organic acids can be metabolised by the body and intestinal bacteria to become alkaline. These foods are also high in alkaline minerals, e.g. potassium, magnesium and calcium which contribute to their net alkaline effect. Before consumption, dairy is not very acidic and is also high in calcium, an alkaline mineral. Yet dairy is considered more "acidic" because of the higher protein/sulphur amino acid content. The sulphur amino acids increase sulphuric acid formation, which then disrupts blood pH drawing more calcium from bones and increasing calcium loss in urine. For this reason, meat, also high in sulphur amino acids, will have a net acid effect.
39
When do chemical reactions occur? What are the starting materials and end molecules called?
Chemical reactions occur when new bonds are formed or old bonds are broken between different molecules. The starting materials are known as the reactants and the end molecules are known as the products.
40
What influences chemical reactions?
- There needs to be the opportunity for two molecules to collide (‘collision theory’). - Chemical reactions are reliant on the correct temperature and enough reactants. - The higher the energy of the molecules, the faster they move and the greater chance they have of reacting. - Changes in pressure can also change the speed of reactions, with increasing pressure forcing molecules closer together.
41
What is a catalyst? Give an example.
A catalyst speeds up reactions by lowering the activation energy required (the reaction is faster or can occur at a lower temperature). Catalysts that the body produces are called ‘enzymes’. For example, the enzyme ‘HMGCoA reductase’ in the production of cholesterol and CoQ10.
42
What is an inhibitor? Give an example.
Inhibitors act antagonistically to catalysts. They stop the catalyst from being so effective by making the activation energy higher and hence slow down the reaction time. Many drugs are inhibitors e.g. ‘Statins’ are HMG-CoA reductase inhibitors.
43
Types of Chemical Reactions: Anabolic reactions.
Anabolic reactions are synthesis (building) reactions. This occurs when the body is making new substances and building new bonds. For example, taking amino acids and building a protein. This requires energy.
44
Types of Chemical Reactions: Catabolic reactions.
Catabolism describes reactions where “breaking down” occurs. For example, when breaking down food, releasing energy from them. We trap that energy as ‘ATP’.
45
What is hydrolysis?
When water is the medium that breaks down the molecule into smaller pieces.
46
What is dehydration synthesis?
When water is formed as the waste product of a reaction; this is normally when larger molecules are being made. E.g. when making carbohydrates.
47
What is a reversible reaction?
Chemical reactions whereby the products of the reaction can react together to produce the original reactants (meaning it can go back the other way). This is done using enzymes and mechanisms in place that allow us to remove starting materials and products.
48
Bicarbonate buffer system formula
CO2 + H2O ↔ H2CO3 ↔ H+ + HCO3–
49
What are buffers? Name two.
Buffers are substances that maintain the H+ concentration in the body within normal limits. They can bind to H+ ions and OH- to ensure the blood pH remains between 7.35-7.45. -The most important buffer system in the bloodstream is the bicarbonate (HCO3-) buffer system, which “mops up” excess acidity. -The kidneys can also produce the HCO3- buffer and excrete excess H+ ions. It is fairly slow and strenuous upon the organ.
50
How does the bicarbonate (HCO3-) buffer system work?
Catalysed by carbonic anhydrase, carbon dioxide from cellular respiration reacts with water in the blood to form carbonic acid, which rapidly dissociates to form a bicarbonate & hydrogen ion. These reactions are reversible. When extra hydrogen ions accumulate in the blood (after strenuous exercise ↑lactic acid), the reaction is able to adjust to “mop up” the extra H+ ions, making more carbon dioxide and water. This is then accounted for by increasing breathing rate and hence the exhalation of carbon dioxide through the lungs.
51
What is 'oxidation' reaction?
The removal of electrons from an atom or molecule. Oxidation reduces the potential energy in a compound. Generally, most oxidation occurs by removing electrons with the help of hydrogen. Because hydrogen is lost, this is often called a dehydration reaction.
52
What is 'reduction' reaction?
When something is ‘reduced’, it gains electrons, resulting in the increase of energy in that molecule. A gain of hydrogen is normally indicative of something being reduced.
53
Free radicals
Molecules or compounds with an unpaired electron in their outer shell try to ‘steal’ electrons from other stable molecules, causing ‘oxidation’. Can even take electrons from DNA, which can damage genes and ultimately result in cancerous changes.
54
What is oxidative damage linked to?
Cancer, atherosclerosis (endothelial damage), fibromyalgia and neurodegenerative diseases.
55
What causes oxidative damage in the body?
Processes within our bodies such as aerobic respiration, metabolism & inflammation. They can also come from the environment, e.g. pollution, sunlight, strenuous exercise, X-rays, smoking, alcohol.
56
Antioxidants
Antioxidants work by donating an electron to the free radicals to convert them to harmless molecules, without being damaged themselves. Antioxidants consist of a group of vitamins, phytochemicals and enzymes that work to neutralise free radicals before they harm our bodies.
57
Why do antioxidants work best as a collection?
They can recycle each other. They do not work in isolation. The key to a good antioxidant is that it must be stable once it has given away its electron.
58
Name three antioxidants.
Beta-Carotene, vitamin E, vitamin C, quercetin, Glutathione Peroxidase.
59
What is a 'functional group'?
Living things are characterised by molecules made from carbon. Any other groups of atoms that are attached to the carbon skeleton are known as ‘functional groups'. They contribute to the structure and function of that molecule.
60
Hydroxyl group
Polar and hydrophilic. Dissolve easily in water. Alcohols.
61
Sulfhydryl group
Polar and hydrophilic. Common in some protein chains. Found in the sulphur-containing amino acid cysteine.
62
Carboxyl group
Hydrophilic and can interact as a weak acid or as negative particle. Found in amino acids.
63
Carboxyl group
Hydrophilic and can interact as a weak acid or as negative particle. Found in amino acids.
64
Amine Group
The -NH2 group can act as a weak base if necessary (mopping up H+). Found in amino acids.
65
Esters
Predominate bond in triglycerides.
66
Functional Group: Phosphates
Very hydrophilic (dissolve easily in water), as they can form a double negative charge. Found in ATP.
67
What are carbohydrates made of? Give examples. How are they arranged?
Carbohydrates include starches (bread, pasta), cellulose (plants) and sugars. All carbohydrates are made of C-H-O. The carbon atoms are normally arranged in a ring with oxygen and hydrogen atoms attached.
68
Carbohydrates are grouped into 3 classes, depending on their size
monosaccharides, disaccharides & polysaccharides.
69
What are monosaccharides? Give three examples.
Monosaccharides are simple sugars that can exist as single molecules. All end in -ose. Glucose Fructose (the sweetest) Galactose Deoxyribose Ribose
70
How are monosaccharides grouped?
According to the number of carbon atoms within that type of sugar. – Triose (3 carbons). – Pentose (5 carbons). – Hexoses (6 carbons). – Heptose (7 carbons).
70
What are disaccharides? How are they formed and how can they be broken? Give examples.
Two monosaccharides joined together in a dehydration synthesis (‘removing water' to create a ‘glycosidic bond’). Can be broken apart by hydrolysis (putting water back into the bond). Sucrose = glucose + fructose Lactose = glucose + galactose Maltose = glucose + glucose
71
What are polysaccharides? Give examples. What is the most common type?
Typically long chains of glucose molecules joined together e.g. starch, glycogen (most common) & cellulose.
72
Are polysaccharides soluble in water? Why?
Normally insoluble in water (because they have given up many –OH groups).
73
Explain what is meant by an isomer?
Isomers have the same chemical formula but different structures.
74
What is the major dietary source of carbohydrate? What are its two components?
Starch. It is made up of two different polysaccharide components. – 20-25% Amylose: single chain of glucose units. – 75-80% Amylopectin: branch-like structure.
75
Amylopectin
Highly branched, leaving more surface area available for digestion. It’s broken down quickly, which means it produces a higher rise in blood sugar (glucose) and subsequently, a higher rise in insulin.
76
Amylose
A straight chain, which limits the amount of surface area exposed for digestion. Foods high in amylose are sometimes referred to as sources of resistant starch as they are digested more slowly. Due to its slower digestion, some resistant starch ends up in the large intestine where it can act as a food source for the bacteria there.
77
Where is glycogen stored?
It is made and stored primarily by the liver and the muscles. Primary short-term energy storage. Glycogen in the liver can be used to help maintain blood sugar levels.
78
Cellulose
Cellulose is the structural material of plants – found in plant cell walls. Humans lack the correct enzymes to break the ‘unique’ bonds between glucose molecules in cellulose, so we cannot digest it. Instead, cellulose acts as fibre which assists with the movement of materials through the intestines.
79
Benefits of fibre-rich diet
– Needed for proper bowel function. – Protects against cardiovascular disease. – Protects against diabetes. – Increase satiety & aid weight loss. – Protects against colorectal cancer.
80
Carbohydrate Digestion
Salivary amylase starts working on the end of the long glucose chains in starches. It works well at a fairly neutral pH, but is deactivated by stomach acid. In the small intestine, the pancreas releases pancreatic amylase which continues carbohydrate digestion, but this time into disaccharide units. The last stage of carbohydrate digestion involves brush border enzymes in the small intestine (lactase, maltase and sucrase).
81
Why are lipids hydrophobic?
Because lipids have fewer polar -OH groups
82
How do lipids move around the body?
To move around the body, they are often bonded to a protein to make them more soluble (proteins act like “taxis”). They are then called ‘lipoproteins’.
83
Triglycerides structure
Contain a single glycerol molecule and three fatty acid chains (saturated or unsaturated). Fatty acids are attached to glycerol by a dehydration synthesis reaction and the bond formed is known as an ‘ester’ (different from the glycosidic bond seen in carbohydrates).
84
Triglycerides functions
* Source of energy (less efficient than carbohydrates). * Convenient form to store excess calorific intake (extra glucose is also turned into triglycerides). * Insulation. * Protection of body parts and organs (e.g. kidneys).
85
Saturated Fats structure and example
Contain single covalent bonds between each of the fatty acid carbon atoms. Each carbon atom is saturated with hydrogen atoms. Saturated fatty acids are very straight (can line up close to each other). Saturated fats are generally solid at room temperature e.g. coconut oil.
86
Monounsaturated Fats structure and example
Contain fatty acids with one double covalent bond between two carbons. The double bond forces the molecule into a bent configuration. Generally are liquids at room temperature because the molecules can’t pack very closely together e.g. olive oil.
87
Polyunsaturated Fats
Contain more than one double bond in the carbon chain. These molecules are ‘kinked’ so they are liquids at room temperature e.g. sunflower oil, rapeseed oils, vegetable oils.
88
The fatty acids are named according to
According to the closest double bond to the end of the chain. – Omega-3 - the double bond is three carbons up from the end. – Omega-6 - the double bond is 6 carbons up from the end.
89
Cis-fats. Can they be turned into trans-fats?
When the H atoms are on the same side of the double bond. Nearly all fats in nature. Our body recognises these and can use them. Cis-fatty acid is bent and makes the cell membrane more flexible. Can be turned into trans-fats by heating to high temperatures or heating oil repeatedly (the H spins around).
90
Trans-fats
When the H atoms are on separate sides the double bond. Formed in laboratories/industry during hydrogenation reactions (processed foods and margarine). Trans-fatty acid is more linear and 'stiffen' cell membranes, prone to oxidative damage and making cell membranes leaky.
91
What are Essential fatty acids (EFAs)?
Polyunsaturated fatty acids that cannot be constructed within the body from other components and, therefore, must be obtained from the diet.
92
Give examples of Omega-3 fats?
ALA — flax seeds, walnuts, green leafy vegetables. EPA & DHA — oily fish.
92
Give examples of Omega-6 fats?
LA — vegetable oils, most nuts / seeds. GLA — borage oil, evening primrose oil. AA — meat, dairy and eggs.
93
Functions of EFAs.
* Fluidity and structure of cell membranes. * Synthesis of prostaglandins. * Regulate oxygen use, electron transportation and energy production. * Help to form haemoglobin. * Support the production of digestive enzymes. * Help make the lubricants for joints. * Help transport cholesterol in the blood. * Help generate electric currents and keep the heart rate regular. * Needed by the tissues of the brain, retina, adrenal glands and testes. * Help balance the immune system and prevent allergies. * Ensure proper nerve transmission especially in the brain.
94
Which types of fat are particularly prone to oxidation?
Polyunsaturated fats such as EFAs are very prone to becoming free radicals. When these fats are heated, electrons can be lost. This means that a fat is formed that becomes a free radical. This then further reacts with the oxygen in the air over the cooking pan which becomes even more damaging. Radical formation is accelerated by light, oxygen and heat.
95
What is a lipoprotein and what it contains internally?
A fat molecule that has been joined to a protein molecule, enabling the lipid to move around the bloodstream. Lipoproteins contain triglycerides and cholesterol internally.
96
Where are lipoproteins synthesised?
By the liver
97
Very Low Density Lipoproteins (VLDL)
Carry newly synthesised triglycerides from the liver to adipose tissue (if high: a sign of over-eating).
98
Low Density Lipoproteins (LDL), what they do and what they are needed for?
Carry cholesterol from the liver to cells of the body. Needed to repair cells, support cell membranes and synthesise sex and adrenal hormones.
99
High Density Lipoproteins (HDL)
Collect cholesterol from the body's tissues, bringing it back to the liver.
100
Phospholipids structure
Contain a glycerol part and two fatty acid chains. The phosphate head contains lots of -OH molecules which make it hydrophilic. It is, therefore, polar and water-soluble. The fatty acid tails are non-polar and interact only with other lipids. They are hydrophobic and fat-soluble. The fatty acid tails can contain saturated and unsaturated fats.
101
What is meant by ‘amphiphatic’ when referred to phospholipids?
They are soluble on one side and insoluble on the other
102
Steroids definition and structure
Are lipids that are formed from cholesterol. They differ in shape from triglycerides, where they are formed of four rings of carbon atoms joined together at their base. Sterols are steroid bases that contain an -OH group.
103
What are steroids used for?
To create hormones, e.g., oestrogen, testosterone, cortisol, etc.
104
Where is cholesterol produced?
Liver