Lecture 8 - Invertebrate Early Development II: The Drosophila body plan or Segmentation Flashcards

(53 cards)

1
Q

How does patterning occur?

A

patterning happens in a series of steps

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2
Q

What is segmentation?

A

An ancient & conserved way of building bodies
- segmentation is like building blocks of bodies and a segment is a repeating structure. A common group of repeating structures can then develop into legs etc.

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3
Q

Describe patterning of insects

A

Insects - like vertebrates are bilaterally symmetrical (two distinct & largely independent axes)
- A/P & D/V

Broad building blocks are symmetrical - e.g. arms & legs on each side

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4
Q

How is patterning already set up in the egg?

A

Fertilized egg (cleavage) - syncytial blastoderm (gastrulation) - embryo (hatching - 1st,2nd,3rd instar (Larva), Pupa (metamorphosis) - adult fly

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5
Q

How were almost all genes known to be involved in setting up the body axis identified?

A

in the Heidleberg screen

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6
Q

What did Heidelberg screen identify?

A

Both maternal & zygotic screens required for body patterning.
- researchers undertook a saturation mutagenesis to identify genes involved in the development & patterning of the larval cuticle

30,000 lines established & tested - 139 genes

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7
Q

What can you tell if an egg was dying?

A

A gene that is essential for development must’ve been hit

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8
Q

What are the 3 types of mutations that can be seen on a gene?

A

Mutations A - identical to another mutation A
Mutation B - same gene, different place
Mutation C - different gene

Each mutation alone will be lethal - we only have 2 copies of each gene.

2 lethal mutations on the same gene leads to death, but 2 lethal mutations in different genes doesn’t lead to death

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9
Q

What does a Mutation A & Mutation A give?

A

Phenotype (disease) - fail to complement

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10
Q

What does a Mutation A & Mutation B give?

A

Phenotype (disease) - fail to complement

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11
Q

What does a Mutation B & Mutation C give?

A

No Phenotype (no disease) - complement

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12
Q

What does a Mutation C & Mutation A give?

A

No Phenotype (no disease) - complement

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13
Q

Describe maternal vs zygotic genes

A
  • Mother puts RNA proteins into egg, before sperm entry. Genes that are put in are called MATERNAL GENES, while genes required in the embryo for lifetime are ZYGOTIC GENES.

Healthy mother no mutations - always deliver normal maternal contribution to embryo and any processes that require this will always happen as normal.

Mutations in mother and zygotes have both been screened

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14
Q

Describe maternal contribution vs zygotic genes

A

Many phenotypes seen can be put into different classes of mutants:

Gap genes (e.g. knirps)
Pair rule genes (e.g. paired)
Segment polarity genes (e.g. gooseberry)

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15
Q

Where is affected in a bicoid mutant?

A

Anterior - get 2 ends (no head)

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16
Q

Where is affected in a nanos mutant?

A

Posterior (lacks whole middle of embryo - much shorter embryo)

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17
Q

Where is affected in a torso mutant?

A

Terminal (lack head and back end - only torso)

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18
Q

How do maternal genes lay down the co-ordinates?

A

Maternal genes put in by the mother, and polarized in the egg, dictate what the ends of the embryo will be - alongside head & tail.

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19
Q

What is Bicoid?

A

Bicoid is a maternal gene which determines anterior.

Bicoid is a DNA binding transcriptional activator - maternally loaded into developing oocyte (anterior)

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20
Q

What is a classic experiment that shows that Bicoid acts as a morphogen?

A
  • pricking of front of egg and some cytoplasm leaked out, same phenotype as Bicoid mutant
  • concluded that whatever was making anterior of egg was in the cytoplasm.
  • if you take a Bicoid mutant egg & cytoplasm of normal egg - what happens? Found that cytoplasm was not just required for anterior, but also sufficient to rescue the loss of head & anterior structures found in Bicoid mutants - PARTIAL RESCUE

Steps in different experiment:
- normal development
- removal of cytoplasm in the front lead to loss of anterior structures
- partial rescue
- ectopic head structures and mirror imagine thoracic segments (if placed in the middle)

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21
Q

How can Bicoid morphogen activity be linked to segmentation?

A

An embryo with no Bicoid and stains for abdominal segments, move up in the embryo and lose where anterior part of egg should be.

1 gene copy of Bicoid leads to some rescue of anterior & abdominal sections pushed back.

4 gene copy of Bicoid leads to expansion of anterior region and pushing back of posterior regions.

THIS REINFORCED THE IDEA THAT BICOID IS ACTING IN A GRADIENT

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22
Q

How does Bicoid function as a DNA binding transcription factor?

A

Functions via differential binding affinity in its target genes - some of its targets have weak affinity for Bicoid

Weak (low) affinity binding sites - requires lots of Bicoid (high concentration) to be activated - only activated in most anterior part where there are high levels of Bicoid

Strong (high) affinity binding sites - requires small amounts of Bicoid (low concentration) - it will be marked up and genes will get activated.

In the more middle regions of the embryo - small amounts of Bicoid - these genes are activated

23
Q

What are the threshold concentrations of Bicoid needed at different affinity binding sites?

A

High affinity binding sites - activated at lower threshold concentrations of Bicoid

Low affinity binding sites - need high concentration of Bicoid to be activated

24
Q

What are Gap genes activated by?

A

(largely) activated by the maternal genes , but also activate each other.

25
What is Hunchback?
Hunchback (lack back part of animal) is activated downstream of Bicoid activity, leading to gradient
26
What is Kruppel?
only activated at a certain threshold of Hunchback activity. This leads to a stripe activity of Kruppel.
27
What does Loss of Bicoid lead to?
Loss of Bicoid leads to low levels of Hunchback from the anterior to middle, which is sufficient to activate Kruppel in a broader region.
28
Describe how Gap genes activate 'Pair rule genes'
Pair rule genes are activated in pairs of stripes (either even stripes activated by one set of genes, while odd stripes activated by another set of genes). Expression of pair rule genes is controlled stripe by stripe Dependent on the interaction of positively and negatively acting Transcriptional regulations (many of which are Gap genes)
29
What genes come after Pair rule genes?
Segment polarity genes - patterning is further refines through these genes
30
What 2 things do segment polarity genes do?
1. tell a stripe which way is which - which way head/tail is pointing 2. Important in creating boundaries between stripes (tight lines of cells rather than wriggly) - very precise.
31
What is a para segment?
Para-segment is a pre-segment of a segment in an embryo. They don't align exactly - para-segments don't correlate precisely when referring to segments in larvae. Para-segments set up in the embryo & they are slightly out of line with where the segments form later on. Genes that polarize segments are important in ensuring segments know what front/back of segment is.
32
What does lack of segment polarity lead to?
Lack of segment polarity leads to inability to grip to food when moving around
33
What does loss of Hedgehog lead to?
Loss of segmental polarity
34
Describe the interactions between Hh, Wg and Eg establish para-segment boundaries
Hh & Wg feedback onto each other to maintain each others expression & refine segment borders Segment polarity 'sure up' boundaries through positive feedback. Hedgehog & Receptor is Patched. Hedgehog will only activate receptor in neighbouring cells. When these cells bind Wingless, it leads to the production of Hedgehog. They feedback onto each other to maintain each other's expression & define the boundaries. Key gene turned on downstream by Wingless is Engrail (Eg) - final class of genes. When these are activated, it stays on. It is a selector that maintains the fate of cell types.
35
How do interactions between Hh, Wg & Eg establish para-segment boundaries to control denticle pattern?
Hh maintains Wg expression which suppresses denticle development. Wingless expression only leads to expression of Engrail in neighbouring cells, LEADING TO THE FORMATION OF THE PARA-SEGMENTS.
36
What do selector genes do?
Selector genes give segments identity - informing where things like legs & arms will go
37
Where do expression of homeotic genes along the A/P body axis occur?
In the same order as the genes are within the genome - controlled by a combination of Gap & pair-rule genes
38
What does a homeobox contain?
Genes that contain a homeobox sequence (codes for a DNA-binding homeodomain). contain: - DNA binding - transcription factors
39
What are selector genes?
fate-determinants ('who am i' information to each of the segments). These genes are highly conserved throughout evolution and are Homeotic genes & are important in establishing A/P patterning Not only expressed in A/P patterning in embryo, but also linearly arranged on the chromosome, but also in the order that they will be expressed in the animal. The activation of selector genes are now controlled by a combination of Gap genes & Pair-rule genes. Combinatorial action feeding in to activate selector genes.
40
What is an example of Selector genes?
e.g. Antp (Antennaepedia) = when researchers misexpressed it in the eye region, it led to legs growing from eyes?
41
How does it work in other animals?
Length of germ band = how much of patterning is set up in very early in development.
42
What is an organism with a LONG GERM BAND?
Drosophila
43
What are pros & cons of a LONG GERM BAND?
Pros - quick - embryogenesis complete in just 24 hours Negatives - complicated - maternal genes, gap, pair-rule genes interact for every segment
44
What is an organism with a SHORT GERM BAND?
Tribolium (beetle) & Strigamia (centipede)
45
Explain how a beetle develops
- Start with head & thoracic segments - probably via an ancestral version of the system Drosophila now uses. - Add abdominal segments sequentially - posterior disc (proctodeum) appears to bud off segments as it gets smaller - Moderate complexity & not too slow - likely to represent the original 'ancestral' segmentation mechanism. Not a lot of body plan set up early in development Start with Gap genes & set up some segments, however segments are added on.
46
What is an advantage of SHORT GERM BANDs?
Not as complex as Drosophila and not too slow as bit of body then addition of segments after.
47
What is the centipede likely to represent?
Ancestral segmentation mechanism that we also have aspects of setting up our own body plan.
48
How are centipedes developed?
Centipedes don't have initial set up of body plan - only segments being made repetitively - through 'clock-mechanism'.
49
How does the 'clock mechanism' function?
A ligand binding to a receptor activates a transcription factor, that is one path. But if the transcription factor then represses the expression of the ligand then this occurs: Ligand --> activation of transcription --> lack of ligand --> lack of transcription factor --> ligand
50
What are the feedback loops in the Segmentation clock?
Feedback loops: - Notch activation causes down regulation of Notch ligand - time lag in response causes oscillation between strong & weak signalling levels - propagation of signal between cells causes wave of activation This can occur, as going from DNA to RNA to protein takes time, leading to segmentation.
51
What differences occur regarding segmentation between Short germ ancestors & Long germ insects?
Short germ ancestors (e.g. centipede - Strigamia): segmentation clock Middle germ band (e.g. beetles): proto-gap genes & segmentation clock Long germ insects (e.g. Drosophila): Gap genes
52
How does segmentation in vertebrates occur?
Notch, Delta & transcription factors drives the clock of segmentation in vertebrates. This can be seen in somite formation in zebrafish
53
In what pathway do the majority of known pacemaker genes lie in?
the Notch pathway (Notch/Delta segmentation clock - ancient evolutionary 'idea'