Luminal Infections and Disorders Flashcards
(189 cards)
What are the three main groups of microorganisms in the GI tract?
- Commensal
- Opportunistic
- Pathogenic
What are commensal organisms?
Commensals – normal inhabitant of the human body, living in communities – they form the microbiota
Colonize a lot of different environments on our body – hair, skin, oral cavity, colon, vagina, etc.
Neither the host or the microbe is harmed – both derive benefits from their relationship
What event has a big impact on the our microbiota early on in life?
Microbiota is largely established by the mother during birth
Passage through the birth canal, from the skin, breast-feeding and food
This then continues to develop throughout life
What benefits do microbiota provide the human host?
- Bacteria can help digest and process food which we can then absorb
- Promotes postnatal differentiation of the mucosal structures
- Physical barrier function
- Stimulates the immune system – allowing for immune system development
- Regulation of metabolism
- Colonization resistance against pathogens – fight off potential pathogenic bacteria
What benefits do humans provide to the commensal microbiota?
- Provide nutrients and growth factor
- Provide a protected habitat
- Means for dispersal – grow and thrive in gut and spread from there onwards
What are the main bacterial phyla represented in the colon?
Colon – main bacterial species represented – Bacteroidetes and firmicutes
What is an opportunistic pathogen?
Opportunistic pathogens - these are commensal microorganisms that can become pathogenic in specific situaitons.
- When a bacteria are housed in the GI tract – they are considered commensal
- Only when they cause disease do they become pathogens
- Opportunistic bacteria – sometimes cause disease in certain instances – note that disease is not required for survival but rather an accident e.g. When protective mechanisms are absent/reduced these bacteria can thrive causing disease
Examples in the gut:
* Escherichia coli
* Bacteriodes fragilis
* Enterococcus faecium/faecalis
What is a pathogenic microorganism?
Obligate pathogen - Need to cause disease to transmit between hosts (—> evolutionary survival)
Can produce asymptomatic infection (but ≠ commensal)
Infections are not necessarily more severe than with opportunistic pathogens
Examples:
* Escherichia coli – many different types
* Shigella dysenteriae
* Salmonella Typhi
* Campylobacter jejuni/coli
What is the difference between zoonotic and environmental microorganisms?
Two other categories to help us understand where pathogens come from…
What are the different factors in the gut that prevent infections from arising?
- Barrier function – epithelium – tight junction
- Intestinal microbiota – colonization resistance
- Mucus secreted through goblet cells – creates thick layer making it hard for the pathogen to pass through
- Local immune cells – Gut associated Lymphatic tissue – APCs, lymphocytes, Paneth cells, etc. – providing protection + secreting antimicrobial peptides
- Lumen pH
- Low oxygen tension – low amount of oxygen in the gut – most microbes are anaerobes
- Flow rate – peristalsis – wash out bacteria
- Bile salts/ digestive enzymes – toxic to bacteria
What are some different factors that could impact the normal protective factors, increasing the risk of opportunistic infection?
- Immunosuppression
- Disruption of barrier function – sepsis
- Antibiotic – disrupting normal microbiota
- Ileus – lack of motility/propulsion (appendicitis) - peristalsis is reduced – increased ability of the bacterial colonization
- Antacid drugs – disrupt pH
Do obligate pathogens require the normal protective factors to be disrupted in order to cause infection?
Obligate pathogen – don’t need the protective mechanisms to be disrupted in order to cause infections, rather it disrupts these protective factors by itself
What are some examples of how obligate pathogens disurpt the normal functioning of the GI tract?
- Toxin production – many different effects – attack the epithelium, disrupting it, causing inflammation, causing a perturbation in the environment
- Increase the flow rate – diarrhea
- Direct invasion properties – virulence ability – reaching and bypassing the epithelium
- Resistance to bile salts, enzymes and intestinal microbiotia
- Capsule/LPS – avoidance of the immune system
- Adherence and motility mechanisms
Some opportunistic pathogens can become obligate pathogen by picking up virulence factors
How do pathogens (opportunistic or obligate) cause diarrhea or vomiting (mechanism)?
Diarrhea
* 3x day, liquid more than 80% water and >300g per 24 hours
Two mechanisms:
* Secretory - microorganisms and toxin produced cause water loss from epithelium.
* Inflammatory diarrhea - direct damage to epithelium - release of proteins, blood, WBCs and inflammation of the epithelium
Vomiting
* Reflex
* Mechanisms of protection
* Stimulated by humoral and neuronal mechanism
* Obligate pathogens create toxins in the GI tract - sends a message to the brain – drives vomiting response – relaxation of the esophagus and contraction of the stomach – vagal nerve mediated
What are the four organisms that can cause GI infections that we’ll be focusing on?
- H. Pylori
- Vibrio Cholerae
- Shigella
- Clostridioides difficile
H. Pyrlori
* Gram-staining
* Is it common?
* How is it transmitted?
* What area of the body does it colonize?
- Gram-negative
- Widespread across the world – present in 50% of western adults
- Transmitted through food and water
- Colonizes the human stomach (little bit of duodenum) – able to…
1. Survive in acid environment – microaerophile - needs oxygen but not too much – matches stomach
2. Motility (able to move through mucus to get through to the wall of the stomach)
3. Urease activity (enzyme transforms urea into ammonia – which is alkali, creating a H+ buffer)
What are the clinical features, method of diagnosis and treatment for a H. pylori infection?
Main clinical features
* Gastritis – mucosa becomes inflamed
* Gastric and duodenal ulcers
* Increased risk of carcinoma
Diagnosis
* Gastroscopy with biopsy (invasive)
and/or
* urea breath test (give radioactive protein to eat – if H.P present – we get radioactive ammonia in the breath)
and/or
antigen in stools
Treatment - Three antibiotics
Vibrio Cholerae
* Gram-staining
* How is it transmitted?
* What is the bacteria sensitive to?
* What area of the body does it colonize?
* Virulence factor
- Gram-negative
- Transmission < contaminated water or food (seafood!)
- Sensitive to drying out, sunlight and acid – need high bacterial load to transfer as a result
- Colonizes - Mainly acting the jejunum and the ileum
- Virulence factors - Secretes toxin and adheres to mucosae (Pili)
What is the mechanism that drives diarrhea production in V. Cholera infection?
Not invasive pathogen – produces toxin - consisting of a A and B subunit
B subunit – binds to the GM1 receptor – A subunit enters the cell where it activates adenylate cyclase – increase cAMP – increasing Cl- secretion and reduced absorption of Na+ - resulting in a net flow of water out
V. Cholera
What are the clinical features?
How is a diagnosis made?
What is the treatment?
Clinical features
* Watery secretory diarrhea (Rice-water stools) – Water and mucus – no protein, blood, WBCs, etc.
* Causes severe dehydration
Diagnosis - Clinical aspects and stool culture
Main treatment – rehydrates (IV ideally) and potentially antibiotic
Shigella
* Gram-staining
* How is it transmitted?
* What area of the body does it colonize?
* How many species are there? Which is the main?
* How does it cause pathology?
- Gram-negative
- Transmission - contaminated water or food, very low infectious load - very communicable
- Site - Large Colon
- Four species - S. dysenteriae, S. flexneri, S. boydii and S. sonnei
- Invasive pathogen - invades the epithelium and causes Inflammation of the gut. Does produce toxin but not the main mechanism.
How does shigella cause infeciton?
- Enter gut epithelium through M-cells (responsible for presenting antigens to immune cells) – trojan horse - allowing them to spread through the epithelium.
- They become ingested by macrophage at the basal side – macrophage dies releasing a huge amounts of cytokines resulting in tissue destruction
Shigella
* What are the clinical features?
* What are the complicaitons?
* How is a diagnosis made?
* What is. the treatment?
Clinical Features
* Bacterial dysentery – bloody diarrhea (+pus/mucus) + abdominal cramps and fever – three main features
* Complications – toxic megacolon and systemic – autoimmune (guillain barre syndrome)
Diagnosis – Stool culture + PCR
Treatment – supportive and antibiotics (Ciprofloxacin and azithromycin)
Clostridioides Difficile
* Gram-staining
* How is it transmitted?
* What area of the body does it colonize?
* What promotes/increases risk of C. Difficile infection?
* How does it cause pathology?
- Gram-positive
- Transmission - Environmental pathogen - forms resistant spores - common in health care facilities
- Site - Colon
- Promoted by antibiotic use - disrupts normal microbiota
- A combination of direct cellular damage and immunopathology