MCM Test 1 Flashcards
(147 cards)
What makes up a nucleotide?
Phosphate group, nitrogenous base, sugar
Which nucleotides are purines?
Adenine, Guanine
Which nucleotides are pyrimidines?
Thymine, Cytosine, Uracil
Between which molecules are phosphodiester bonds created?
Between a sugar (deoxyribose or ribose) and phosphate of the next nucleotide.
What is mRNA?
Messenger RNA. Transcribed from DNA and will be translated to a protein. Carries genetic code for protein.
What is rRNA?
Ribosomal RNA. Structural and functional components of the ribosome.
Which carbon contains or lacks a -OH group that characterizes the sugar as a ribose or deoxyribose?
2’ carbon. Deoxyribose has -H while ribose has -OH at 2’ spot.
What is tRNA?
Transfer RNA. Helps incorporate amino acids into polypeptide chain.
Where is pre-modified RNA found in a eukaryote?
Nucleus
Where is a N-glycosidic bond formed?
Between nitrogenous base and sugar.
What is RNAse H?
Machinery in DNA replication.
Replaces RNA primer with DNA
Senesence
When a cell is tagged to no longer duplicate
Related to telomeres degrading into coding DNA
Nucleosome
contains 8 histones wrapped by DNA.
histones= +
DNA= -
Heterochromatic v Euchromatin
Heterochromatin- condensed, silenced genes
usually on periphery of nucleus
Euchromatin- accessible to transcription/replication
Epigenetics
Histones have tails that can be modified to change chromatin structure
Modifications passed down
proteins maintain histone changes.
How is RNA polymerase different from DNA polymerase
RNA poly:
can start without primer
has intrinsic helices function
is more error prone
Types of RNA Polymerase
RNA Polymerase 1= rRNA
RNA Polymerase 2= All protein coding genes
RNA Polymerase 3= tRNA
remember 123 RAT= rRNA, All, tRNA
Initiating Transcription
TFIID- recruiter first and contains TATA binding protein (TBP), activates RNA poly II –> TFIIB, TFIIF, TFIIE, TFIIH
TFIIH- phosphorylates SER 5 on RNA Pol tail which initiates it.
other factors fall off and RNA Pol is released from promoter.
5’ capping
Methylated guanine cap added to 5' end RNA pol carries proteins that are transferred at specific time. Capping protein- binds to tail when SER 5 is phosphorylated Enzymes Phosphotase- removes Pi from 5' end Guanine transferase- adds GMP Methyl transferase- adds methyl
Splicing mechanism
specific A in intron attacks 5’ end and covalently bonds
3’ exon end will attack 5’ of other part
GU and AG are coming beginning/end of intron
Machinery: splicesome
Splicesome
protein and RNA molecules
Assists with splicing.
Poly A tail
RNA poly II recognizes poly A and cleavage signals
cstF and CpsF travel with RNA poly and get transferred to 3’ end
CstF= Cleavage stimulating factor CpsF= cleavage and polyadenylating factor
additional poly A bind proteins attach add length and shape
What does a mRNA need to be transported out of nucleus?
Nuclear export receptor
Transcription Factors
Bind to specific DNA upstream of promoter
two domains
DNA binding domain- binds specific DNA sequence
Activation domain- interacts with transcription factors
to initiate transcription