Micro Final Exam Flashcards

(95 cards)

1
Q

Amount of cells in shoes are microbes?

A

High percentage

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2
Q

Micro biome

A

A functional collection of different microbes in a particular environmental system

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3
Q

Human micro biome

A

Massive assembly of microbes in and on the body

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4
Q

Microbiota

A

Types of organisms in an environmental habitat

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5
Q

What is not microbe free on the body?

A

The eyes
Most of the body is microbe free

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6
Q

Bacteria on the skin

A

Predominant species: propionibacterium
This bacterium is important in food production. Creates gases to make swiss cheese

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7
Q

Microbes in the colon

A

Most are obligate anaerobes
Most are bacteria that are Gr+ organisms
E. Coli are less than 1% of the microbial population

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8
Q

Enterotypes

A

Microbial communities in the colon
1. Bacteroides - enriched
2. Prevotella - enriched
3. Ruminococcus

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9
Q

Colon microbiome role

A

Impacts health of the individual
Metabolites produced by microbes
Inflammation
Fighting off pathogens/infections
Affects your health and emotional well-being

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10
Q

How are enterotypes studied?

A

Genomic sequencing
Mice- good model organisms but not great due to differences in morphology/structures of the G.I. tract

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11
Q

Germ-free mice

A

C-section birth and in a sterile environment
Not as healthy as birthed mice

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12
Q

Difference between vaginal and C-section births regarding baby’s microbiome

A

Vaginal birth- baby’s gut biome is similar to the mothers

C-section- Get microbiome of baby is different than the mothers (typically)
Has similarities of microbiome of the mom’s skin and her mouth

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13
Q

How being fed breast milk affects babies

A

Antibodies are present in breast milk that contain oligopolysaccharides- resembles carbohydrates lining the infants colon
This helps suppress infections because pathogens bind to receptors on the host cells that are lining the colon. Instead of the lining they will now bind to the oligopolysaccharides to block pathogens from the baby

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14
Q

Microbial populations in infants. How does it change over time?

A

Rapid succession of microbial populations ages 1-3
By age 3 it starts to stabilize

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15
Q

How does microbial species change when breast feeding stops?

A

Increase in species that degrade dietary fiber

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16
Q

The adult microbiome

A

Thousands of species live in the large intestine
Each individual has 200 or fewer species
Species are likely shared with family members

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17
Q

Impact on adult health regarding microbiome

A

Over or under producing metabolites
IBS- irritable bowel syndrome
Broad diagnosis because there are many types

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18
Q

Elderly microbiome

A

Overall decrease in colon microbial diversity

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19
Q

Cause of Crohn’s disease

A

Miss specific type of bacterium in their microbiome

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20
Q

Effects of germ free mice on the immune system

A

Immune system does not develop properly in the absence of microorganisms
Proves exposure to microbes helps to develop tolerance to organisms in the microbiome

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21
Q

Tolerance

A

The acquired inability to produce an immune response to specific antigens (microbes)

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22
Q

What will happen with a decrease in the exposure to microbes?

A

Lowers the diversity of microbiomes and this contributes to inflammatory diseases later in life

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23
Q

exposure

A

tolerant well controlled immune system

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24
Q

Germ free mice

A

Sterile environment
Can keep colony going –> normal breeding
Underdeveloped immune system (both innate and adaptive)

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25
Intestine immune system
Dedicated adaptive immune system monitors and shapes the microbiota without causing the inflammation Microbiome trains the immune system and the immune system then shapes the microbiome
26
Bacteria in the intestine
non-invasive Interact with receptors in the epithelial cells which does not generate a major response
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Pathogenic bacteria
May be invasive Activated receptors and immune system
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Gut-brain axis
Microbiota communicates chemically with the brain Can impact variety of areas: endocrine, nervous,, immune systems, aspects o metabolism of host
29
Gut microbes
Produce A.A.'s people need Vitamins and metabolites needed for health of individual
30
Example of gut microbe
tryptamine- Functions as neurotransmitter in host of individual
31
What is not associated with intestinal microbiota?
He elected to not answer this question but I think its Autism
32
Environmental risk factor of autism
the maternal immune activation (MIA)
33
MIA
Elevated levels can be caused by inflammatory factors during pregnancy like viral infections
34
MIA studied in mice
Mothers were induced to have MIA Offspring display autistic like behaviors
35
4-ethylphenyl sulfate in regards to the MIA study
Present in higher levels in the autistic like mice Control mice injected would show autistic like mice symptoms
36
MIA offspring from mice experiment
Increased levels inflammatory factors Gave the offspring Bacteroides species The species displaces the species that produces 4-EPS. Behavior changes were normal
37
Dysbiosis
Imbalance in microbial composition which can lead to inflammatory diseases such as stress, changes in diet, taking antibiotics
38
Does antibiotic use early in life affect IBS diseases?
Yes it can lead to IBS
39
IBD
Lower bacterial/microbial diversity in the intestinal tract Example is Crohn's disease which is missing the species Faeciabacterium prausnitzii
40
Faeciabacterium prausnitzii
~5% of adult fecal microbiota Species has anti-inflammatory molecules released
41
Toxic shock syndrome
Staph aureus infection Hyperactivates immune system Hypertension, low bp, multiple organ failure, fatal without treatment
42
How bacteria have immunity
Restriction enzymes DNA endonucleases which target specific sequences Enzymes cleave viral DNA Don't cleave host DNA because they are modified via methylation
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CRISPR
Immune system in microbes that provides memory
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Vaccines
Expose the body to an infectious agent Goal is to produce memory B cells Vaccines attenuated are weakened or can be inactivated (dead strain)
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Smallpox
Caused by a virus Lesions Secondary infections Mortality rate could be as high as 30%
46
Examples of variolation being used ~2000-few hundered years ago
Was used in china ~2000 years ago and in turkey ~ couple hundred years ago Would expose people to mild cases of small pox so people would get immunity to disease
47
Jenner (British Physician)
Was exposed to small pox as a child He noticed people on farms had immunity to small pox Dairy maids and cow hands did not get small pox after they had cowpox He took an eight year old child and exposed him to cowpox He then exposed the kid to small pox weeks later and the kid got no smallpox He repeated this experiment with a larger group of individuals. ~20 people Cowpox was successful in preventing small pox People were then inoculated with cow pox to prevent small pox Number of small pox deaths went down because of this
48
Wakefield Study
12 children mmR vaccine payroll of pharma company with 1 vaccine in 1 and not 3 like the mmR vaccine Study was published in 1998 and retracted in 2010 Hospital records of the children did not match the data of the paper Children were not randomly selected and had health issues from vaccine. Other authors were unaware he was making these claims He got paid to leave the college he was working at because of this shitty paper Paper is the foundation of vaccine hesitancy He gave kids vaccines around the time autism symptoms begin in autism patients correlation does not mean causation
49
Polio
Major health concern for the large part of the 20th century Got polio during the summer: paralyzed and iron lung
50
O'Connor
Started the march of dimes used movie stars to ask people to donate a dime to help people with polio After time donations ore off, then he used fear
51
Polio 1950 vaccine
Millions of parents made their kids take an unapproved FDA vaccine
52
Pathogen
Organisms that grows in/on host that causes disease
53
Pathogenicity
Ability of an organism to cause disease
54
Adherence
Enhanced ability for microbe to attach to cell surface Is required to initiate disease Not sufficient to cause disease
55
Portal of entry
Sit of infection Step pneumonia killed by stomach acid when swallowed. Can adhere and cause infections in the respiratory tract
56
Adhesions
Receptors on the pathogen surface that allow them to adhere to hind to the host Glycoproteins/glycolipids Capsules of bacteria. Can allow for microbe to evade the immune system. Any typically polysaccharides or protein fimbriae, pili
57
Colonization
Growth of microbe after adhesion to host (happens in mucus membranes)
58
What is caused by different microbes interacting with each other?
Dental caries Community of interacting organisms
59
Organisms involved in dental caries
Streptococci involved with this Secrete LA (lactic acid) after fermenting glucose Will also use the sucrose to produce the capsules which allow organisms (other ones) to grow
60
Invasion
Ability of pathogen to enter host cells/tissues In doing so can spread and cause disease Have bacteremia and septecemia
61
bacteremia
presence of bacteria in blood
62
septecemia
bacteria multiply in the blood massive inflammation, septic shock, death
63
Virulence
Measurement of pathogenicity Relativity of pathogen to cause disease can be quantified by dosage of pathogen LD50
64
LD50
Number of cells/viral particles to cause 50% death of the animals Is an experimental test
65
Very virulent pathogen
only requires small number of microbes to cause disease
66
What does virulence depend on
It depends on genetics and physiology of host and pathogen
67
Clinical microbiology
Area of interest would be nosocomial infections acquired within the hospital People are sicker than the general public there Lots of antibiotics are used there Pathogens present in areas of the hospital can spread
68
Nosocomial infections
Nosocomial infections are infections that develop during a patient's stay in a healthcare facility, such as a hospital, nursing home, or clinic, and were not present at the time of admission. An infection acquired in a hospital or other healthcare setting that wasn't present at the time of admission. These infections can be caused by a variety of pathogens, including bacteria, viruses, and fungi, and can lead to serious health complications. ~2 million nosocomial infections per year Of those 5% mortality rate
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Exotoxins
Toxic proteins released by cells ex. neurotoxins- block release of neurotransmitters
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Virulence factors
produced by the pathogens and can contribute to making people sicker enzymes, proteins, nucleases, proteases, lipases Will all degrade host cell molecules
71
Botox
Neurotoxin produced by C. botulinum (causes botulism in infants and food poisoning) Inhibits release of neurotransmitters Blocks the release of acetyl-choline to cause less muscle contraction Get flaccid paralysis
72
Enterotoxins
Toxins released intestinal tract Vibrio cholerae- causes cholera, water contamination with feces
73
Vibrio cholerae toxins explained
2 toxins: B subunit- binds to epithelial cells in intestine A subunit- s=crosses the CM and enters the host cell. Activates the host adenyl cyclase (takes ATP and makes cAMP + PPi) High levels of cAMP blocks Na+ uptake by the epithelial cells Induces secretion of Cl- ions as well as bicarbonate Now high Na+ and Cl- outside of the cells Excessive water loss via osmosis which causes the symptoms of dehydration and diarrhea. Therefore they need water as a treatment
74
Advantage of being cystic fibrosis heterozygous
Lose fewer Cl- ions, lose less water, more likely to survive cholera
75
Endotoxins
Lipopolysaccharides from gr- cell wall Are released when bacteria cell dies When released causes inflammation, release of cytokines, blood clots, and more.
76
Epidemiology
The study of outcomes, distribution, and determinants of health and disease in populations Identifying and solving problems with infectious disease transmission Trace spread of disease to identify origin and transmission
77
Incidence
Number of new cases
78
Prevelence
Number of new and existing cases (total # of cases)
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Pandemic
A world wide epidemic
81
endemic disease
Constantly present (common cold, influenza)
82
Better pathogens
Ebola Rhinovirus
83
Rhinovirus
Does not kill host so is a better pathogen. Example of well adapted pathogen that lives in balance with host
84
Morality
Incidence of death
85
Morbidity
Incidence of disease
86
What would classify something as a new disease?
Susceptible population (not been exposed to pathogen) Rapid spread overtime- evolutionary success of pathogen. Equilibrium with host
87
Rabbits in Australia
Myxoma virus which was deliberately introduced to kill rabbits Initially 95% mortality rate Overtime virus evolved to equilibrium with host and became much less virulent
88
Herd immunity
Spread of an infectious disease is different if the population has immunity People get immunity from previous exposure to the virus or by vaccinations Therefore people without prior exposure are protected
89
Measles herd immunity
Herd immunity level of 90-95%
90
Secretary Kennedy (RFK)
Vitamin A for measles- does help with measles in Africa- individuals are deficient in this vitamin in Africa Vitamin A is soluble vitamin- therefore accumulates in the body If you take too much vitamin A = bad (get toxicity)
91
How to figure out the means of transmission for diseases
Need to understand the mechanism for the disease
92
Tuberculosis (Consumption)
Spread slowly, slow-growing bacterium Strains can convert to antibiotic resistant
93
Before COVID, what was the worst pandemic in the US?
Influenza of 1918
94
Influenza pandemic 1918- "Spanish Flu"
Killed young adults aged 20-40 Why? Studied 1918 flu recovered 1918 virus from permafrost. Tissue samples were collected and stored in formaldehyde Was sequenced and compared to other viruses Recombinant viruses- looked at genes associated with mortality. Specific mutations in viral genes- see LD50
95
Why did the 1918 flu kill 20-40 year old's the most?
First exposure to influenza strains were very different than the 1918 strain Therefore the people had no immunity, some had large immune responses, and there was fluid build up in the lungs People born in 1900-1918 had a different flu strain circulating population at this time which was more similar to the 1918 strain Therefore they had more partial immunity and had a higher rate of survival likelihood than the 20-40 year old's.