Microbiology Flashcards

(54 cards)

1
Q

What is the name of the last universal common ancestor?

A

LUCA

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2
Q

List the 4 key principles of koch’s postulates

A

1- suspected pathogen must be present in all cases
2 - suspected pathogen must be grown in a pure culture
3 - cells from pure culture must cause disease in healthy animal
4- suspected pathogen must be reisolated and shown to be same as original

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3
Q

List the types of light microscopy

A

bright field
phase-contrast
dark-field
fluorescence

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4
Q

Which type of microscopy kills specimen?

A

bright-field

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5
Q

What type of microscopy uses polarised light?

A

differential interface contrast microscopy

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6
Q

Which type of microscopy measures forces between a probe and atoms on surface of specimen?

A

atomic force microscopy

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7
Q

Which type of microscopy couples a laser source to a fluorescent microscope

A

confocal scanning laser microscopy

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8
Q

What type of microscopy allows structures to be seen at the molecular level?

A

transmission electron microscopy

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9
Q

What type of microscopy shows the external surfaces of the cell?

A

scanning electron microscopy

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10
Q

What steps are required to construct a phylogenetic tree?

A

1 - isolate DNA
2 - make copies of rRNA gene by PCR
3 - sequence DNA
4 - analyze sequence
5 - generate phylogenetic tree

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11
Q

Where do protozoa live?

A

in soil, wet sand, fresh and salt waters

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12
Q

What are endospores?

A
  • highly differentiated cells
  • produced by certain bacteria
  • resistant to heat, harsh chemicals and radiation
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13
Q

Describe the process of sporulation

A

1- essential nutrient is exhausted
2- vegetative cell stops growing
3- endospore develops within vegetative cell and is released
4- spore can remain dormant and germinates when conditions are good

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14
Q

How are endospores visualised

A

unreactive to most dyes - seen as unstained regions

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15
Q

What enables cells to stick to surfaces and each other?

A

fimbriae

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16
Q

List the functions of pili

A
  1. conjugation
  2. adhesion to specific host tissues and subsequent invasion
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17
Q

Describe the different attachment points of flagella

A

polar flagellation - attached at one or both ends
a tuft - group of flagella attached to one end
peritrichous flagellation - inserted at many locations

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18
Q

Where does the energy for rotation come from?

A
  • proton movement across membrane through Mot complex
  • exert electrostatic forces on helically arranged charges on rings
  • attraction and repulsion drives rotation
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19
Q

What is meant by twitching motility

A

repeated extension and retraction of type IV pili

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20
Q

What is myxobacteria?

A

form fruiting bodies

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21
Q

Describe the life cycle of myxobacteria

A

1 - myxospores
2 - germination (gram-negative)
3 - vegetative growth cycle (gliding)
4 - aggregation
5- mounding
6 - differentiation

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22
Q

What are chemolithotrophs?

A
  • feed on organic bacteria
  • can oxidise H2, H2S and NH3
23
Q

Describe the process of nitrogen fixation

A

N2 —> nitrogen fixation —> NH3 —–> nitrification —> NO-2 + NO-3 —–> denitrification —> N2

24
Q

What catalyses nitrogen fixation?

A

nitrogenase
dinitrogenase –> contains iron and molybdenum
dinitrogenase reductase –> contains iron

25
What organisms perform nitrification?
nitrosomonas, nitrobacter
26
What is the most important contributer of CO2 to the atmosphere
microbial decomposition of dead organic material and humus
27
Write an equation for generation time
time/number of generations in time
28
Write an equation for calculating growth
N=N02^n n = logN-logN0/0.301
29
List the phases in the growth cycle
lag exponential stationary death
30
What causes a longer lag phase?
cells must start synthesising essential metabolites
31
What causes the death phase?
organism's waste products build up to toxic levels
32
Describe the types of microbes found deep in south africa
- chemolithotrophic and autotrophic - use H2 as electron donor for respiration - nitrogen fixing capacity
33
What is the difference between planktonic and benthic microbes?
planktonic - floating benthic - attached to bottom or sides of lake/stream
34
What contains the largest microbial biomass on the surface of earth?
oceans
35
List the classes of microbes according to their temperature optima
- psychrophile - mesophile - thermophile - hyperthermophile
36
List some examples of anoxic habitats
muds, bogs, marshes, waterlogged soils, intestinal tracts, sewage sludge, deep subsurface
37
What is meant by facultative microbes?
can grow under either oxic or anoxic conditions
38
What are microaerophiles?
aerobes that can only use oxygen when present at levels lower than air
39
What is meant by aerotolerant?
anaerobic but can tolerate oxygen - do not use oxygen in their metabolism
40
What is a psychrophile?
- optimal growth temp of 15 degrees - psychromonas - sea ice bacteria - found constantly in cold climates
41
What is meant by psychrotolerant?
optimum temp between 20 and 40 degrees found in meat, dairy products, cider, veg and fruit at standard refridgerator temps
42
Describe the adaptions to enzymes for cold climates
primary structure - more polar amino acids - fewer weak bonds secondary structure - greater a-helix - less b-pleated sheet
43
Describe the adaptations to the plasma membrane for cold climates
high content of unsaturated and shorter-chain fatty acids
44
What are cold-shock proteins?
maintain other proteins activity and bind specific mRNA to facilitate translation
45
What are cryoprotectants?
solutes that prevent formation of ice crystals in cell
46
Where are thermophiles found?
- edges of hot springs - soil surfaces - fermenting environments - artificial environments
47
What temps are thermophiles and hyperthermophiles found at?
thermophile - >45 hyperthermophile - >80
48
Describe the adaptions to enzymes for hot climates
- more ionic bonds between amino acids - hydrophobic interiors
49
What induces positive supercoils into DNA?
reverse DNA gyrase
50
Describe the adaptations to the plasma membrane for hot climates
- more saturated fatty acids - more long-chain fatty acids
51
What do hyperthermophile membranes contain?
- NO FATTY ACIDS - have C40 hydrocarbons - units of isoprene bonded to glycerol phosphate by ether link - forms a monolayer
52
How do alkaliphiles generate a protonmotive force for transport?
via sodium
53
What is the difference between halophiles and halotolerants?
halophiles - require NaCl for growth halotolerant - can tolerate NaCl but grow best in absence
54
List some examples of compatible solutes
- glycine betaine - sucrose - trehalose - glycerol