Midterm 1 Flashcards

(46 cards)

1
Q

Brightfield - light microscopy (up to 1000x)

A

pigmented or stained specimens
- high contrast
- not motile (have to kill)
- good for morphology (white background on average)

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2
Q

phase contrast -light microscopy (up to 1000x)

A

non pigmented - (low contrast specimens
- can be motile
- make noundaries pop. white boundaries

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3
Q

fluorescence -light microscopy (up to 1000x)

A

view cells/structures labeled with a fluorochromes
- bright
- absorb/admits light
confocal flurescence - high resolution 3d image. use software (not typically alive)

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4
Q

scanning - electron microscopy (50000x)

A

exterior of specimen
- topography
-fine details
- processing of organism

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5
Q

transmission - electron microscopy (50000x)

A

internal structure
- high resolution
- dark circles = electron dense (electron cannot go through)
- lighter background = electrons can pass through

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6
Q

traits of gram negative bacteria

A
  • stains pink for gram stain
    bacterial envelope:
  • cell membrane
  • lipopolysaccharide (LPS)
  • THIN peptidoglycan
  • outer membrane
  • PG-associated protein (LP)
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7
Q

endosymbiotic theory

A

1) ancestral eukaryote + aerobic bacteria = mitochondria
2) early eukaryote + photosynthetic bacteria = chloroplasts

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8
Q

evidence that mitochondira and chloroplasts deruve from bacteria

A

size, singular chromosomes, 70s robosome, division by binary fision

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9
Q

traits of gram positive bacteria

A
  • stains purple for gram stain
    bacterial envelope:
  • cell membrane
  • THICK peptidoglycan
  • teichoic acid (TA)
  • PG- associated protein (LP)
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10
Q

eukaryotes

A

a group of individuals that can reproduce naturlly and produce fertile offspring
- mebrane bound organelles
- nucleus = house of DNA

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11
Q

prokaryotes

A

cannot determine simply by shape or size. they look very similar.
- do not use kingdom to classify anymore

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12
Q

binary fission

A

exponential
- explains why you can get sick easily

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13
Q

solutes that can pass through a phospholipid bilayer via simple diffusion

A

nonpolar, small proteins

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14
Q

semi- log

A
  • makes easier to read
  • fastest growth/death = straight line
    ** lose resolution as with a high increase
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15
Q

hypertonic environment

A

water is drawn OUT the cell
- causes plasmolysis (loss of cytoplasm volume)

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16
Q

isotonic environment

A

same concentration inside and outside the cell

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17
Q

turbidity (optical density)

A
  • more cells = more scatterring = higher optical density (can see through boba/scatterrign light)
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18
Q

hypotonic environment

A

water draw INTO the cell
- more water inside the cell and membrane has to expand

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19
Q

peptidoglycan cell wall components

A
  • made up of meurin proteins
  • N-Acetylglucosamine (NAG)
  • N-Acetylmuramic acid (NAM)
  • linked by transglycosylase
  • short peptides linked by trasnpeptidase
20
Q

growth curve

A

1) lag phase - lost of metabolic activity but no increase
2) exponential phase - doubling at a relatively constant pace
3) stationary phase - no net chnage (nutrients = waste)
4) Death phase - conditions are so bad they are dying by log

21
Q

periplasm hydrolytic enzymes

A
  • breaks down into digestible units
  • phosphatases, proteases, endonucleases
22
Q

periplasm peptidoglycan synthesis proteins

A
  • builds more cell wall
  • transglycolylases, transpeptidases
23
Q

periplasm chemoreceptors

A
  • recognize and transport molecules
  • chemotaxis, germination
24
Q

periplasm detoxyifying enzymes

A

-detoxifying poisons

25
infectious dose (IDx)
x= required for x% of cells to be infected - n = # gens - g = generation time/ doubling time
26
surface layer (s-layer)
crystalline layer of protein for protection in bacteria and archaea
27
culturing organisms
1) nutrients a) macronutrients - CHONPS b) macrominerals (enzymes, cofactors, metals) c) Microminerals - trace amounts growth factors - amino acids, vitamins, etc 2) incubation conditions a) lighting, atmosphere, temp, pH, sollute concentration, hydrostatic pressure
28
extremophiles
extremes
29
slime layer and capsule
keeps the organism moist and helps with adhesion
30
archeal envelope
- has ether linkage - may have pseudomurein - isoprenoids in the inner lipid membrane
31
thermophiles
love heat (above 50 C)
32
hyperthermophiles
rlly love heat (above 80C)
33
mmesophiles
humans (37 C)
34
bacterial and eukaryotic envelope
has ester linkage
35
psychrophiles
fear heat (10C)
36
flagellar structure
- hook - filament - basal body (motorized rings and motor protein) - flagellar monomer (assembles flagella filament) - cap proteins (cap ends of filament)
37
halophiles
love salt
38
acido/alkaliphiles
love acid/basic conitions
39
barophiles
love high pressur e
40
flagella attatchement
gram + - goes through cell wall, but no outer membrane gram - - goes through cell wall and outer membrane
41
Q10 rule
every 10 C increase, rxn speeds up 2-3X (granted depending on optimal temp range). - require an appropriate amount of fluidity of membranes
42
bacterial pilus
- helical polymer - used for attatchment - used for conjugation - occasionally twitching motility
43
things in the cytoplasm
- cytosol - cytoskeleton - nucleoid - ribosomes - inclusions and vessicles
44
cytoskeleton
- bacteria have homologs of eukaryotic cytoskeletal proteins - archaea have it as well
45
bacterial genome
- singular circular chromosome - condensed and organized - may have circular plasmids
46
inclusions (microcompartments)
carboxysomes - encloses CO2 fixation machinery thylakoids - membrane stacks to increase surface area - used for photosynthesis reactions (light reactions) gas vesicles - protein shells for buoyancy for non-swimming organisms magnetosomes - magnetic crystals allowing certain bacteria to navigate to north or south