Midterm Flashcards
Taxonomy
- naming and categorizing organisms
- Based on shared traits
i. Morphological traits – physical appearances - Used first – didn’t always have other technology
- Not the most accurate
ii. Developmental features/processes
iii. Molecular (e.g. gene/protein sequences) - Carolus Linnaeus (1707-78)
a. Developed the Binomial scientific naming system Genus species
i. Latin names for consistency
ii. E.g.: Homo sapiens; Vulpes vulpes
b. Developed a formal hierarchical system of taxonomy – dear king Philip came over for good soup
i. species – smallest (names are italicized)
ii. genus (names are italicized)
iii. family
iv. order
v. class
vi. phylum
vii. kingdom
viii. domain – largest - Taxon (plural: taxa) – general term for any of the taxonomic units; e.g. the family taxon is comprised of multiple genera (plural of genus).
Homology vs analogy
- Homology – similar morphology and DNA due to shared ancestry
a. Homologous structures can be
i. Similar structure (not always obvious) - Ex. a limb – all have humerus, carpals, metacarpals (etc..)
ii. Same or different function - Ex. arm, bat wig, cat leg, whale fin
iii. Derived from common ancestor - Ex. human, cat, whale, bat – all derived from common ancestor
- Analogy – similarity due to convergent evolution
a. Similar traits developed independently in order to overcome some sort of obstacle in distantly related species
i. Ex. birds and moths – analogous structures
b. Analogous structures can be
i. Different structure (when you look closely)
ii. Similar function
iii. Due to convergent evolution
Phylogeny
- Phylogeny – the evolutionary history of a species or group of related species; ancestry
- Phylogenetic tree – grouped based on similarities
a. Closer together on tree = more similar
b. Structure
i. Nodes – branch point; speciation event - Speciation event – divergence of 2 species; a change in the DNA of an organisms to make it different enough to survive and become a new species
- Tree branches can be rotated around a branch point
ii. Polytomy – a branch from which more than 2 groups emergy - Unresolved level of divergence among them
iii. Common ancestor – just before node; represented by branch point - Sister taxa – groups that share an immediate common ancestor
iv. Rooted tree – includes a branch to represent the last common ancestor of all taxa in the tree - Ancestral root
v. Outgroup – a more distantly related group of organisms that serves as a reference; similar enough to others in taxa but different - Phylogenies use
a. Morphologies (ex. fossil records)
b. Genetic sequences
c. Biochemistry of living organisms - Must show similarities due to homology, not analogy
a. Homology – organisms with similar morphologies or DNA sequences are likely to be more closely related than organisms with different structures or sequences
i. Homologies – phenotypic and genetic similarities due to shared ancestry
Systematists
- Systematists – classifies organisms and determines their evolutionary relationships; depicted as branching phylogenetic trees
- Used to infer evolutionary relationships:
a. Fossils
i. Ex. Archaeopteryx fossil – showing similarities between birds and Saurischian dinosaurs
b. Morphological data – doesn’t show homogenous DNA level
c. Biochemical data – more accurate; usually proteins
i. Ex. myoglobin proteins conserved in AA sequence and structure
d. Genetic data – more accurate; sequences diverge as species become more evolutionarily distant
i. E,x. DNA sequences – red differs
1. Human: atg gcc ctg tgg atg cgc ctc ccc ctg ctg gcg ctg gcg ctg
2. Chimp: atg gcc ctg tgg atg cgc ctc ccc ctg ctg gcg ctg gcg ctg
a. More similar to humans
3. Gorilla: atg gcc ctg tgg atg cgc ctc ccc ctg ctg gtg ctg gcg ctg
4. Dog: atg gcc ctc tgg atg cga ctc ccc ctg ctg gcc ctg gct ctg
a. The most distantly releated to humans
Research tools used to infer relationships
- DNA sequencing platforms
a. Researchers can now easily sequence specific genes from organisms to compare genes – cost is going down and many programs are available
i. Nanopore sequencer – oxford biotech; can sequence an entire genome in 24 hours; the size of a USB stick
b. Make sequences available to scientific community to test hypothesis - Genome sequencing projects – determining the sequence of all the DNA in an organism
- Computer programs and mathematical tools are used when analyzing comparable DNA segments from different organisms
a. Computer algorithms are used to score these changes – compare scores among species to find closest similarities
Cladistics
- Cladistics – groups organisms in phylogeny by common descent; groups of related species
- Clade – a group of species that includes an ancestral species and all its descendants
a. Not always 100% clear - Classifications
a. Monophyletic clade – consists of the ancestor species and all its descendants
i. “true clade”
b. Polyphyletic clade – grouping includes distantly related species; does not include their most recent common ancestor
i. Old school phylogeny – constructed before we had all the information
ii. Ex. cetaceans (dolphins) and seals – look similar but do not share the same most recent common ancestor
c. Paraphyletic clade – grouping consists of an ancestral species and some, but not all, of the descendants
i. Old school phylogeny
ii. Ex. excluding cetaceans – didn’t initially see similarities between dolphins and hippos - Phylogenies are getting revised constantly as more information is acquired
Shared ancestral vs shared derived
• Shared ancestral character – a character that originated in an ancestor
o Ex. vertebrate system of chordates – can be traced to all descendants
• Shared derived character – a character novel to a particular clade (not found in the ancestor)
o Ex. hair – not found on all descendants or in common ancestor
o Ancestor can be considered an outgroup if it lacks a character shared by all it’s descendants
• A character can be both ancestral and derived, depending on the context
Genome
- Genome is used to compare nucleic acids or other molecules to infer relatedness and determine evolutionary history
a. DNA coding for rRNA changes relatively slowly – useful for investigating branching points hundreds of millions of years ago
b. mtDNA (mitochondrial DNA) evolves more rapidly – can be used to explore recent evolutionary events - DNA Barcoding Project – can identify many species
a. Used against poachers (can detect type of animal from blood, hair, or meat
b. Used to detect which animal attacked human - rRNA and mtDNA are useful because
a. Easy to isolate these genes from material, even when tissue is old
b. Many copies of rRNA genes/genome
c. Many mitochondria/cell, each with mt chromosomes
Eukarya supergroups
- Excavata – unicellular euks in aquatic environment
a. Diplomonads
b. Parabasalids
c. Euglenozoans - SAR
a. Stramenopile
i. Diatoms
ii. Golden algae
iii. Brown algae
b. Alveolate
i. Dinoflagellates
ii. Apicomplexans
iii. Ciliates
c. Rhyzaria
i. Forams
ii. Cercozoans
iii. Radiolardians - Archaeplastida
a. Red algae
b. Green algae
i. Chlorophytes
ii. Charophytes
c. Land plants - Unikonta – many groups
a. Amoebozoans
i. Slime moulds
ii. Tubulinids
iii. Entamoebas
b. Opisthokonts
i. Nucleariids
ii. Fungi
iii. Choanoflagellates
iv. Animals
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The unikonta - 2 major clades
Two major clades
- Amoebozoans – slime molds, Amoeba sp, etc…
i. Amoebas – no symmetry; able to pump water to move through environment
b. Lobular pseudopodia – false limb - Opisthokonts – animals, fungi, and closely related protists groups (Choanoflagellates)
a. Animals – more closely related to fungi, slime molds, and amoebas, than plants
b. Fungi are very large – they form networks underground
c. Choanoflagellates – an outgroup for the animals
i. Similar morphology to sponges - Lots of diversity – not as much as other taxa
Animals
- diversity
- typical characteristics
- diplontic life cycle
- evolution of multicellularity
- 1.8 known species – animals make up the majority
a. Majority are invertebrates (1.25 million)
i. Not as much diversity in vertebrates (58,000)
b. Over 280,000 known plant species - Typical characteristics
a. Multicellular – specialized biological processes that occur in different tissues
i. Interconnected cells - Gap junctions – communication
- Tight junctions – hold/interconnect cells together
b. No cell walls
i. Unlike plants and bacteria – cellulose is primary component
c. Directional mobility – will have at some point in their life
i. Importance – food, shelter, reproduction, escape predators, migration
d. Heterotrophic – obtain energy by consuming energy producers or other heterotrophs
e. Specified embryonic tissue
i. Ectoderm – epidermis
ii. Mesoderm – muscle and skeletal structure
iii. Endoderm – mouth, digestive system, respiratory system, anus - Diplontic life cycle
a. Development
i. Gametes – haploid - Egg and sperm – fuse to form diploid zygote
a. Fusion of zygote – this is when we start to see evolution and mutations occur
ii. Zygote – diploid - Somatic cells
b. Ex. Xenopus frog – model system
i. Egg and sperm fuse – form diploid zygote
ii. Cleavage/mitosis occurs
iii. Early embryo late embryo
iv. Differentiates into tadpole
v. Metamorphosis – changes completely from requiring aquatic to being able to live terrestrially or aquatic enviro - Evolution of multicellularity
a. Choanoflagellates – common ancestor is shared with animals
i. Outgroup of animal clade – closely related but are unicellular
ii. Live in colonies – they look multicellular but are not
iii. Unicellular – anatomy - Body
- Collar – fingerlike projections
a. Made of microtubules
b. Used for movement - Flagella
iv. 3 lines of evidence that they’re closely related to animals - Cell morphology
a. Similar cell to porifera - Cell morphology unique to animal cells
a. No cell wall, no plastids - DNA sequence homology
b. Metazoa clade – multicellular organisms; synonymous with animalia clade
Grade vs clade
Clades – share a common ancestry
o Monophyletic clades – ancestor and all descendants
o Implies relationships – divergent evolution
Grades – share key biological feature only; usually come up through evolution to overcome obstacle
o No relationship between organisms
o Convergent evolution – unrelated groups finding similar solution to solving different problems
Eg. Coelom (body cavity), segmentation
10 major animal phylum - know the characteristics of each
- porifera
- cnidarians
- chordata
- ectodermata
- playhelmenths
- brachiopoda
- annelida
- mollusca
- nematoda
- arthropoda
- Porifera – sponges
a. Basal group – evolved early in the tree of life; earliest descent of animals
i. Doesn’t have all the properties of others (ex. true tissues) - Could be considered an outgroup – depends on comparisons
ii. Have cells that look almost identical to single celled choanoflagellate – only determined through DNA sequencing that they are not actually closely related
b. Simple body structure – no symmetry
i. Lack true tissues – no membranous layer separating
ii. Two cell layers - Epidermis (peach) – outer covering
- Choanoderm (blue) – named because they look like choanoflagellate
a. Draws in food particles
b. Passed through amoebocytes
iii. Middle region – water movement is used to stay upright - Porocytes (purple) – allows for movement of water
a. Spongocoel – central water filled area; water moves through - Mesohyl
a. Amoebocytes (cyan) – look like amobaes
b. Hardened spicules (yellow) – provide structure
iv. Pulls water current in and pushes out to stay upright – dye experiment
c. Random growth – cells are totipotent
i. Totipotent – can regenerate and change cells fate - Also found in plants
ii. Broken apart sponge/a single cell – can develop into a new organism - All sponge cells can give rise to any of the other cell types
iii. Can self assemble with other cells into a sponge – separated sponge will spontaneously reassemble - Cnidaria – jellies, anemones, corals
a. Evolution of radial symmetry – likely evolved from cnidaria
i. No right or left side – several planes of symmetry
ii. Only one body axis - Top – oral
a. First development of mouth - Bottom – aboral
a. Anchored to substrate
iii. Diploblastic – first formation of eumetazoan tissues (2 embryonic cell types) - Epidermis
- Gastrodermis
- Mesoglea – non cellular jelly layer
b. 2 body shapes
i. Polyp – crawling animals; anemones and hydras - Cylindrical
- Mouth faces up – acts as mouth and anus
a. Connected to aboral by stalk/body - Aboral side moves animal
ii. Medusa – free swimming jellies - Mouth down – acts as mouth and anus
- Tentacles point down
a. Move water to get food
b. Can also be protective
c. Clades
i. Anthozoa – polyp - Anemones and corals
ii. Medusozoa – medusa - Jellies and hydrozoans
a. There are freshwater jellies – outbreak in Manitoba along Ontario border
b. Hydrozoans – have more calcium and are able to stand up straight - Some have proteins that glow in the dark – scientists use to understand function of genes and proteins associated with animals
- Chordata
a. Bilaterian
i. Deuterostomia – mouth second
b. 4 characteristics
i. Notochord – provides strength & support; usually cartilage - Runs the entire length of organism
ii. Dorsal hollow nerve chord – develops into CNS and spinal cord
iii. Pharyngeal arches – allows movement of water/oxygen/particulates - Pharynx = throat
- Opening – mouth or water through gills
a. Allows movement of water
b. Suspension feeding devices
iv. Post anal tail – can diminish or become reduced during embryonic development - Contains skeletal elements and muscles
c. 3 major clades
i.
ii. Cephalochordates – aquatic - Lancelets – most basal group of living chordates
a. Maintain chordate characteristics throughout lifespan
b. Microbes – burrow into sand
iii. Urochordata – aquatic - Tunicates
a. Chordate characteristics are present only in larvae stage – free swimming
i. Metamorphosis – loses many dorsal hollow nerve cord, post anal tail, notochord
b. Maintain pharyngeal slits as adults – allows movement of water & collects particulate
c. Excurrent siphon – water enters & collects food with cilia
iv. Vertebrata – aquatic & terrestrial - Skeletal and nervous system – increased efficiency at
a. Capturing food
b. Evading predators - Derived characters (not from ancestor)
a. Vertebrae enclosing spinal cord – repeated segmentation
b. Elaborate skull
c. Fin rays (aquatic species) - Evolution
a. Jawless fish – basal species
i. Hagfish - Bottom dwelling scavengers
- Skull made of cartilage
- Retains notochord as adults
- Produces slime as a defense mechanism
ii. Lampreys – freshwater and oceanic - Most are parasites
- Have teeth – clamp round jawless mouth on live fish
- Skeleton made of cartilage
b. Jaws – formed from fused skeletal support of pharyngeal slits
i. Able to capture prey
ii. Evolved in Gnathostoma clade - Sharks
- Ray finned fish
- Lobe finned fish
- Amphibians
- Reptiles & birds
- Mammals
c. Lungs & bone
i. Evolved in Osteichyan clade – aquatic enviro - Ray finned fish (boney fish)
a. Flexible rays modified for maneuvering & defense
b. Trout, salmon, cod - Lobe finned fish (muscle on their fins)
a. Lungfish
b. Tetrapods
d. Limbs
i. Evolved in tetrapods – gnathostomes - Fins of lobe fin – become limbs
- Head is separated by body with neck
- Bones of pelvis are fused to backbone
- Adult tetrapods do not have gills – larvae may be aquatic
ii. Amphibians – tetrapods - Salamanders – some are only aquatic, some are terrestrial
a. Often retain juvenile characteristics as adults
b. Fertilization is external - Frogs – mostly terrestrial
a. Larvae are aquatic – gills
b. Variety of adaptation of avoid predation
e. Amnion
i. Evolved in clade amniota - Reptiles & some mammals
a. Derived character – not ancestral - Amniotic egg with 4 extraembryonic membranes
a. Amnion – shock absorber
b. Chorion – gas exchanger
c. Yolk sac – provides nutrients
d. Allantois – waste storage - Advantage – able to protect young on terrestrial environment; allows eggs to be laid on land; no longer require water
f. Milk & hair
i. Evolved with mammalia - Mothers nourish young with milk
- Hair helps to retain heat
ii. 3 clades - Monotremata – lays eggs
a. Ex. platapus - Marsupials – short gestation; babies are underdeveloped
a. Ex. kangaroo & koala - Eutherials – longer gestation & better development
a. Ex. humans & elephants - Echinodermata – ex. sea stars, sea urchins, sand dollar, sea cucumbers
a. Structures
i. Complete gut – separate mouth and anus (they are close together)
ii. Tube feet – locomotion and sensing
iii. Hydraulic canals – the water vascular system - Water pressure enables movement – thousands of tiny feet suck up water through movement of ampulla (turkey baster)
b. Larvae have bilateral symmetry (doesn’t have to be in adulthood)
c. Most adults have radial symmetry – multiples of 5
i. Pentaradial – central disc & 5 arms - sea stars and sea urchins
ii. Predators – they crawl on sea floor; eat snails, sand dollars
d. Red brittle star – Ophiocoma wendtii
i. Have photoreceptors – light sensing cells; can see without eyes - Evolutionary advantage – can sense light and shadows
ii. Found in Caribbean and Gulf of Mexico
e. Characteristics
i. Sea stars and brittle stars – can regenerate limbs as long as central disc remains intact
ii. Most have hard coverings - Sea urchins – spiny
- Sea cucumbers – soft
a. They still have spines & homologous gene sequencing – still echinoderms
iii. Doesn’t have true cephalization – they only have a central disc - Platyhelminthes – flatworms
a. Part of Lophotrochozoa clade – widest range of animal body forms
i. Classified by a few characteristics - Lophophore – feeding structure
a. Generates current – captures plankton & bacteria - Trochophore – common larval form (not all have)
a. Little cilia allow movement - Bilaterian – coelom (body cavity) and digestive tract have 2 openings (complete gut)
a. Lots of variability – clams, slugs, snails, octopus - Triploblastic
- Often aquatic or live in damp environments
ii. Often develop as protostomes – cleavage is spiral and determinate
iii. Includes – flatworms, rotifers, brachiopods, molluscs, annelids
b. Characteristics
i. Rudimentary cephalization – light sensitive areas
ii. Incomplete gut – evolutionary loss; they have a gastrovascular cavity - Do not have distinct mouth/anus
iii. Marine, freshwater, and terrestrial (damp) - Free living and parasitic
iv. Acoelomate – no body cavity
v. Flat body - Gas exchange occurs through skin
- Easier to hide from predators
vi. Not segmented
c. 3 major groups
i. Turbellarian
ii. Trematoda - Clade neodermata – parasitic trematodes (flukes); can live on or inside hosts
a. Schistosoma – causes swimmers itch
b. Cestodes – tapeworms that live in intestine
i. Loss of gastrovascular cavity over evolution
ii. Can reach 20m in length
iii. Used to be prescribed to lose weight
iii. Cestoda - Brachiopoda
a. Part of lophotrochozoa
i. Has lophophore – used to capture food
ii. No trochophore larvae
b. Attached to sea floor – cilia allows movements & capturing of food
c. Lamp shells
i. 2 halves of the shell are dorsal & ventral instead of lateral – right and left are symmetric - Top and bottom shell are not identical – defining characteristic of brachiopods
ii. 2 muscles – one opens & one closes
d. Clade inarticulate – small or no hinge
i. Ex. lingula
ii. Very large pedicle – helps to anchor them and burrow down into sand
a.
iii. Complete gut – mouth, intestinal tract, anus
a.
e. Clade articulata – large hinge
i. Incomplete gut - No place for waste to escape – come into mouth , processed, leaves through mouth (no anus)
- Intestines protrude out of the back of the shell
- Annelida
a. Part of lophotrochozoa
i. Trochophore larval stage – undergo metamorphosis; little cilia allow movement as larvae
ii. Locophore – mouth structure
b. Segmented worms – allows greater mobility
i. Segmentation – grade of organization (developed independently)
ii. Organs are compartmentalized
c. Live in water & damp soil – they emerge after heavy rain due to a lack of oxygen in the soil
d. Errantia clade – actively mobile, segmented worms
i. Mostly marine
ii. Predators, grazers, scavengers
iii. Appendages - Parapodia and palps – locomotion; antennae whiskers used for sensation
e. Sedentaria clad – less active segmented worms (tubeworms, earthworms, leeches)
i. Marine sediment and soil
ii. May have elaborate gills if living in tubes - Tube worms – extend their gills
iii. Leeches – parasitic; feed off other invertebrates
iv. Earthworms – can extract nutrients from soil - Mollusca
a. Part of lophotrochozoa
b. Common structures
i. Muscular foot – movement, prey capture, digging
ii. Mantle cavity – water filled chamber (aquatic) - Contain gills, anus (posterior), excretory pores
- Secretory structures – often leave slime trails
- Produces the shells – protects organs that form the visceral mass
iii. Radula – functions like a tongue to capture food - Aggressive – can eat away at plants, algae, shells of other orgs
- Anterior end
iv. Visceral mass – houses internal organs (heart, DI tract, stomach) - Pushed inward due to large muscular foot
a.
c. Molluscan clades – 4 major
i. Gastropods – snails & slugs - One piece shell – can hide in
- Radula at head – used to feed off plants & algae & burrow into other orgs shells
- Ex. blue sea dragon – tiny blue shell-less gastropod mollusc
a. Glaucus atlanticus
b. Found in warm environments
c. Feed on venomous animals (ex. hydrozoan Portuguese man o’ war) – integrates poisons & stores stinging nematocysts from cnidarians within its tissues (defense mechanism)
ii. Bivalve – clams, oysters - 2 piece shells – hinged or non
- No distinct head
- Sedentary lives – often attached to substrate
- Suspension feeders
- Eye like structures – can sense environment
iii. Polyplacophora – chitons - Many piece shell – segmentation allows flexibility
- Scrapes algae off rocks
iv. Cephalopoda – squids, octopus, cuttlefish - Highly intelligent – cephalization allows integration of complex info
a. Studied to understand complex behaviour - Camouflage
- Tentacles capture prey
- Nematoda – roundworms
a. Part of clade Ecdysozoa
i. Characterized by tough cuticle or shell – exoskeleton - Requires periodic molting and stepwise growth – doesn’t grow with animal
- Provides protection
- Made of chitin
b. Roundworms – most common animal on earth; can live aquatic or terrestrially
i. Characteristics - Pseudocoelomate body structure – mesoderm does not cover the endoderm
- Body is covered by cuticle – must periodically shed to grow
- Flexible body
- Free living and parasitic – plant and animal hosts
a. Play a large role in agriculture
ii. Ex. Caenorhabditis Elegans – type of roundworm - A model system – used for research (often genetics and biochem)
a. Small size
b. Easy to grow in lab
c. Sequenced genome
d. Simple body form
e. Lots known – lots of peer reviewed material - One of the first species used in turn of the century studies (early 2000s)
- Arthropoda
a. Part of clade Ecdysozoa
i. Characterized by tough cuticle or shell – exoskeleton - Requires periodic molting and stepwise growth – doesn’t grow with animal
- Provides protection
- Made of chitin
b. Very diverse – 2/3 known species are arthropods
i. Members are fond in nearly all habitats in biosphere – lots of evolutionarily beneficial characteristics
c. Body plan
i. Segmented body – derived; assists in motility
ii. Exoskeleton
iii. Jointed appendages – important due to exoskeleton - Evolved in Arthropoda
- Used for
a. Walking – joints on leg
b. Defense – claws for defense and intimidation
c. Fangs – inject venom; appendage of head; can paralyze larger organisms
d. Sensation – antenna used to interrupt surroundings; cephalization
d. General characteristics
i. Segmented – derived
ii. Body is covered in cuticle – proteins & chitin - Must molt to grow
iii. Tagmata – segments grouped together - Head
- Thorax (middle)
- Abdomen
iv. Open circulatory system – hemolymph (instead of blood) is circulated into the spaces surrounding tissues and organs
e. 5 major clades in phylum
i. Hexapoda clade – insects - Evolution of flight – occurred in Hexapoda clade
a. Insect wings – extensions of the exoskeleton & cuticle (brittle)
i. Not appendages
ii. Contributed to evolutionary success – escape predators, food sources, disperse to new habitats quickly - Includes insects & 6 legged kin – huge clade; live in almost every terrestrial and freshwater habitat
a. Insects – always have 3 body parts & 6 legs
i. Usually have 4 wings & 2 antennae - Undergo metamorphosis – 2 types
a. Complete – larvae (maggot/caterpillar) to adults (wings)
i. Pupa – hard covering; protects during transformation
b. Incomplete – younger nymphs resemble adults (true bugs)
i. Emerge from eggs very young - Characteristics
a. Exoskeleton – lightweight & chitinous
b. 3 tagmata – have compartments within
i. Head – 5 segments - Not cephalothorax – occurs mainly in spiders and chelicerates
ii. Thorax – 3 segments
iii. Abdomen – up to 11 segments - Clades within hexapoda
a. Complete metamorphosis – 4 groups winged insects
i. Include beetles, flies, wasps & bees, moths
b. Incomplete metamorphosis – 2 groups winged insects
i. Include leaf hopper, aphids, grasshoppers
ii. True bugs
ii. Remipedians (crustacean) – ex. silverfish - Paraphyletic – does not include all descendants of ancestor (insects); does not include all crustaceans
a. Terrestrial insects are more closely related to crustaceans that myriapods
b. Some crustaceans are more closely related to insects than other crustaceans - Often terrestrial??**
iii. Other crustaceans - Paraphyletic – doesn’t include all crustaceans
- 2 tagmata
a. Cephalothorax
i. Several pairs of antennae
ii. Chelipeds
iii. Walking legs – won’t all have the same number
b. Abdomen/tail – heavily muscled - Types
a. Isopods – pill bugs; like damp and dark
b. Decapods – crabs, lobster, crayfish, shrimp
i. 10 legs (“deca”)
c. Copepods – sea monkeys, sea lice
i. Critical for maintaining aquatic environment
d. Barnacles
i. Usually attached to substrate via pedicle – shallower water
ii. Feet protrude out – bring food in
iii.
iv. Myriapods - Centipedes – poisonous & carnivorous
a. One pair of legs per segment - Millipedes – herbivorous
a. 2 pairs of legs per segment
v. Chelicerates - Eurypterids – horseshoe crabs (used to study physio of animals), sea spiders
- Arachnids – spiders, scorpions, ticks (becoming a big issue), mites
a. 2 tagmata
i. Cephalothorax - Cephalothorax
a. Pedipalp – poisonous
b. Chelicera - ??** - Abdomen – houses organs
a. Posterior abdomen – heart, reproductive structures, digestive system, silk glands
b. 6 pairs of appendages
i. Chelicerae – 1 pair
ii. Pedipalp – 1 pair; poisonous
iii. Walking legs – 4 pairs
c. No antennae – have sensitive eyes
d. Open circulatory system – hemolymph leaves heart in arterioles; no veins to bring blood back to the heart
Evolution of true tissues
- Tissues – groups of specialized cells
a. 2 groups based on presence of membranes
i. Parazoa – cell are not separated by membranes - Sponges – lack tissues and radial symmetry; no true tissues
ii. Eumetazoa – cells are separated by membranes - Eumetazoan tissues
a. Development
i. Egg and sperm come together and form zygote
ii. Two major events early in development - Cleavage
a. Mitotic divisions – asexual reproduction
b. 8 cell stage – continue to divide to blastula
c. Blastula – hollow ball of cells - Gastrulation – invagination and formation of cavity in blastula
a. Forms – primitive gut and blastophore (mouth)
b. Diploblastic – 2 germ layers in embryo
i. Ectoderm – outer layer of embryo
ii. Endoderm – inner layer of embryo - Develops via gastrulation
- Lines digestive tract, liver, lungs
- Triploblastic evolution – 3 germ layers in embryo
a. Mesoderm – forms inner muscles and organs
i. Fills space between ectoderm and endoderm
b. Eg. Flatworms, arthropods, vertebrates
Body cavities
Three grades of organization – occurred multiple times in different phyla to overcome obstacle
- Only in triploblastic animals – 3 germ layers
• The way they’re organized is a defining feature
- (eu)Coelomates – cavity is completely lined with mesoderm; mesoderm lines endo and exoderm
a. Closed circulatory systems
b. Coelom – body cavity
i. Coelomates – an organism that has a true body cavity
c. Ex. Earthworms (annelids), chordates, echinoderms, molluscs, arthropods - Pseudocoelomates – body cavity partially lined by tissue derived from mesoderm
a. Protostomes
b. Partial
i. Ectoderm is in contact with mesoderm
ii. Mesoderm does not line DI tract/endoderm – hence pseudo
c. Ex. Roundworms (nematodes) - Acoelomates – no body cavity; some animals have cavities that are not completely formed
a. No space between tissue layers
b. Ex. Flatworms (platyhelminths)
Evolution of bilateral symmetry
- Derived character – not ancestral; evolved in phyla independently
a. Occurs at some stage in their life – doesn’t have to be adulthood - Structure
a. Dorsal (top) and ventral (bottom) side
b. Right and left side
c. Anterior (front) and posterior (back) - Often exhibit cephalization – sensory systems concentrated in anterior end (head)
a. Cephal – formation of a head
b. Central nervous system formation
i. Clustered neurons – brain and ganglia
ii. Used for – active movement, complex integration and complex behaviour
c. Radially symmetric lack it – networks of individual neurons
i. Often sissile (immobile) or weakly swimming (drifting)
Evolution of complete gut
2 openings
- Derived character – not ancestral; evolved in phyla independently
- Require 3 tissue systems
a. Differs from gastrovascular cavity in cnidarians – single opening; ancestral character - Two possibilities during gastrulation
a. Protostomia clade – blastopore becomes mouth (proto = first; stome = mouth)
i. Anus may form later
ii. Cleavage division – spiral and determinate - Cell fate is established early
- Cell divisions are not at right angles to each other – they spiral
iii. Ex. snails
b. Deuterostomia clade – blastopore becomes the anus (deuteron = second)
i. Mouth forms later
ii. Cleavage division – radial and indeterminate - Cell divisions are at right angles to each other – zygote divides into right and left halves
- Each cell in early stage of embryo (up until embryogenesis) has the capacity to develop into complete embryo – allows maternal twins development and is a source of embryonic stem cells
iii. Ex. chordates, echinoderms
Evolution of segmentation
segmentation – identical repeating body units
Convergent evolution – found multiple times in bilaterians; unrelated or distantly related organisms evolving in similar body forms
• Present in 3/10 major animal phyla – Arthropoda, Annelida, Chordata (invertebrates)
• Derived character
Different genes are responsible for each segment
animal forms are limited by
o Strength – you need proper skeleton to support structure
o Diffusion – there are some that only get gas through diffusion of skin
More complex animals – cannot use diffusion across skin for oxygen supply
o Heat exchange
Birdmans rule – animals further north will have better body sizes that allow for heat retention
o Movement
Ex. swimming – convergent evolution in seals, penguins, tuna
4 adult tissue types
- Epithelial tissue – outer coverings and tube linings
a. Many functions – outer coverings and inner linings (derived from ectoderm & endoderm)
i. Protection – keep substances out; larger scale
ii. Physical barrier – keep substances out; smaller scale (think selective permeability of cells)
iii. Controlling the movement of substances – ex. food absorption in DI tract - Diffusion – passive movement of molecules through membrane
- Facilitated diffusion – passive movement of molecules through a transporter protein
- Active transport – primary or secondary
iv. Secretion - Ex. skin – sweat & oil
- Ex. digestive juices
b. Structure
i. Polarized cells – each may have different types of transport proteins depending on concentration of materials and direction of movement - Apical surface – faces lumen
- Basolateral – attached to the basement membrane
a. Basement membrane – allows cells to be organized on one surface
ii. Specialized connections - Gap junctions – pore channels between cells that allows communication and movement of materials
- Tight – proteins that tightly bind neighbouring cells; prevent movement of materials between cells
iii. Cell types - Simple – one cell layer
- Stratified – multiple layers
- Squamous – disc/scale
a. Good for diffusion – gas can move across - Cuboidal – cells are often specialized for secretion
a. Ex. Common in kidney tubules & bottom layer of epidermis - Columnar – often specialized for secretion and active transport
a. Differs from cuboidal – often in more difficult environments (ex. lots of acids in small intestine)
iv. In animals - Lungs & gills – one layer of simple squamous
a. Gas exchange between environment and blood vessels - Blood vessel – one layer of simple squamous
a. Gas exchange between tissues and in lungs - Gastrointestinal tract – simple columnar
a. Absorption
b. Protection
c. Specialized cells – good for difficult environment
i. There is a layer of mucous in small intestine that protects cells
ii. Cells die more often – small apical surface area makes it easier for cells to take their place (there are more cells in a smaller space) - Less surface area for damage
- Epidermis
a. Multiple layers
i. Basolateral – (simple) cuboidal
ii. Apical – stratified squamous - Constantly shedding – animals need multiple layers
- Flattening reduces bulk of skin
b. Epidermal derivatives – same tissue type as epidermis
i. Scales
ii. Feathers
iii. Fur - Connective tissues – cells surrounded by extracellular matrix
a. Types
i. Loose – most widespread in vertebrates - Binds epithelia to underlying tissues and holds things in place (ex. skin and organs)
- Loose weave of fibres - collagen and elastin fibres
ii. Fibrous – also dense CT - Tendons and ligaments - holding muscles to bones and bones to bones
- More organized - fibres go the same way which provides more strength
- Mostly extracellular matrix
iii. Adipose – specialized loose CT - Provides padding, insulation, storage
- White areas - vacuoles within cells grow and shrink when fat accumulates within cell
iv. Bone – hard CT - Strong mineralized structure
- Concentric layers of mineralized matrix - circularized layers around cells (mineralized)
v. Cartilage – flexible but strong - Some animals have much more cartilage (ex. sharks)
- Chondrocytes - cells
vi. Blood - Extracellular matrix is fluid - plasma
- Erythrocytes - RBC carry oxygen
- Leukocytes - WBC; immune protection
- Platelets - clotting
- Nervous tissue
a. Cell types
i. Neurons - Dendrites – receive incoming info
- Axon – sends signals out to another neuron; output
- Blood vessels – provides nutrients to neurons
ii. Glia – supporting cells; nourish, replenish, insulate, myelinate - Muscle tissues – actin and myosin enable contraction
a. Skeletal
i. Striated – organized sarcomeres
ii. Formed by fusion of cells – multinucleated
b. Cardiac
i. Separated by intercalated discs – connect muscle fibres together & assists in synchronized contractions
ii. Striated – organized sarcomeres
iii. Involuntary – in all animals
c. Smooth
i. No striations
ii. Involuntary in vertebrates
iii. Voluntary in invertebrates
Regulators vs conformers
- thermo
- source of heat
- maintaining body temp
- conserving heat
- osmoregulation
- homeostasis
a. Regulation – staying the same; higher energy cost
i. Allows optimal function of proteins and enzymes
ii. Required energy from metabolism
b. Conformation – changes with external environment
i. Required less energy
ii. Proteins may function slightly less – but metabolism is lower functioning so not as many enzymes are required (catch 22 on which one is “better”)
Homeostasis – maintaining a steady state internal environment different from external; active disequilibrium
- Thermoregulation – not always the most clear since different parts of the body can have different temps
a. Homeothermy – constant temp
b. Heterothermy – variable temp - Source of heat – often used
a. Endotherm – heats from inside source through metabolism and catabolic reactions
i. Reactions are purposefully inefficient – heat lost is used
ii. Cooling off – may seek cooler environment (still relies on environmental temp in some ways)
iii. “warm blooded”
b. Ectotherm – heat from outside source; changes with environment
i. “cold blooded” - Maintaining body temp – thermostat mechanism
a. Hypothalamus - senses body temp & deviations outside of set point
i. If too warm – makes adjustments to cool body - Increase in blood vessel dilation in skin – allows heat to be released to environment
- Sweat glands secrete sweat - evaporates cools the body
ii. If too cold - Blood vessel constriction - brings more blood to core to reduce heat loss (less in skin = less that can be lost)
- Shivering - rapid contraction of skeletal muscle; produces heat
- Conservation of heat
a. Insulation – fur, feathers, & blubber add a layer of heat retention
i. All types of insulation change seasonally - Fur gets thicker
- Feathers – down fur
- Blubber – changes for many reasons; more is required in winter
ii. Marine mammals - only have blubber (better in water)
iii. If both on land and sea - blubber and fur - Fur - better on land; traps air and warm air
b. Heat exchangers
i. Ex. Canada geese standing in cold water - Mechanisms in feet that allow heat exchange – countercurrent heat exchange
a. Ret mirable - wonderful net
b. Net of blood vessels – cold blood passes by warm and allows heat exchange
i. Warm blood enters leg in artery - passes heat to blood exiting leg in veins
ii. Cold blood stays in feet - doesn’t cool the core temp of blood
ii. Ex. Killer wales - have in dorsal fin (little blubber here) - Osmoregulation – movement of water to control salt balance
a. Tonicity – non penetrating solutes
i. Requires regulation by water movement – can’t move solutes; only water moves
b. Will differ based on environment
i. Freshwater fish – body fluids are hyperosmotic - Take in a lot of water through gills, skin, gut
- Excretes a lot of water in urine/kidney (lots), gills, skin – prevents cell lysis in hypotonic environment
ii. Marine/salt water – a lot are osmoconformers; body fluids are hypoosmotic - Take in a lot of salts with water through gills, skin, gut
- Excretes a lot of salts through kidney, gills (lots), skin – prevents dehydration of cells
iii. Anadromous – can live in marine or freshwater habitats - Ex. salmon – thermoconformers; require osmoregulation depending on environment
Nutrition requirements
Cellular work – all cells require ATP produces via cellular respiration; need: - Supply of reactants o Glucose o Oxygen - Waste removal system o Nitrogenous waste o Co2 o H2o – is a “waste” but doesn’t need to be removed because its used in other parts of the body - Mechanism to connect these
Nutrition
- Ingestive heterotrophy – animal eats other organisms to gain energy (can’t produce its own)
o Carbon compounds – ATP synthesis (especially Krebs); macromolecule synthesis
o Essential nutrients – essential AA (can’t be made by body); some fatty acids
o Vitamins & minerals – micronutrients (are only required in small amounts); often play a role in enzyme function
- Deficiencies – can be in everything; there are many symptoms depending on what’s missing
o Ex. lack of glucose – body was breakdown fats, then proteins (using proteins can be harmful)
Food processing
- Ingestion
a. Mechanical digestion – chewing
i. Not all animals have – often the first step if they do - Ex. starfish & spiders – secrete digestive enzymes onto prey before ingestion
b. Types
i. Suspension feeding – filter feeding - ex, anemone and baleen whale
ii. Substrate feeding – animals live on their food source - Ex. caterpillar
iii. Fluid feeding – very common - Ex. mosquito, aphid
iv. Bulk feeding – ingesting large chunks of food; 2 types - Ingesting whole prey
a. Soft bodied – need to be able to expand
b. Modified jaws
c. Ex. snakes – able to unhinge & separate their jaws - Ingesting prey in pieces
a. Modified teeth – to rip apart and chew prey
b. Derived characteristic – present in more highly evolved animals; adaptations evolved (ex. teeth, claws, etc)
i. Smaller is easier to digest – breakdown occurs more quickly and requires less energy; increased nutrient consolidation
ii. Saliva can access more surface area - Digestion
a. Mechanical digestion – also occurs as churning in stomach (muscle contractions)
b. Chemical digestion – stomach, small intestine
i. Enzymatic hydrolysis
c. Digestive chambers
i. Gastrovascular cavity – present in more basal animals - Organs for digestion and circulation – only one internal cavity
- Only one opening for food and waste – food digests and circulates
ii. Alimentary canal - Digestive tube with 2 opening – complete gut; only travels in one direction
- Components
a. Mouth – mechanical digestion
b. Salivary glands – digestive enzymes for carbs
c. Esophagus – food travels to stomach
d. Stomach – mechanical & chemical digestion
e. Small intestine – chemical digestion & absorption
f. Cecum – fermentation of materials
g. Large intestine – some absorption; mostly reabsorbing water out of digestive material
h. Anus – excretion
i. Pancreas – digestive enzymes
j. Liver – filters blood within food to remove toxins
k. Gallbladder – produces bile for fat breakdown
d. Enzymatic digestion – occurs in one of two places
i. Intracellular – within the cell - Enzymes – within cells (no acid?)
- Sponges – occurs within choanocytes (collar cells)
a. Cell engulfs via phagocytosis – all food is digested this way - Other animals – use for digestion of tripeptides (3 AA proteins)
a. Not very common
ii. Extracellular – enables eating larger pieces of food - Acid and enzymes – within chambers (ex. stomach and sm intestine)
- Almost everything but sponges
e. Start of digestion – all use pancreatic enzymes in small intestine
i. Carbs – begins in oral cavity (salivary amylase)
ii. Proteins – begins in stomach (pepsin)
iii. Fats – beings in small intestine - Absorption
a. Mostly in small intestine – nutrient molecules enter the body cells
i. Small finger like projections – microvilli
ii. Villi – increase SA to increase rate of nutrient absorption and digestion
b. Typhlosole – longitudinal fold projecting into the intestinal cavity
i. Present in less derived species (more basal)
ii. Lengthwise folding increases SA – not as effective or sophisticated as the villi and microvilli - Elimination
Feeding and dentition
- Mammalian teeth – animals that each chunks will have; there is a lot of variation
a. Incisors – front
b. Canines – lateral to incisors
c. Premolars – anterior to molars
d. Molars – posterior; large SA for grinding - Herbivore (ex. sheep)
a. Cutting incisors – able to cut grass and leaves
b. Canines – modified for slicing; similar to incisors
i. Can be absent
ii. Can be very large – can be for sexual selection as well
c. Pre molars – grinding materials
d. Grinding and pulverizing molars - Omnivore (ex. brown bear)
a. Ex. humans
i. Incisors – breaking off
ii. Canines – were larger in fossil humans; ours are very reduced now
iii. Premolars – pointer than molars; good for sheering
iv. Molars – grinding; mechanical digestion for plant matter - Carnivore (ex. polar bear)
a. Incisors – they’re present but not as useful
b. Canines – capturing and killing
c. Premolars – shearing; fit together well in a way that slides past each other when they chew which helps tear flesh
d. Molars – similar to premolars; less serrated due to lack of space