Molecular Evolution Flashcards

(33 cards)

1
Q

What is genetic drift

A

Genetic drift is the random change in allele frequencies in a finite population due to chance.

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2
Q

Why is genetic drift stronger in small populations

A

Because random events have a larger impact when fewer individuals are present

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3
Q

What are the two possible outcomes of an allele in a finite population

A

Fixation or extinction

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4
Q

What is the probability of fixation of a new neutral mutation

A

1 / 2N, where N is the population size

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5
Q

How long does it take for neutral mutations to fix

A

On average, 4N generations

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6
Q

What happens to most new mutations in a drift only scenario

A

They are lost due to chance

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7
Q

Why does genetic drift contribute to molecular evolution

A

Because even neutral mutations can fix over time by chance

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8
Q

What is positive selection

A

Selection for beneficial alleles, increasing their frequency

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9
Q

What is purifying (negative) selection

A

Selection against deleterious alleles, decreasing their frequency

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10
Q

How does selection impact genetic diversity

A

It reduces diversity by favoring or removing alleles

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11
Q

What causes mutations

A

Errors in DNA replication

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12
Q

Name three types of mutations

A

Base substitutions, insertions/deletions, large chromosomal changes

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13
Q

What determines the likelihood a mutation fixes in a population

A

Its initial frequency and whether it is neutral, beneficial, or deleterious

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14
Q

How does a one way mutation (e.g. yellow to green) behave over time

A

The green allele accumulates as yellow mutates and green never reverses

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15
Q

How did electrophoresis change our understanding of variation

A

It revealed much higher genetic diversity (allozyme variation) than expected

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16
Q

What is clock-like divergence

A

Steady accumulation of protein differences between species over time

17
Q

Why does clock-like divergence challenge selection theory

A

Too much consistency and diversity for selection alone to explain

18
Q

What is the Neutral Theory of Molecular Evolution

A

Most molecular changes are due to neutral mutations fixed by drift

19
Q

What drives molecular evolution under neutral theory

A

Random genetic drift of neutral mutations

20
Q

How does neutral theory explain molecular clock observations

A

Fixation rate = mutation rate (u), leading to constant divergence

21
Q

What does the neutral theory say about selection

A

Selection mainly removes deleterious alleles; beneficial ones are rare

22
Q

What do selectionists believe

A

That fixed differences often reflect adaptive, positively selected changes

23
Q

What do neutralists believe

A

That most polymorphisms and fixed differences are neutral and drift-driven

24
Q

What is a synonymous mutation

A

A DNA change that does not alter the amino acid - usually neutral

25
What is a non - synonymous mutation
A mutation that changes the amino acid - may be neutral, harmful, or beneficial
26
What is the dN/dS ratio used for
To detect selection by comparing rates of synonymous vs. non-synonymous changes
27
Interpret dN/dS >1, <1, =1
> 1 = positive selection; < 1 = purifying selection; = 1 = neutral evolution.
28
What limits dN/dS analysis
It only detects repeated or strong positive selection across lineages
29
What is a selective sweep
A rapid rise and fixation of a beneficial mutation, reducing nearby diversity
30
Why is parallel evolution evidence for positive selection
Because the same mutation appearing independently is unlikely by drift alone
31
What did the E.coli long term evolution experiment show
Repeated, parallel adaptations across separate populations - evidence of selection
32
What is neofunctionalism
After gene duplication, one copy mutates into a new function while the other retains the original
33
How do bacteria acquire new genes
Through Horizontal Gene Transfer (HGT) using plasmids - enables transfer of entire operons and resistance genes