Nucleic Acid Structure, Properties and Function Flashcards

(46 cards)

1
Q

What are the two main types of nucleic acids?

A

DNA and RNA

DNA stands for Deoxyribonucleic acid, and RNA stands for Ribonucleic acid.

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2
Q

What is the basic structure of a nucleotide?

A

Nitrogenous base, sugar, phosphate group

A nucleotide consists of a sugar, a nitrogenous base, and a phosphate group.

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3
Q

What sugar is found in DNA?

A

2-deoxyribose

DNA contains the sugar 2-deoxyribose.

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4
Q

What sugar is found in RNA?

A

Ribose

RNA contains the sugar ribose.

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5
Q

Name the pyrimidine nitrogenous bases.

A

Cytosine, Thymine (DNA), Uracil (RNA)

Pyrimidines are characterized by their single-ring structure.

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6
Q

Name the purine nitrogenous bases.

A

Adenine, Guanine

Purines consist of a two-ring structure.

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7
Q

What forms the backbone of nucleic acids?

A

Sugar-phosphate backbone

The sugar-phosphate backbone is formed by alternating sugar and phosphate groups.

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8
Q

What type of bond joins nucleotides in a DNA sequence?

A

Phosphodiester bonds

These bonds link the phosphate group of one nucleotide to the hydroxyl group of another.

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9
Q

What is the primary structure of nucleic acids?

A

Sequence of nucleotides

The primary structure refers to the linear sequence of nucleotides in a nucleic acid.

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10
Q

What is the secondary structure of DNA?

A

Double helix

The secondary structure refers to the coiling of the DNA into a double helix.

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11
Q

What is the directionality of nucleic acids indicated by?

A

5’ and 3’ ends

The 5’ end has a phosphate group, while the 3’ end has a hydroxyl group.

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12
Q

What are the base pairs in DNA?

A

Adenine-Thymine (A-T), Guanine-Cytosine (G-C)

These pairs are held together by hydrogen bonds, with A-T having 2 bonds and G-C having 3 bonds.

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13
Q

True or False: DNA is single-stranded.

A

False

DNA is typically double-stranded, forming a double helix.

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14
Q

What is the tertiary structure of eukaryotic DNA?

A

Chromosomes

Eukaryotic DNA is organized into long, thin chromosomes.

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15
Q

What is the role of ribosomal RNA (rRNA)?

A

Forms the core of ribosomes and catalyzes peptide bond formation

rRNA is essential for protein synthesis.

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16
Q

What is the function of transfer RNA (tRNA)?

A

Brings amino acids to the ribosome during protein synthesis

Each tRNA molecule is specific to one amino acid.

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17
Q

What is messenger RNA (mRNA)?

A

Carries genetic information from DNA to the ribosome

mRNA is a copy of the gene’s information necessary for protein synthesis.

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18
Q

What happens during denaturation of nucleic acids?

A

Loss of secondary structure and separation of strands

Denaturation can be caused by heat, pH changes, or chemical agents.

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19
Q

What is the average distance between bases in a DNA double helix?

A

0.34 nm

This distance contributes to the stability of the DNA structure.

20
Q

What type of RNA was originally called soluble RNA?

A

Transfer RNA (tRNA)

The function of tRNA was not known when it was first named.

21
Q

What is the function of peptidyl transferase?

A

Catalyzes the formation of peptide bonds

Peptidyl transferase is a ribozyme, meaning it is an RNA molecule that acts as an enzyme.

22
Q

What is a polynucleotide?

A

A biopolymer consisting of more than 13 monomers

Polynucleotides are important in biochemical experiments such as PCR.

23
Q

What is hypochromicity in relation to nucleic acids?

A

Decreased absorption of UV light due to base stacking

Double-stranded nucleic acids exhibit hypochromicity compared to single-stranded forms.

24
Q

What is the typical size of ribosomal RNA (rRNA) in a cell?

A

80% of all RNA in a cell

rRNA plays a crucial role in the structure and function of ribosomes.

25
What are the three main types of RNA?
Ribosomal RNA (rRNA), Transfer RNA (tRNA), Messenger RNA (mRNA) ## Footnote Each type of RNA has a distinct role in protein synthesis and gene expression.
26
At what wavelength do DNA and RNA absorb light?
260 nm
27
What causes the absorbance of DNA and RNA at 260 nm?
The bases
28
How does base stacking affect absorption at 260 nm?
Base stacking decreases absorption
29
Which absorbs more light: single-stranded DNA or double-stranded DNA?
Single-stranded DNA
30
Which absorbs more light: nucleotides or polynucleotides?
Nucleotides
31
What is the term for the phenomenon where double-stranded DNA and RNA absorb less UV light?
Hypochromicity
32
What is the term for the phenomenon where single-stranded DNA or RNA absorb more light than double-stranded DNA?
Hyperchromicity
33
What is the formula to estimate the concentration and purity of DNA/RNA?
A260 / A280
34
What A260/A280 ratio indicates pure DNA?
1.8
35
What A260/A280 ratio indicates the presence of RNA?
>1.8
36
What A260/A280 ratio indicates the presence of protein?
<1.8
37
What happens to DNA when it is heated?
Denaturation occurs
38
What is produced when DNA denatures?
Single-stranded DNA
39
What is the effect of denaturation on absorbance at 260 nm?
Absorbance increases
40
What is a hyperchromic shift?
Increase in absorbance at 260 nm due to denaturation
41
What factors influence the melting temperature of DNA?
Proportion of G+C
42
Which base pairs more strongly: G-C or A-T?
G-C
43
What happens to denatured DNA when the temperature is decreased slowly?
Complete renaturation occurs
44
What happens to denatured DNA with rapid temperature decrease?
Partial re-annealing occurs with mismatches
45
What is the process of creating new DNA fragments identical to target DNA called?
Renaturation
46
Fill in the blank: The template for renaturation is ________.
double stranded DNA