Nucleic Acids/DNA and RNA/Other Things Flashcards
(174 cards)
- Which of the following best describes electrophoretic gels used for DNA?
a. Most separations are done horizontally, while sequencing gels are typically run vertically.
b. Most separations are done vertically, while sequencing gels are typically run horizontally.
c. Most electrophoretic gels are run horizontally, whether for separation or sequencing.
d. Most electrophoretic gels are run vertically, whether for separation or sequencing.
a. Most separations are done horizontally, while sequencing gels are typically run vertically.
- Migration of DNA during electrophoresis is based
a. mostly on the size of the molecule, since the ratio of charge to mass is approximately the same, no matter how large the DNA is.
b. mostly on the charge of the molecule, since the ratio of charge to mass is approximately the same, no matter how large the DNA is.
c. mostly on the charge-to-mass ratio since this can vary greatly among pieces of DNA.
d. on parameters not understood well.
a. mostly on the size of the molecule, since the ratio of charge to mass is approximately the same, no matter how large the DNA is.
- The application of gel electrophoresis (PAGE) in DNA sequencing
a. is nonexistent because DNA fragments differ widely in charge.
b. depends on separation of similar charge/mass ratio on the basis of size.
c. depends on separation of identical size on the basis of charge/mass ratio.
d. is nonexistent because DNA fragments have no net charge.
b. depends on separation of similar charge/mass ratio on the basis of size.
- Which of the following parameters affects the distance DNA molecules migrate during electrophoresis, at pH = 8?
a. The mass of the DNA
b. The total ionic charge on the DNA molecule
c. The fact that each nucleotide contributes one negative charge at this pH.
d. The concentration of agarose or polyacrylamide in the gel.
e. All of these features control the distance the DNA migrates.
e.
All of these features control the distance the DNA migrates.
- Fluorescence works because the fluorescent molecule
a. absorbs light at one wavelength and emits light at a longer wavelength.
b. absorbs light at one wavelength and emits light at a shorter wavelength.
c. absorbs light at one wavelength and emits light at the same wavelength.
d. absorbs light at many wavelengths and emits light at many wavelengths.
a.
absorbs light at one wavelength and emits light at a longer wavelength.
- When fluorescence detection methods are used in biotechnology they
a. have limitations due to low sensitivity
b. can be used for only one substance at a time
c. are not used in DNA sequencing
d. do not present the hazards associated with radioactivity
d.
do not present the hazards associated with radioactivity
- A highly useful method for determining the presence of hydrolyzed fragments of DNA separated by electrophoresis is
a. autoradiography.
b. x-ray crystallography.
c. analytical ultracentrifugation.
d. all of the above
a.
autoradiography.
- Fluorescent techniques can detect concentrations as low as
a. molar (101 M).
b. micromolar (10−6 M).
c. picomolar (10−12 M).
d. attamolar (10−18 M).
c.
picomolar (10−12 M).
- Which of the following are methods used to determine where the DNA bands are located on an electrophoresis gel?
a. Radioactivity
b. Fluorescence
c. Dyes which bind to DNA
d. Luminescence
e. All of these can visualize the DNA
e.
All of these can visualize the DNA
- Fluorescence and other luminescent methods of visualizing bands offer these advantages over methods dependent on radioactivity.
a. They can detect smaller amounts of material (they are more sensitive).
b. Fluorescent molecules like ethidium bromide offer no health hazard, while radioisotopes do.
c. Special licenses are required to work with radioisotopes.
d. These methods are both more sensitive and require no special license.
e. All of these are advantages.
d.
These methods are both more sensitive and require no special license.
- SyBr green and SyBr gold were developed because
a. ethidium bromide is not sensitive enough for modern research
b. they allow faster electrophoretic separations of DNA
c. they fluoresce with RNA as well as DNA, while ethidium bromide does not
d. ethidium bromide is carcinogenic
d.
ethidium bromide is carcinogenic
- Restriction enzymes are especially useful for genetic recombination work for all of the following reasons, except:
a. They cut DNA in the middle of specific sequences.
b. They cut DNA independent of the source of the DNA.
c. They often generate single stranded tails or “sticky ends”.
d. There are a large variety of them commercially available.
e. All of these traits make restriction enzymes useful.
e.
All of these traits make restriction enzymes useful.
- The “natural” function of restriction endonucleases is to
a.
protect bacterial cells from invasion by viruses (bacteriophages).
b.
help bacteriophages infect cells.
c.
regulate gene expression from specific promoters.
d.
remove chromatin from histones.
a.
protect bacterial cells from invasion by viruses (bacteriophages).
- Which of the following statements concerning restriction endonucleases is true?
a.
They attack RNA, not DNA.
b.
They can produce “sticky ends”.
c.
They attack single-stranded sequences only.
d.
They do not display sequence specificity in their site of attack.
b.
They can produce “sticky ends”.
- A palindrome is
a.
a DNA sequence that contains only one kind of base
b.
a DNA sequence that contains only two kinds of bases
c.
a sequence that reads the same from left to right or from right to left
d.
none of the above
c.
a sequence that reads the same from left to right or from right to left
- An isoschizomer is a(n)
a.
a DNA sequence that is identical to one in a different organsim
b.
a DNA sequence from a virus that mimics a sequence in bacteria
c.
enzyme that cuts DNA from the 3’ end
d.
a restriction enzyme that has the same sequence specificity as another restriction enzyme from a different organism
e.
none of these is correct
d.
a restriction enzyme that has the same sequence specificity as another restriction enzyme from a different organism
- A single clone of interest can be distinguished from others in a mixture of clones by
a.
testing the clones for antibiotic resistance.
b.
mobility of the clones in gel electrophoresis.
c.
a specific probe, usually a labeled complementary DNA.
d.
resistance to damage by ultraviolet light.
c.
a specific probe, usually a labeled complementary DNA.
- Enzymes that seal nicks in DNA are called
a.
restriction enzymes.
b.
bacteriophages.
c.
ligases.
d.
exonucleases.
c.
ligases.
- A plasmid is
a.
a virus that infects bacteria.
b.
a piece of DNA derived from two or more sources.
c.
a small circular DNA that is not part of a bacterial chromosome.
d.
an artificially created cytoplasm.
c.
a small circular DNA that is not part of a bacterial chromosome.
- The following steps are all involved in genetic recombination:
1.
Screening for cells that contain the recombined gene.
2.
Cutting the vector with restriction enzyme.
3.
Mixing the gene of interest with the vector.
4.
Isolating the gene of interest from its original source.
5.
Ligating the gene of interest and the vector together.
The following sequence of these five steps would be typical:
a.
1 → 2 → 3 → 4 → 5
b.
2 → 3 → 5 → 1 → 4
c.
5 → 4 → 3 → 2 → 1
d.
4 → 2 → 3 → 5 → 1
e.
2 → 3 → 5 → 4 → 1
d.
4 → 2 → 3 → 5 → 1
- Which of the following are methods by which bacteria can be induced to take up recombinant DNA molecules?
a.
Heat shock.
b.
DNA “guns” which spray the DNA at very high speeds.
c.
Electroporation
d.
Phage or virus infection.
e.
All of these are used to transform bacteria.
e.
All of these are used to transform bacteria.
- Multi-cloning sites (“poly-linkers”) in most commercially available plasmids offer all the following advantages over the earlier plasmids used in genetic recombination except:
a.
They can be used with a wide variety of restriction enzymes.
b.
They assure that only the desired DNA will be inserted into the plasmid.
c.
They enable easy control of the direction of insertion of the gene of interest.
d.
They are usually adjacent to any necessary promoters for gene expression.
e.
All of these are advantages.
b.
They assure that only the desired DNA will be inserted into the plasmid.
- In recombinant DNA technology
a.
vectors are used as carriers for recombinant genes.
b.
it is possible to insert eukaryotic genes into prokaryotic DNA.
c.
foreign DNA is frequently inserted into a bacterial plasmid.
d.
all of these
d.
all of these
- The presence of bacterial or viral clones is detected experimentally by
a.
the presence of colonies or plaques on a suitably prepared Petri dish.
b.
gel electrophoresis.
c.
analytical ultracentrifugation.
d.
x-ray crystallography.
a.
the presence of colonies or plaques on a suitably prepared Petri dish.