pharmacokinetics - acid-base + solubility Flashcards

(45 cards)

1
Q

pharmacokinetics definition

A

study of the movement of the drug within the biological system, AMDET
- what body does to trub

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2
Q

what does AMDET stand for?

A

adsorption, metabolism, distribution, excretion, toxicity

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3
Q

give 5 factors that influence drug solubility

A

ionisation
molecular structure
molecular weight
electronic structure
stereochemistry

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4
Q

adsorption definition

A

how drug gets into the body

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5
Q

distribution definition

A

where drug travels in the body

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6
Q

metabolism definition

A

how drug is treated in the body

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7
Q

excretion definition

A

how drug is removed from the body

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8
Q

why is it important for drugs to have a good water solubility?

A

drugs need to be dissolved in the body in order to travel to the target

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9
Q

what is the pH of the body?

A

pH ~ 7.4

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10
Q

what are the 4 ways a drug can pass through the cell membrane?

A

through tight junctions between cells
through lipid bilayer
via carrier proteins
endocytosis - engulfed by cell membrane, forming vesicle

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11
Q

why is it important for drugs to have good lipid solubility?

A

cell membranes are comprised of lipid bilayers, non ionised drugs move more easily across membranes

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12
Q

how does ionisation affect water and lipid solubility?

A

increased ionisation increases water solubility, and decreases lipid solubility

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13
Q

what is pKa and how does it relate to solubility of a drug?

A

pKa = acid dissociation constant, related to the ease at which a proton is lost/gained (ionisation) which impacts solubility in aqueous/organic environments

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14
Q

what kinds of groups affect a molecules pKa?

A

acidic functional groups that give up a proton to become -vely charged decrease pKa
basic functional groups that can gain protons becoming +Vely charged increase pKa

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15
Q

how do carboxylic acids affect pKa?

A

high electronegativity near the carboxylic acid group decreases pKa / increases acidity
this is because of the -ve inductive effect which weakens the O-H bond and stabilises conjugate base COO-

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16
Q

how do aromatic carboxylic acids affect pKa

A

like normal carboxylic acids, high electronegativity near carboxylic acid group decreases pKa / increases acidity
additional effects depend on substituents:
EWGs destabilise O-H bond, stabilising conjugate base
EDGs stabilise O-H bond, destabilising conjugate base

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17
Q

how do alcohols affect pKa?

A

high electronegativity near alcohol group decreases pKa / increases acidity
+ve inductive effects strengthen O-H bond, destabilising conjugate base
-ve inductive effects weaken O-H bond, stabilising conjugate base

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18
Q

how do aromatic alcohols affect pKa?

A

like normal alcohols, high electronegativity near alcohol group decreases pKa / increases acidity
additional effects depend on substituents:
EWGs destabilise O-H bond, stabilising conjugate base
EDGs stabilise O-H bond, destabilising conjugate base

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19
Q

what does pKah describe about a molecule?

A

specifically the ease at which substances gain a proton to form a +ve ion, acting as a base
higher pKah means stronger base/weaker conjugate acid/equilibrium on RHS
lower pKah means weaker base/stronger conjugate acid/equilibrium on LHS
- equilibrium refers to B + H+ -> BH+ reaction

20
Q

how do adjacent groups affect basicity of a nitrogenous base?

A

groups with high electronegativity (therefore very electron withdrawing) make N lone pairs less basic as they are pulled away, this means the conjugate acid is more likely to give up its proton
pKah decreases, acidity increases

21
Q

how does the basicity of an aromatic nitrogen base compare to a non-aromatic nitrogen base?

A

in an aromatic nitrogen base, the N lone pair is tied up with delocalisation to the aromatic ring, meaning it is less able to bond with H, conjugate acid is more likely to give up its proton
pKah decreases, acidity increases
- this is the case for most bases that display resonance, as this shows electron pair movement around the molecule

22
Q

how do single/double/triple bonds (degree of unsaturation) affect basicity?

A

this affects hybridisation - the lone pair is more localised with sp3 hybridisation, then sp2, then sp, greater localisation of lone pairs increases basicity

23
Q

what are the most common 3 types of nitrogenous bases?

A

amine - most basic at physiological pH
imines - slightly less basic
enamines - proton gain is disfavoured due to resonance, as N is sp2 hybridised

24
Q

compare the basicity of pyridine and pyrrole

A

pyridine = 6 membered aromatic ring with one N, pKah ~ 5
pyrrole = 5 membered aromatic ring with one NH, pKah ~ 4
pyridine is more basic, as its lone pair is orthogonal to delocalised electron cloud so its more able to interact with protons, whereas in pyrrole, the N has to delocalise its lone pair into the electron cloud to be aromatic (this = heteroaromaticity) meaning lone pair is unavailable to interact with protons, without breaking stable aromatic ring
- all heterocycles can be characterised as ‘pyridine-like’ or ‘pyrrole-like’

25
how does basicity of the heterocyle compare with N, O or S is part of the ring?
N heterocycles are more basic than O O is slightly more basic than S but they are quite similar
26
lipophilicity definition
fat/lipid loving, aka hydrophobic
27
why is a balance between good water and lipid solubility important for a drug?
the body is made up of both fatty/non-polar environments and aqueous environments, drugs need to be able to pass between these areas to reach their site of action - too hydrophilic and the drug will pass right through + be excreted - too lipophilic and the drug will be too strongly absorbed + stored
28
blood brain barrier function + structure
a crucial immunological feature of the CNS, provides strucural + functional/chemical barrier to stop contamination of the brain capillaries supplying brain are lined with tight fitting cells without pores located in a fatty layer = thick, non-porous, highly lipophilic / hydrophobic barrier - this blocks most large units e.g. microorganisms, only very fatty molecules can get through
29
outline how the blood brain barrier makes it difficult to deliver drugs to the brain
the blood brain barrier is a tightly controlled environment because the brain is so important its made up of endothelial cells with very tight junctions, which prevent drugs/unwanted chemicals from squeezing between cells, anything entering must dissolve through the fat + cell membranes to diffuse across to the brain, only very fatty molecules can get through
30
how is lipophilicity quantified?
the relative distribution of the neutral drug is tested in an octanol/water mixture to determine P, often expressed as logP P = [octanol]/[water], logP = log10(P) - therefore high logP = more lipophilic molecule (+ vice versa)
31
why is being able to quantify lipophilicity helpful
used to compare the partitioning of a compound between aqueous phase and cell membrane - drugs with logP > 3 are better are passing through lipid bilayer
32
how is the lipophilicity of specific functional groups quantified?
using partition coefficient, πx, relative to H atoms: πx = logP(x) - logP(H) +ve π means group is more lipophilic than H -ve π means group is less lipophilic than H
33
does aromaticity affect π?
yes, π for aromatic substituents are different to π for aliphatic substituents
34
can logP be used for ionisaed specied?
no, it is defined only for neutral species
35
what is the purpose of logD?
this is the effective partitioning coefficient at a specific pH, essentially logP for ionised species, distribution coefficient = D D = [non-ionised]org/([non-ionised]aq + [ionised]aq) logD = log10(D)
36
how is D or logD measured?
a compound is dissolved into a solution and buffered to a specific pH, solution is then added to octanol to measure effective partitioning
37
how is logD useful for drug development?
logD can be found at pH 7.4 to give an indication of lipophilicity at the pH of blood plasma
38
how does logP relate to logD?
for acids: logD(pH) = logP - log(1+10^(pH-pKa) for bases: logD(pH) = logP - log(1+10^(pKa-pH)
39
bioavailability definition
the fraction or % of a drug that reaches systemic circulation - influenced by solubility, permeability, clearance
40
how are logP/logD useful for describing bioavailability
logP/logD describe lipophilicity, which influences solubility, permeability and clearance
41
what is lipinski's rule of 5?
'rule of 5: molecule should have no more than 5 hydrogen bond donors, no more than 10 hydrogen bond acceptors, molecular mass under 500 daltons and a log P lower than 5' - if a molecule follows this it means it has good bioavailability/ is orally available
42
what are verber rules on oral bioavailability?
must have a polar surface area (PSA) of less than 140Å^2 and less than 10 rotatable bonds
43
polar surface area definition
the sum of the areas of the surfaces of polar atoms within a molecule, reported in Å^2
44
how does PSA relate to absorption?
PS correlates with intestinal absorption, membrane permeability and blood-brain barrier penetration - lower PSA = better permeability
45
what is LLE + what does it tell us about a drug?
LLE = ligand-lipophilicity efficiency it links potency with lipophilicity - for orally available drugs, logP between 2-3 is often a compromise between permeability and first pass clearance, LLE>6 corresponds to high quality compounds