Protein trafficking 1 Flashcards

(40 cards)

1
Q

What must cells control to function effectively?

A

Localization of proteins.

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2
Q

Where are digestive enzymes and insulin secreted in the pancreas?

A

Enzymes into the pancreatic duct; insulin into the bloodstream.

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3
Q

Where must insulin receptors be located?

A

In the plasma membrane.

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4
Q

Where does most protein synthesis occur?

A

In the cytoplasm.

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5
Q

What determines where a protein ends up in the cell?

A

Organelle-specific targeting signals.

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6
Q

What are microsomes?

A

ER-derived membrane spheres without ribosomes.

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7
Q

What do microsome studies show?

A

That translation and ER import must occur simultaneously.

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8
Q

What is the function of the signal peptide?

A

Directs the protein to the ER via the SRP.

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9
Q

What is the SRP?

A

A complex of six proteins and one non-coding RNA.

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10
Q

What does the SRP54 subunit do?

A

Binds the signal peptide and ribosome subunits.

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11
Q

What is the role of the translocon?

A

Moves the growing peptide into the ER lumen.

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12
Q

What proteins make up the translocon?

A

Sec61α, β, and γ.

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13
Q

What happens to the signal peptide in the ER?

A

It is cleaved by signal peptidase.

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14
Q

When does protein folding begin?

A

Once the protein is in the ER lumen.

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15
Q

What characterizes type I membrane proteins?

A

N-terminus in the lumen, presence of a signal peptide.

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16
Q

What halts translocation in type I proteins?

A

A stop-transfer anchor sequence in the TM domain.

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17
Q

What is meant by membrane protein topology?

A

Number of TM domains and orientation of N- and C-termini.

18
Q

What is unique about type II membrane proteins?

A

Internal signal anchor, C-terminus in the lumen.

19
Q

What distinguishes type IV TM proteins?

A

Multiple TM domains with alternating orientation.

20
Q

How are tail-anchored proteins inserted into membranes?

A

Via Get3 and the Get1/Get2 receptors.

21
Q

What are GPI anchors?

A

Amphipathic membrane anchors added after TM domain cleavage.

22
Q

What do GPI anchors regulate?

A

Protein mobility and localization in membranes.

23
Q

What is common for extracellular proteins?

A

Glycosylation.

24
Q

What is N-linked glycosylation?

A

Carbohydrates bind to the sidechain amino group of asparagine.

25
What is O-linked glycosylation?
Carbohydrates bind to the hydroxyl group of serine or threonine.
26
Where does N-linked glycosylation begin?
In the ER with the transfer of a 14-residue oligosaccharide.
27
What lipid carries the oligosaccharide in N-glycosylation?
Dolichol-phosphate.
28
Where does further glycosylation occur?
In the Golgi apparatus.
29
How many glycosyltransferases are in the human genome?
About 200.
30
What forms disulfide bonds in the ER?
Cysteine sidechains.
31
What enzyme catalyzes disulfide bond formation?
Protein disulfide isomerase.
32
What triggers the unfolded protein response (UPR)?
Accumulation of misfolded proteins in the ER.
33
What are BiP's two main functions?
Binds misfolded proteins and prevents Ire1 dimerization.
34
What do Ire1 dimers do?
Process Hac1 mRNA to upregulate chaperone genes.
35
What is the main system for protein degradation?
The proteasome (handles ~90% of degradation).
36
What components make up the 26S proteasome?
A 20S catalytic core and two 19S regulatory caps.
37
What is the function of the 19S regulatory complex?
Hydrolyzes ATP to power protein degradation.
38
What happens to misfolded proteins in ERAD?
They are moved to the cytosol and ubiquitinated.
39
How are ERAD substrates degraded?
By the cytosolic proteasome.
40
Where does the first quality control of new proteins occur?
In the endoplasmic reticulum (ER).