RNA Therapeutics Flashcards

(35 cards)

1
Q

Main differences between small molecule drugs and macromolecular drugs

A

→ Small molecule drugs have a lower mw, are more stable, are less immunogenic, are more easily purified, manufacture is readily scaled up, have simpler structures, and are often amenable to oral admin

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2
Q

Approved ASOs in the EU

A

Spinraza, Waylivra

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3
Q

5 siRNA drugs approved

A

Patisiran, Givosiran, Inclisiran, Lumasiran, Vutrisiran

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4
Q

Challenges for pharmaceutical use of nucleic acids?

A
  • Safe & effective delivery to correct target (polyanions, large size, inability to enter cells on their own)
  • Delivery systems capable of targeting tissues beyond the liver
  • Pre-existing immunity (e.g. anti-PEG Abs, viral vectors)
  • Control over dose & duration of therapeutic effect
  • Limited admin (low oral bioavailability)
  • Shelf-life stability & price
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5
Q

Chemical modifications can protect nucleic acid-based therapies against…

A

host immunogenic responses to RNA

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6
Q

What are siRNAs?

A

short dsRNAs (21-25 nt), 2 nt overhangs at 3’ ends
generated from long dsRNA fragments or chemically synthesised

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7
Q

siRNAs efficiently load mRNAs onto __ , which leads to mRNA cleavage

A

RISC complex

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8
Q

Advantage of siRNAs

A

They have near perfect complementarity with the target sequence - very specific, less immunogenic

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9
Q

The first non-viral siRNA medicine to reach the market

A

Patisiran (Onpattro)

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10
Q

Patisiran

A

siRNA-LNP approved for Transthyrin (TTR) amyloidosis

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11
Q

Patisiran is a very effective way to…

A

reduce serum levels of misfolded amyloid protein

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12
Q

What are a simple solution to the siRNA delivery problem for hepatocytes?

A

GalNAc-siRNA conjugates

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13
Q

N-acetyl galactosamine (GalNAc) has a high affinity for the __

A

asialoglycoprotein receptor (ASGPR) expressed on hepatocytes

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14
Q

GalNAc-siRNA conjugates allow for…

A

s.c. admin & less frequent dosing

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15
Q

What is Givosiran (Givlaari)?

A

FDA approved for adults with acute hepatic porphyria

→ GalNAc-siRNA conjugate that targets aminolaevulinic acid synthase 1 (ALAS1) mRNA to reduce toxic metabolites

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16
Q

3 common mechanisms utilised by ASOs

A
  1. mRNA target degradation via recruitment of RNase H enzyme
  2. Alternative splicing modification to include or exclude exons
  3. miRNA inhibition to inhibit miRNA binding to its target mRNA
17
Q

What is Spinraza (Nusinersen)?

A

ASO for treatment of spinal muscular atrophy

18
Q

How does Spinraza treat SMA?

A

Targets SMN2 pre-mRNA
- Potent inducer of SMN2 exon 7 inclusion and SMN protein expression

19
Q

How is Spinraza administered?

A

Intrathecally

20
Q

Most developments in ASO therapeutics are directed at __ diseases

A

neurodegenerative

21
Q

Advantages of mRNA-based therapy

A
  • Dose control
  • No risk of insertional mutagenesis
  • Suitable for non-viral delivery by virtue of mRNA cytoplasmic activity
  • Enables expression of any therapeutic protein
22
Q

Structural modifications of mRNA

A
  • 5’ cap modifications
  • Coding region (to improve translation)
  • PolyA tail (stability)
  • 5’ and 3’ UTR (regulates molecule specificity)
  • Modified dNTP (modulates innate immunity)
23
Q

Why is Haemophilia B a good candidate for protein replacement therapy via mRNA treatment?

A

because it is caused by a single defective protein (Factor IX) normally produced by liver

24
Q

mRNA can act as an __ to induce IFN responses

25
What is gene editing?
A type of genetic engineering in which DNA is inserted, deleted, modified or replicated at a specific location in the genome
26
Gene editing tools can induce __ in the genome that are subsequently repaired
double-stranded breaks
27
Non-homologous end joining?
An error prone repair mechanism that results in uncontrolled but predictable indels
28
What is homology directed repair?
A precise repair mechanism triggered in the presence of homologous donor DNA template that results in insertion of the template into genomic DNA
29
Biggest breakthrough in gene editing
CRISPR (clustered regularly interspaced short palindromic repeats)
30
2 nuclease domains of Cas9 that cleave DNA
RuvC- and HNH-like domains
31
Cas9 nucleases are guided by __ to generate predominantly blunt-end DSBs
single guide RNA (sgRNA)
32
sgRNA recognises a very specific sequence called __
PAM
33
What is base editing?
* Mutated Cas9 that creates single-stranded breaks (repaired more easily) * DNA deaminase allows for point mutations (less dangerous compared to CRISPR)
34
Prime editing involves Cas9 that also creates a single-stranded break, coupled with __
reverse transcriptase
35
Ex vivo gene editing being done for __ disease
sickle cell disease