Senescence Flashcards

(53 cards)

1
Q

aging is?

A

the inevitable time-dependent decline in physiological organ function that eventually leads to death

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2
Q

changes in life expectancy throughout human history

A

-changes in the environment, nutrition, and medical care –> can extend expected survival age

-the average age expectancy continues to increase
-the area under the curves has dramatically increased

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3
Q

the ______ lifespan appears to be unchanged?

A

maximum

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4
Q

central nervous system effects from aging

A

extreme shrinkage of the cerebral cortex

severely enlarged ventricles

shrinkage of hippocampus : learning and memory

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5
Q

respiratory system effects from aging

A

-clogged and deformed alveoli
(fewer and large)

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6
Q

timeline of ageing research

A

caloric restriction enhances lifespan in mice and rats (1930s)

The 1950s - medewar accumulation theory, Williams antagonistic pleiotropy

1960s- Hayflick limit

1990s- senescence observed in human aging

2000s- SASP identified: senescence-associated sensitive phenotype
, first senolytics clinical trial

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7
Q

9 hallmarks of aging, grouped into 3 categories

A
  1. the primary causes of cellular damage
    -genomic instability
    -telomere attrition
    -epigenetic alteration
    -loss of proteostasis
  2. compensatory or antagonistic responses to the damages
    -cellular senescence
    -mitochondrial dysfunction
    -deregulated nutrient sensing
  3. the consequences of aging cues: hallmarks group 1-2
    responsible for the functional decline associated with aging
    -stem cell exhaustion
    -altered intercellular communication
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8
Q

Alexis Carrel

A

studied phenomenon of senescence or aging

“on the permanent life of tissue outside of the organism”

-tissue from embryonic chicken heart, the cultures were supplied with nutrients regularly

-tissue were maintained for over 20 years– this is longer than a chicken’s normal lifespan

“all cells continued to grow indefinitely”- this was widely accepted in the 20th century

an image of a thirty-day-old culture of connective tissue. in the center there was debris of old plasma, around it is a ring of concentric layers of very active new tissue

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9
Q

primary cells

A

cells obtained from original tissue that have been cultivated in vitro for the first time

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10
Q

cell strains

A

cells were derived from animal tissue, sub-cultivated more than once in vitro (diploid)

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11
Q

cell lines

A

immortal cells that have been grown in vitro for extended periods of time (years) (heteroploid)

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12
Q

cultured normal human cells have a limited capacity to divide

A

-around 40-60 doubling before entering a senescence phase

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13
Q

cell alteration

A

phase 1: or primary culture: the beginning of culture. cells are isolated from the original tissue
-this phase terminates with the formation of the first confluent sheet

phase 2: the luxuriant growth period where cells are continuously proliferating
-cells in this phase are termed “cell strains”

  • an alteration may occur at any time giving rise to a “cell line” -whose potential life is infinite

phase 3: the period where cell replication rate slows, a phenomenon named “senescence”
-cell strains enter phase 3 and are lost after a finite period of time

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14
Q

primary causes of cellular damage

A

genomic instability, telomere attrition, epigenetic alteration, loss of proteostasis

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15
Q

compensatory or antagonistic responses

A

cellular senescence or ageing

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16
Q

eukaryotic cell

A

10 to 100 um
-can see the nucleus
-condensed chromatin
-an extension of nuclear envelope

cytoplasm: fluid within the cell that surrounds the organelles

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17
Q

building blocks of life

A

DNA, RNA, and protein

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18
Q

liquid-liquid phase separation (LLPS)

A

-underlies the formation of membrane-less organelles (MLOs)

-LLPS leads to a conversion of homogenous solution into a dense phase and a dilute phase

-intrinsically disordered proteins (IDP’s) containing, LCDs, PLDs (PrLDs) etc bind to multivalent polymers such as RNA and DNA as well as proteins

-MLOs function to concentrate proteins, and nucleic acids, and regulate gene expression

nucleolus and paraspeckles are nuclear MLOS

stress granules (SGs), RNA transport granules, and P-bodies are cytoplasmic MLO’s

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19
Q

Paraspeckle is involved in?

A

gene expression regulation, RNA processing

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20
Q

stress granule is involved in?

A

translational regulation, antiviral defense, response to stresses, store some mRNA and proteins

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21
Q

Nucleolus is involved in?

A

ribosome biogenesis

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22
Q

cajal body is involved in?

A

pre-mRNA and pre-rRNA processing

23
Q

the p body is involved in?

A

post-transcriptional modification, response to stress

24
Q

nuclear pore complex?

A

nuclear import and export, tumor, immune

25
cellular senescence
1. well-established driver of aging and age-related diseases 2. refers to the irreversible growth arrest that occurs when cells become exposed to a variety of stressors
26
cell growth
the increase in size (mass accumulation)
27
cell division:
the division of a mother cell into 2 daughter cells (cytokinesis)
28
cell proliferation
the process of generating an increased number of cells through cell division
29
eukaryotic cell division cycle
interphase: duplication of its entire cellular contents M phase: creation of genetically identical cells two main events 1. DNA replication (S phase) 2. segregation of the DNA (cytokinesis) check points G1 and G2 phases: commit to enter the next cycle M phase: mitotic exit
30
A snapshot of dividing cells
HEK293 is a human embyronic kidney cell line -invitro cell culture model for tauopathies (e.g. Alzheimer's) immunocytochemistry lamin b1: protein of nuclear lamina which is a meshwork of proteins inside the inner layer of the NE Hoechst 33342 (nuclei) a blue fluorescent dye for DNA stains
31
HEK293 expressing Dox:
GFP-tau (isoform 0N4R) is a microtubule binding protein
32
progression of the cell cycle
CDK: cyclin-dependent kinase in inactivated form cyc: cyclin binding to CDK- promotes entry into the cell cycle p16, p21, p27 : CDK inhibitors E2F: transcription factor RB, tumor supressor retinoblastoma in active form
33
cell division cycle withdrawal
1. Quiescent cells 2. terminally differentiated cells 3. senescent cells
34
Quiescence
cell cycle: reversible arrest macromolecular damage: no signaling: p27kipi dependant secretion: no
35
differentiation
cell cycle: genetically irreversible arrest macromolcular damage: no secretion: yes/no
36
senescence
generally irreversible arrest macromolecular damage: yes secretion: yes paracrine/autocrine signaling
37
genomic dna damage an telomere shortening
persistent DDR signaling -> cellular senescence and altered stemness and differentiation -> inflammation and fibrosis all considered aging -impair stem cells properties and alter its differentiation
38
mutation types
point, DNA amplification and chromosomal rearrangement substitution: change the code of the single triplet insertion: changes the genetic code of all triplets following deletion: changes genetic code of all triplets following
39
a individual cell can suffer up to ________ DNA changes per day?
one million
40
mutations and chromosome aberrations can lead to?
cancer, ageing, inborn disease
41
inhibition of _______ leads to apoptosis (cell death)
transcription, replication, chromosome segregation
42
homologous recombination
simultaneous action of large numbers of molecules (multiple protein complex)
43
cohesins
facilitate the identification of homologous sequence from the sister chromatid
44
RAD51
exchange the ssdNA with the same sequence from dsDNA
45
end joining (alternative)
simply links ends of DSB together (KU70/80) -associated with gain or loss of a few nucleotides
46
DNA replication and associated proteins at the replication fork
topoisomerase: removes helicase: unwinds SSBs: coat ligase: seals pol E: synthesize
47
telomere
short nucleotide sequences found at the end of linear chromosomes telomerase (TERT gene) : a reverse-transcriptase telomerase binds to the 3' end of the telomere sequence, along with an RNA template telomerase catalyzes the addition of bases restoring the telomere length DNA polymerase extends and seals the DNA strands
48
proliferating tissues
telomeres are shortened, when critically short, they trigger a DDR
49
post mitotic tissues
telomere dysfunction can be driven by irreparable DD within telomeres
50
persistent DDR (DNA damage response) activation
senescent phenotype 1) arrested proliferation and 2) SASP activation inhibition of DNA damage repair at telomeres -accumulation of DD at telomeres --> DDR--> cell cycle arrest or senescence or senescence like phenotype
51
post mitotic tissues
cardiomyocyte, adipocyte, neuron, osteocyte
52
how stem cells age?
stem-cell number and self-renewal do not necessarily decline with aging, but function does decline young stem cells -> many progenitors-> many effectors after physiological ageing, mutagen exposure or forced regeneration old cells-> less progenitors -> less effectors
53
fates of damaged stem cells
stem cell-> RAF mutation, p53 loss (mutations or tumor suppressors) -> transformation->cancer stem cell-> telomere dysfunction->senescence -> regenerative failure, SA-SP stem cell-> unrepaired DSBs-> apoptosis-> tissue dysfunction and failure stem cell-> y chromosome or 5q- loss, Tert gene -> dysfunction -> tissue dysfunction and failure (e,g. Myelodysplasia (MDS))