Session 9 Flashcards

(42 cards)

0
Q

What does a change in the amino acid primary sequence of a polypeptide result in?

A
  • Change is shape and function of the protein
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1
Q

What can a change in the genetic base sequence result in?

A
  • Different amino acids being coded for
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2
Q

What types of mutational changes are there?

A
  • Point mutations

- Insertions/deletions

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3
Q

What are point mutations?

A
  • Base substitutions

- Also called Single Nucleotide Polymorphisms (SNPs)

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5
Q

What types of point mutations are there?

A
  • Transition: Purine to purine, Pyrimidine to pyrimidine (more common)
  • Transversion: purine to Pyrimidine, pyrimidine to purine
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6
Q

What types of point mutations are there that occur in coding regions of a protein?

A
  • Silent mutation
  • Missense mutation
  • Nonsense mutation
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7
Q

Can point mutations in non-coding regions or outside genes have a detrimental effect?

A
  • Yes

- Can alter binding sites, promoter sequence, splice sites

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8
Q

What type of mutations can insertions/deletions cause?

A
  • Frameshift mutations
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9
Q

What is an insertion or deletion mutation?

A
  • A sequence is added or removed from the nucleic acid
  • It can be a single nucleotide (single base mutation), a few nucleotides (eg triplet repeats) or millions of nucleotides (eg tandem duplications)
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10
Q

What is a silent mutation?

A
  • A point mutation that occurs in a coding region
  • Does not alter the amino acid specified
  • Most usually a single-base change at the third codon position
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11
Q

What is a missense mutation?

A
  • Occurs in a point mutation in a coding region

- A mutation that replaces one amino acid with another

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12
Q

What is a nonsense mutation?

A
  • A type of point mutation in a coding region

- Mutation changes an amino acid to a stop codon

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13
Q

What is a frameshift mutation?

A
  • Caused by an insertion/deletion
  • Addition or subtraction if nucleotides not in multiple of three
  • Causes all subsequent triplet codes to shift causing the amino acids to change
  • Stop codons are commonly found in alternative reading frames and cause termination of translation prematurely (premature termination codon (PTC)
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14
Q

How do mutations occur? What are the the 2 main types?

A
  • Spontaneous mutations

- Induced mutations

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15
Q

How do spontaneous mutations occur?

A
  • Not caused by exposure to a known mutagen
  • Caused by errors in DNA replication as DNA bases have a slight chemical instability
  • Each individual has multiple new mutations and by chance most are not in the coding regions
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16
Q

What does the differing rate of spontaneous mutations for different genes depend on?

A
  • Size

- Sequence

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17
Q

What are induced mutations?

A
  • Chemicals and radiation can cause mutations
  • Chemicals that cause a mutation are called mutagens (are mutagenic)
  • Chemicals that cause cancer are called carcinogens (are carcinogenic)
18
Q

What are some examples of mutagens?

A
  • Alkylating agents: remove a base
  • Acridine agents: add of remove a base
  • X Rays: break chromosomes/delete a few nucleotides
  • UV radiation: creates thymidine diners
19
Q

Define mutation

A
  • A change in a nucleic acid sequence, which can be the addition of one or more (or many) nucleotides [insertion], the removal of one or more (or many) nucleotides [deletions], or the rearrangement of several (or many) nucleotides
20
Q

Define wild-type

A
  • An individual within a population displaying a wild-type trait, which is the trait that is the most common in that population
21
Q

What phenotype can a mutation cause?

A
  • Mutant phenotype

- A phenotype that differs from the common or wild type phenotype in the population

22
Q

What type of allele can a mutation in a gene cause?

A
  • Mutant allele

- Allele that differs from the common or wild type allele in the population

23
Q

What are mutations that occur in the germline?

A
  • Germline mutations

- Can be passed on to offspring

24
Q

How often do mutations occur and what is done about them?

A
  • Very frequently

- Are recognised and repaired very frequently too

25
How are mutations repaired?
- Mismatch repair | - Excision repair
26
What is mismatch repair?
- Occurs when enzymes detect nucleotides that don't pair in newly replicated DNA (eg A-C) - Incorrect base is excised and replaced - Detection of mismatches is called proofreading
27
What is excision repair?
- Damaged DNA is removed by excision of bases and replacement by DNA polymerase - Nucleotide excision repair: replaces up to 30 bases and is used in repair of UV damage and some carcinogens - Base excision repair: replaces 1-5 bases and repairs oxidative damage
28
What happens if DNA repair fails?
- Increased number of mutations will be present in the genome - The protein p53 (guardian of the genome) monitors repair damaged DNA and if the damage is too severe it promotes apoptosis
29
What happens if there are mutations in the genes encoding DNA repair proteins?
- Can be inherited | - Overall increase in mutations as errors/DNA damage isn't repaired efficiently
30
How are cancerous cells produced?
- If apoptosis of cells that have damaged DNA promoted by p53 protein doesn't occur or - Damage leads to uncontrolled growth
31
What are tumours?
- Derived from individual abnormal cells - Arise from lack of normal growth control - Generated by a multistep process - More likely to arise from cell types undergoing frequent cell division - All the cells of a tumour are of the same type - Behaviour of the tumour depends on the cell type
32
What are oncogenes?
- Genes involved in the control of cell division - Present in normal cells - Many different classes - May stimulate or inhibit growth
33
What are tumour suppressor genes?
- Genes involved in protecting the cells against one step of the path to cancer
34
What is the difference between proto-oncogenes and oncogenes?
- Proto-oncogenes are genes normally present in cells | - Oncogenes are genes after the proto-oncogene undergoes mutation or increased expression
35
What can carry copies of oncogenes?
- Viruses | - Presence of a virus means that the gene doesn't function as normal eg HPV
36
Why is PCR useful in the diagnosis of genetic disease?
- Most human mutations are single base changes and therefore are hard to detect
37
What is missing in sickle cell disease and how is this found?
- Restriction site for the enzyme MstII is destroyed (single base change) - In gel electrophoresis/southern blotting the mutated gene will have fewer/one DNA fragment(s) if digested with MstII as it lack the site (so the DNA fragment will not be cut into 2)
38
What is lost in cystic fibrosis and how is this found?
- 3 base deletion (no frameshift) so loss of phenylalanine | - PCR amplification and southern blotting
39
When is southern blotting used?
- When larger segments of DNA within and around a gene needs to be analysed - Used to analyse triplet repeat disorders eg Huntington's disease, Fragile X syndrome
40
What is Array Comparative Genomic Hybridisation (Array CGH) used?
- Screen for sub-microscopic chromosomal deletions for which the locus cannot be deduced from the patient's phenotype
41
How is Array CGH carried out?
- An array of DNA probes covering the entire genome is applied to the surface of a solid matrix - Patient DNA and normal control DNA are labelled with different coloured fluorescent tags - Equal amount of the labelled DNA are then hybridised to the probe array and the hybridisation signals are detected and compared - For probes where the signal of the normal DNA exceeds that of the patients DNA, the patient has a deletion of the chromosomal region from which that probe was derived
42
What happens to mRNA with a PTC?
- Degraded by nonsense mediated decay (NMD) - Protective mechanism - Little or no protein is produced