Stem Cells for Clinical Use Flashcards

1
Q

How can stem cells be used in biopharma?

A
  • Toxicity testing → differentiate hESCs into cardiomyocytes and hepatocytes. Test drugs to see what effects they have on these cells.
  • Screening for thereapeutic compounds → create disease specific iPSCs using somatic cell nuclear transfer. These will carry the genotypic characteristic of the genetic disease. Can use this to aid in the development of compounds that target the abnormal cells.
  • Identification of molecules that promote differentiation → use healthy pluripotent stem cells and look at compounds that promote lineage specific differentiation. Could be useful in treating developmental disease.
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2
Q

Overview 3 ways stem cells can have clinical use

A
  1. Replacement of diseased or injured cells eg)
    − Injury → non-union bone fractures (non-healing) , 2nd or 3rd degree burns, spinal cord injury
    − Autoimmune disease → eg) osteo/rheumatoid arthritis
    − Genetic disease → leukemia, heart disease, muscular dystrophy
    − Neurodegenerative disease → parkinsons, alzheimers
  2. Immunomodulation (MSCs) → inflammatory bowel disease and other inflammatory disorders
  3. Vehicles for gene therapy (MSCs, PSPs, HSCs)
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3
Q

How can human ES cells/iPS cells be used as a cell therapy?

A

• With ES cells, have the potential to generate committed precursors for transplantation therapy
• However:
− We are only just now starting to control differentiation precisely
− Problem of rejection → solve by tissue typed stem cell banks
− Need to be sure cells get to, and remain in, the correct location
− Will they survive? If so, for how long?
− Will they retain the phenotype?
− Are they homogenous?
− Will they cause tumours?

• As rejection is a problem, possibility to generate self ES cells which could be induced to differentiate into specific committed precursors for therapy
− Biopsy patient somatic cells
− Take the nucleus and put it into an enucleated oocyte
− Reprogramme and develop to blastocyst state (only occasionally possible)
− induce pluripotent stem cells (achieved in 2013 but hESCs carry genetic abnormalties – resultant cells may need gene correction)

Where do the oocytes come from?
• Legal using animal eggs under licence from the HFEA → may not be acceptable for therapy as will have mitochondrial and cytoplasmic components from an animal, and the mitochondrial genome contributes to the transcriptome
• Noggler et al, 2011 added a somatic nucleus to an intact oocyte and there were able to get blastocyst formed.
• Targeted differentiation is often inefficient and cannot be properly controlled
• Will iPSCs prove the solution? Will they be identical to normal ES cells and give normal differentiated cells?
− Would hope they would not be rejected as this is an autologous transplant
− Dogma → but in 2011 a group reported this was not the case
− Tested in mice:
− ES cells:
− B6 ESC → B6 host = teratoma formation
− 129 ESC → B6 host = rejection
− 129 or B6 ESC → SCID host = teratoma formation
− iPS cells:
− B6 iPSC → SCID host = teratoma formation
− B6 iPSC → B6 mouse = rejection

Why did this happen?
• iPS cells express embryonic antigens not normally expressed during differentiation
• 2 of these minor antigens stimulated T cell infiltration and rejection
• So human iPSCs may not be suitable for therapy

However
• Yamanaka suggested this may not be a big issue for neural injection
− Plasmid based iPSCs from autologous cynomologous monkeys differentiated to neurons and when injected back into donor brains, did not cause a significant immune response
− Even allogenic, deliberately non-matched neurons from iPSCs did not give a huge immune response
− Plasmids lack viral inserts which may have led to the retention of transgenes → virally programmed iPS cells did cause an immune response
− Group are now going on to look at allogenic tissue matched cells – a better model for allogenic transplant in humans
• Suggests that for humans, iPS therapy may not require immunosuppression

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4
Q

How can human iPS cells be used as a disease model?

A
  • Reprogramme diseased cells from a patient to give diseased iPS cells, and can differentiate them → need stem cells as disease models as they will propagate indefinitely!!
  • Also have normal control cells, which can be reprogrammed to iPS cells and differentiated
  • Then compare the two to see if there are differences
  • Found that the diseased cells don’t make incorrect amounts of a particular protein. Can then look at various drugs to see if you can correct expression.

Problem
• Control and diseased cell have different genotype
• Wont just vary by one mutation – there will be a lot of different genetic changes → even true when you use siblings

How can we be certain the disease phenotype is actually due to that mutation?
• Use CRISPR genome editing
• Correct the mutated gene in the disease phenotype → so now have a cell that, apart from the corrected mutation, has the same genotype as the diseased cell
− Compare this to the disaesed cell and see if has the same phenotype
− Can also use CRISP to insert the mutation in the control cells and then compare this with the diseased phenotype
• CRISP can now be used as a therapy as well as a disease model

• Generated chondrodysplasia disease iPSCs from a patient with a mutation in collagen oligomeic protein

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5
Q

What are the 3 requirements for cell therapy?

A

• GMP standards assure the quality of the therapeutic product for the safety and protection of the patient
• Meticulous records and a clear adult trail during all stages of production and clinical use is essential
− documents everything that has happened to those cells whilst in the lab
• Requires rigorous testing of intermediates and the therapeutic product

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6
Q

What is GMP?

A

• GMP standards assure the quality of the therapeutic product for the safety and protection of the patient
• Meticulous records and a clear adult trail during all stages of production and clinical use is essential
− documents everything that has happened to those cells whilst in the lab
• Requires rigorous testing of intermediates and the therapeutic product

Cells need to be produced under ‘clean room’ conditions:
• Purpose built to provide GMP conditions
• Air standards → very low levels of particulate matter with no contamination
• Environmental monitoring
• Regulated flow (people, materials, equipment)
• Train people in gowning procedures
• Competency assessment for eg) aseptic tecniques

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7
Q

What are the culture conditions needed to produce stem cells for therapy?

A
  • Xenobiotic free – materials produced without any animal derived substances → animal products can be recognized as foreign, or animal pathogens may be carried over
  • Feeder free → use recombinant human proteins, clinical grade small molecules and human substrate proteins, or synthetic substrates.
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8
Q

How are stem cells for therapy characterised?

A

• Self-renewal
• Phenotype and developmental profile
• Stability → karyotype and phenotype. Don’t want to administer cells that have developed chromosomal aberrations – and this is common in culture.
• Safety:
− Transformation (cancer)
− Transdifferentiation → no chance of them differentiating in the body to something different
− Contamination with pathogens
− Immunological properties
− Migration → will they stay where transplanted or go somewhere else?

Test these

  1. in vitro
  2. in animal models
  3. in clinical trials
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9
Q

How do we make differentiated cell types with a view to therapy?

A
•	Cant use spontaneous differentiation → uncontrolled, heterogenous
•	Cant use embryoid body → uncontrolled
•	Have to use directed differentiation
−	Stepwise induction of TFs
−	Exposure to GFs and small molecules
−	Modulation by ECM
−	Co-culture with appropriate cell types
−	Use of 3D scaffolds
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10
Q

How have iPS cells been used to treat parkinsons?

A

Parkinsons
• Degeneration of the substantia nigra – lack of dopaminergic neurons leading to the loss of movement coordination
• Effects in 1 in 500, around 10,000 per year in the UK
• No cure – but drug replacement of L-dopa manages symptoms
• Fetal dopaminergic neurons have been triad, with some success, but side effects include graft induced dyskineses. Source is also ethically and practically problematic.

Proof of principle in rodents and primates
• Kriks et al
− Use of small molecule to activate the Wnt pathway
− Generated floorplate neurons from fibroblast iPS cells → then turned these to functional dopamine neurons.
− By precise differentiation to precise neurons required, the researchers overcame past failures in engrafting ES derived neurons
− Gave functional repair of movement disorder
− Neurons intregrated and corrected the defects in both primates and rats

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11
Q

Describe the use of stem cells in treating Alzheimers

A

• Neurons in the brain die, leading to progressive loss of cognitive ability (dementia)
• Generally >65, but there is a juvenile onset disease – ataxia telangiectasia
• 4 million people in the UK have alzheimers
• No cure – symptoms controlled by cholinesterase inhibitors to increase ACh
• Stem cells have been in trial to try and regenerate the neurons lost, but have to be mindful of safety:
− 2009: patient developed a brain tumour some years after treatment for ataxia telangiectasia
− Patient died from the tumour
− When analysed, tumour was found to be not of patient origin, but from multiple donors

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12
Q

Describe the use of stem cells in treating spinal cord injury

A

Proof of principle
• Long distance growth and connectivity of neural stem cells after severe spinal cord injury
− Neural stem cells repair spinal cord injury in rats
− Electrophysiological relays across the site of injury
− 200 fold increase in axons
− Formation of synapses
− Emergence of new endogenous NSCs
− Improvement of hindlimb locomotion over control by week 5

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13
Q

How have ESCs been used in spinal cord injury and macular degeneration?

A

• Oct 2010:
− American company Geron announced phase I trial for use of ES cell derived oligodendrocytes of the nervous system
− Safety trial to see if the cells are safe and can enhance nerve repair in spinal cord injury
− Trialed in patients who had exhausted all possible therapies
− Nov 2011: Geron pulled out of stem cell therapies to concentrate on cancer
• The London Vision Project
− Cell therapy for macular degeneration
− Retinal pigment cells from ES cells successful
− Therapy is at the stage of safety trials
− First in man studies and phase I/II clinical trial data published:
− 50-150 x103 cells hESC-RPE cells transplanted into patient eye
− No adverse proliferation, rejection or other issues
− 78% of 18 patients had increased sub retinal pigmentation
− Visual acuity improved in 10 eyes, same in 7 and worse in 1
− Vision related quality of life increased

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14
Q

How can stem cells be used to treat diabetes?

A
  • Effects >5% UK population
  • Costs NHS £10million a day
  • Recent major increase in Type 2
  • Current therapy for Type 1 is life-long insulin injection
  • Also the pioneering pancreatic islet transplantation – but you need about 4 pancreases for this and may only need to a reduction in insulin requirement for a limited time.

• hESCs and hiPSCs produce functional glucose responsive beta cells in vitro and in vivo in mice (loss of differentiation lecture)
− Cells only produce insulin, no other pancreatic hormone
− Cells respond to different doses of glucose
− Rescue insulin deficiency when implanted under the kidney capsule

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15
Q

How can stem cells be used to treat liver failure?

A

iPSCs generated 3D vascularized liver bunds in vitro:
• hIPSC → HNF4a + hepatic endoderm
• H+ endoderm cultured with HUVECs and hMSCs
• Self organization to form liver buds with integration of vasculature
• Showed vascular perfusion + albumen + a1-AT secretion
• Improved survival of immundeficient mice after gangcyclovir induced liver failure

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16
Q

How can stem cells be used for treating CVD?

A

• Biggest killer after cancer
• Heart muscle damaged in heart attacks does not repair and is replaced by fibrous tissue
− Endogenous heart stem cells may exist which can be induced to provide repair
− Exogenous stem cell replacement could be used

Protocol:
• Even the best protocols generate more fetal-like ells
Dambrot et al, 2011
• First approach is based on EB formation but includes multiple induces, usually GF and repressions known to influence heart development in the embryo
− Can occur in regulator growth medium containing FBS and is first evidenced by contractile areas of rhythmically beating cardiomyocytes
− Addition of GFs can further enhance EBs to a more directed differentiation
− A method where EBS were placed in hanging drops on a petri dish had limited success with hESCs compared with mESCs, but differentiation in hESCs was increased using defined GF conditions and spin EBs (EBs created from precise cell numbers)
− Crucial additions include:
− TGF-b
− BMP
− Wnt inhibitors increase efficnecy
− FGF
− p38 MAPK
− SCF
• Second approach based on stromal cell co-culture, exploiting the influence of endoderm for cardiac differentiation.
− Co-culture with endoderm like cell lines or their conditioned medium
− Use of mouse END-2 cells have been used with hESCs
− However In the END-2 culture system, 85% of cardiomyocytes produced are ventricular, whereas other methods produce atrial and ventricular types
• Third method uses a high density monolyer supplemented with BMP4 and activin → reported to be very efficient.

  • Can get beating muscle with the appearance and electrical properties of cardiomyocytes from both mural and human ES cells.
  • When grafted into heats of mice and guinea pigs, shown to take on pacemaker function or improve heart infarction → but only in the short term (4 weeks)
  • At 14-16 weeks, differences no longer significant

Lu et al, 2013:
• Decellurise a heart
• Recolonise with immature hESC- cardiomyocyte progenitors
• These are able to take on contractile function

• Cardiomyocyutes also used to screen for drugs to correct disease:
− 1 in 5000 have long QT syndrome

17
Q

What are challenges for iPSC use as therapy in terms of cell differentiation?

A

Developmental consideration
• Challenge if iPSCs is to harness broad differentiation
• Problem particularly for cell types that fully mature in later stages of development, eg, HSCs with homing capacity and pancreatic cells with full glucose response
• Current differentiation strategies give cell types more closely related to their fetal types
• Technologies that enable production of cell types with adult physiologies need to be developed

Small molecules
• Less costly than recombinant proteins and enable direct manipulation of cellular pathways
• Off-target effects have no caused substantial problems in directed differentiation
• Surprising that sometimes inhibition rather than activation of signaling is necessary, eg) BMP and TGF-b inhibition to get neural

Self organization and differentiation in 3D
• Establishment of proper 3D structure is crucial for several cell types
• Although the first trails using hPSC derived retinal pigment epithelial cells for macular degeneration were based on injecting dissociated cells, there are extensive efforts to generate sheets of RPE cells to ensure proper organization
• Main strategy is to enable differentiating hPSCs to reveal their self-organising properties without the requirement of extrinsic cues
• May rely on the use of specific ECM components
• Some cells don’t need it, ig) cardiomyocytes been found to engraft without prior cell assembly
• But liver bud structures do need it

Cell Purification
• Progress in generating genetic reporter lines to purify defined cell types
• eg) CRISP used to define the appropriate stage of midbrain dopamine neurons by comparing 3 geneticaly defined stages from dividing precursors to differentiating neurons
• However, for translational application, may be better to avoid gene editing

18
Q

What are challenges for iPSC as cell therapy in terms of defining cell fate and function?

A

Novel Assays to Characterise Cell Fate in Vivo
• Flow based quantification of marker expression
• Microarray and RNA sequencing platforms
• Assays that define the chromatin state of differentiated progeny

Assays to Assess in vivo Survival and Function
• Early studies mostly had to use histology
• Advances in PET and MRI allow development of accurate spatiotemporal maps of grafts
• Some haven’t reached the clinic yet
• bioluminescent imaging and magnetic labeling of grafted cells used for neural, endothelial and muscle
• Genetic tracking

Autologous cell sources
• Full immunocompatability is hard to assses for human cells because of lack of an experimental autologous graft paradigm
• Concern for human iPSCs is acquisition of genetic and epigenetic alterations during reprogramming → but this isn’t limited to human iPSCs, and now we don’t need integrating viral vectors
• Retainment of epigenetic memory
• Regulatory hurdles, cost and timeframe for approving unique iPSC based products for each individual → costs would be prohibitive
• Nontheless, researchers in Japan currently seeking regulatory approval for the first such study for patient specific iPSC derived RPE cells for treating macular degeneration
• Scalability and GMP is a hurdle