stereochemistry Flashcards

(37 cards)

1
Q

what is stereochemistry?

A

study of isomers

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2
Q

what are isomers?

A

compounds that have the same molecular formula but are chemically distinct from each other
-the same way in which the isomers differ depends on the type of isomerism

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3
Q

what are two types of isomerism?

A

-structural
-stereoisomerism

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4
Q

what is structural isomerism?

A

-where compounds have the same molecular formula but differ in the position that the atoms are connected to each other
-they can have very different physical and chemical properties

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5
Q

what is stereoisomerism?

A

where compounds have the sane molecular formula and have their atoms bonded in the same order but can differ in their three dimensional shape

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6
Q

what are the three types of stereoisomerism?

A

-geometric
-optical
-conformational

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7
Q

when does geometric isomerism occur?

A

-when there is rigidity in a molecule so it can lead to restricted rotation

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8
Q

state the two common cases where there is rigidity in a molecule that leads to restricted rotation…

A

-when there is Pi bonds in alkenes
–in cyclic structures

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9
Q

what are the two types of geometric isomers?

A

-Cis and Trans geometric isomers
-E/Z geometric isomers

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10
Q

what happens in cis/trans isomerism?

A

-the double bonds in the alkenes restricts the free rotation of the bond at room temp and atmospheric pressure.This is because the Pi bond would have to be broken to allow rotation

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11
Q

why can cis-trans isomerism not occur if the atoms bonded to one edge of the double bond are the same?

A

-because the structures are flat and so by turning the molecule over (not requiring the breakage of any bonds) you have the same molecule

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12
Q

when does E/Z isomerism occur?

A

when there is more than two different groups attached to the alkene double bond so you use the E/Z nomenclature system rather than cis/trans

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13
Q

how do you do E/Z isomerism?

A

-Prioritise the groups on either side of the double bond and label them 1 (top priority) or 2 (lower priority).
-if the two top priority groups are on the same side this is known as the Z isomer (similar to Cis). If they are on opposite sides then this is known as the E isomer (similar to trans)

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14
Q

how do you determine priority for E/Z isomerism?

A

-Look at the atom directly attached to the double bond. The higher its molecular mass the greater its priority e.g. I > Br >Cl > O >N > C
-With isotopes the higher mass isotope has priority e.g. 37Cl > 35Cl or 3H > 1H
If the two atoms bound to the double bond are the same, look one bond away and find out which one has the highest mass atom (e.g. Br). When this is the same then count the number of these higher mass atoms. If you can still not distinguish priority then one more bond away and repeat the process.
Multiply bonded groups i.e. C=O, C=C, or C≡C are counted as almost twice (double bond) or three times (triple bond). Except –it is important to note that two single bonded atoms have greater priority than a double bonded atom.

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15
Q

how do you work out priority in E/Z isomerism if the two atoms bound to the double are the same?

A

-If the two atoms bound to the double bond are the same, you look one bond away and find out which one has the highest mass atom (e.g. Br).
-When this is the same then count the number of these higher mass atoms. If you can still not distinguish priority then one more bond away and repeat the process.

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16
Q

how do you work out priority in E/Z isomerism if you have multiple bonded groups?

A

-if you have multiple bonded groups i.e. C=O, C=C, or C≡C they are counted as almost twice (double bond) or three times (triple bond).
- Except it is important to note that two single bonded atoms have greater priority than a double bonded atom.

17
Q

what is a chiral centre?

A

-a carbon with 4 different groups attached to it

18
Q

what are enantiomers?

A

-any compound that cannot be superimposed onto its mirror image,the two mirror image forms are optical isomers of each other

19
Q

what 2 properties are different for a single pair of enantiomers?

A

-interactions with other chiral substances
-interactions with plane polarised light

20
Q

what does it mean when a compound is optically active?

A

-it can rotate plane-polarised light

21
Q

what does it mean if an enantiomer is dextrorotatory?

A

-the enantiomer can rotate plane polarised light to the right
-it is sometimes given the symbol D

22
Q

what does it mean if an enantiomer is levorotatory?

A

-its mirror image of the other enantiomer will rotate plane polarised light to the left
-it is sometimes given the symbol L

23
Q

what is a racemic mixture?

A

-a mixture of equal proportions of any pair of enantiomers

24
Q

what are the rules for assigning R and S nomenclature to an enantiomer?

A

-rank the 4 groups surrounding the chiral centre according to priority (RMM), 1for the highest,4 for the lowest
-rotate the compound so that the lowest priority group faces away from you
-if the priority numbers increase in a clockwise direction then this enantiomer is the R enantiomer
-if the priority numbers increase in an anticlockwise direction then this enantiomer is the S enantiomer

25
what is the maximum number of stereoisomers for a molecule?
-2n,where n is the number of chiral atoms -for 2 chiral centres there are 2^2=4 stereoisomers -for 3 chiral centres there are 2^3=8 stereoisomers
26
what are diastereoisomers?
-any optical isomers that are not enantiomers (mirror images)
27
how are diastereoisomers different from enantiomers?
-they are chemically and physically different, they have different melting points, boiling points and solubilities and this makes them easier to separate from each other
28
what are meso compounds?
-when a molecule with chiral centres doesn't have a different mirror image -it is therefore optically inactive and does not rotate plane-polarised light
29
what are the rules for drawing fisher projections?
-all carbons must be drawn in vertical orientation -vertical lines represent 3D bonds that lie in the plane of paper or behind -horizontal bonds represent 3D bonds that lie out of the plane -the intersection of vertical and horizontal lines represents a chiral carbon
30
how can you work out if a compound is R or s from a fisher projection?
-if the H (or lowest priority group) is on the vertical line, prioritise the groups and see if its clockwise (R) or anticlockwise (S) -if the H (or lowest priority group) is on the horizontal lines, look at the direction of priority and reverse it
31
what molecules other than those with chiral carbons, display optical activity?
-any compound with a tetravalent atom (i.e an atom with 4 different groups around it) -biphenyls which cannot rotate around the sigma bond, due to steric hindrance
32
33
what is the link between stereoisomerism and biological activity?
-the binding of an agonist to specific sites on the macromolecules enzymes and receptors can cause a biological response -enzymes and receptors are chiral macromolecules and when a chiral molecule binds to them,diastereoisomers is possible
34
how do some pharmaceutical agents work?
-by binding to biological macromolecules acting as either agonists (causing a biological response) or antagonists (blocking a biological response)
35
why are many optically active compounds used as racemates?
-because of the difficulty and expense of either synthesising pure enantiomers or separating racemic mixtures -however damage can be done by done fully understanding the biological difference between isomers
36
give an example of damage caused by not fully understanding the biological difference between isomers...
-the drug thalidomide where the S isomer was thought to have led to tragic teratogenic effects which resulted in "thalidomide children"
37
what are examples of stereoisomerism of drug molecules?
-the S isomer of ketamine is responsible for its anaesthetic action, while the R isomer is responsible for its psychotic effect