Study design dot point 1 Flashcards

Proteins as a diverse group of molecules thatcollectively make an organisms proteome includingenzyme catalysts in biochemical pathways

1
Q

Enzymes

A

Organic catalysts lower the activation energy of reactions to increase the rate of chemical reactions.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Substrate

A

Rectant of an enzyme facilated reaction

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Catalyst

A

molecules that speed up a chemical reaction without itself undergoing any permanante chemical change

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Active site

a

A

substrate binding site which the substrate’s shape is complemenary to

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What happens if the substrate is increased

A

the enzymefacilated reaction RATE speeds upbecause the substrate with outcompete the competiive inhibotr to bind to te active siteof the enzyeme

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

How do enzymes catalyse reaction

A

Enzymes reduce activation energy to increasetherate of reaction(catalyse reactions)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Enzyme inhibiton

A

When an enzyme is prevented from catalysing a chemical reaction

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

hOWt does competitive inhibition differ from non competiitve inhibition

A

Competitive inhibition is when the active site is blocked by inhibitiors

Whereas, non compeitive inhibtiors change the shape of the active site by binding toan allostraic site.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

An example of compeitiveinhibiton

A

An example of a competitive inhibitor is cyanide as cyanide disrupts cellular respiration by preventing the substrate from binding to the active site.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

allosteric site.

A

a regulatory site on a protein that allows molecules to either activate, inhibit, or turn off, enzyme activity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

allosteric site. vs active site

A

The active site’s shape is complementary to the substrate’s shape, allowing them to fit together like a lock and key. Whereas, an allosteric site is a regulatory site on a protein that can affect enzyme activity by activating, inhibiting or turning off enzyme activity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Why is it advantageous the cell to inhibit a biochemical pathway

A

It is advantageous for the cell to inhibit a biochemical pathway because this results in the regulation the activity of enzymes, allowing for precise control over metabolic processes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

How do enzymes work

A

enzymes work by reducing the activation energy, thereby increasing the rate of reaction

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

8 features of enzyesm

A

1.reusable-not broken down during the chemical reaction

2.specifci meaning enzymes are compememnatary to usually one active site.

3.reversibe-

  1. enzymes speed up(catalayse) reactions by lowering theactivation energy of a reaciton but dont create new reactions
  2. Most enzymes Are proteins, but some RNA molecules are capable of acting like proteins
  3. Are a subset of a catalyst-
  4. act on an entire biochemical pathway
  5. Enzymes are typically seen above the arrow in chemical reactions
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

How does temperature affect enzyme reactions?–be able to answer both less makr questions nad high mark questions

A

,At low temperatures kinetic energy is low, therefore fewer and slower collisions between enzymes andsubstrate, causing become enzymes to become inactive and to perform poorly.

Whereas, as temperatures increase,kinetic energy is very high n collisons between enzymes and the substrate, resulting in enzynmme denature

This results ina conformational change inthe active siteof the enzyme, causign thesubstrate to no longer fit

and the rate of reaction will drop to optimal temperature.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

WHat temperature do enzymes perform the most effiectvely

A

37 degress celsius

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

Anabolic reaction

A

reactions that build smaller molecules into larger molecules

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

Catabolic reactions

A

reaciton that breaks down larger molecules into smaller moleculees.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

How does PH affect enzyme reactions?

A

PH affects enzyme reactions bc Each enzyme has an optimum pH range, therefore Changing the pH outside of this range will slow enzyme activity.

Additonally,Extreme low/high pH values can cause enzymes to denature.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

How do enzyme concentration affection reaction rates

A

Increasing enzyme concentration will speed up the reaction, as long as there is substrate available to bind to the active site.

Whereas, decreasing enzyme concentration will decrease the rate of reaction as there is less enzymes for the substrate bind to.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

Whathappenswhent
the active site isfull

A

Equiblrim will be reached when the active site is ful wich is called the saturation point resulting in a reaction plateau

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

What is the differnece between denaturation and inactivation

A

denaturation involves a change in the enzyme’s structure and is irreversible. Whereas, inactivation involves a loss of catalytic activity without necessarily altering the enzyme’s structure and is also irreversible.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

Difference between anabolic and catabolic reactions

A

anabolic reactions that build smaller molecules into larger molecules eg.photosythneiss, whereas catabolic reactions are reactions that break downlargemolecuesinto smaller molecules eg. carbs brokendown into glucose by amylase

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

How is digestion a catabolic reaction

A

large molecules of food are broken down via chemical or mechnanicalmethods

25
How isphotosyhtnexssi a anabolic reaction
carbon dioxide and water are used to build glucose
26
compare competitive and non-competitive inhibition
A competitive inhibitor competes with the substrate for binding at the active site of the enzyme. Whereas, A noncompetitive inhibitor binds at a site distinct from the active site
27
explain how increasing substrate concentration can distinguish between competitive and noncompetitive inhibition
1site,increasing substrate concentration cause substrateto outcompete the compeitive inhibitor to bind totheactive site oftheenzyme enzyme. However, noncompetitiveinhibitors cannot be outcompeted to bind to the activesite enzyme because they alter the shape of active site onan allosteric site to fit to thesubstrate.
28
explain how decreasing substrate concentration can distinguish between competitive and noncompetitive inhibition
As the substrateand competitive inhibitor compete for space on the active site,decreasing substrate concentration will increase theavaliabity forthe competitive inhibitor to bind to the active site. Therefore, the compeitive inhibitor will outcompetee the substrate to bind tothe enzyme. WWheras,decreasingsubstrateconcentrationwillnot affect the noncomeptiiveinhibtior as noncompetitiveinhibitors willnot outcoompete thesubrate to bind to the activesite enzyme because they alter the shape of active site onan allosteric site to fit to thesubstrate.
29
Why do we vomit, in terms of enamel, sensitivity, PH, enzymes and tooth sensitivity.
Vomit occurs in order to get rid of any harmful substances or undigested material from the body. It contains gastric acid as well as proteolytic enzymes which causes enamel erosion and thus tooth sensitive
30
High temperatures are dangerous for enzymes because
it results in denaturation of enzymes
31
Compare PH levels of neutral, acidifc and alkaline
1-6=acidic 7-neutral 8-14-basic/alkaline
32
What does PH stand for
potential of hydrogen
33
Proteom what is andhow is it created
the complete set of proteins expressed by an organism and are created
34
When a substrate binds to an enzyme's active site, together they form a
enzyme substrate complex
35
What is a conformational change and when does it occur
a conformational change is a change in the shape of a protein molecule often induced by environmental factors. It occurs upon binding of the substrate and the active site.
36
exergonic reaction
chemical reaction that releases energy
37
endergonic reaction
a chemical reaction that absorbs energy
38
what kind of chemical reaction compare between anabolic and catabolic reactions
Catabolic reactions are exergonic, whereas all anabolic reactions are endergonic.
39
Why does an exergonic reaction require activation energy?
activation energy is required to initiate an exergonic reaction
40
When molecules cant absorb enough chemical energy because activation energy is high, what can be done to create a chemical reaction
1.add energy 2. lower activation energy
41
Why does lowering the activation energy required for a reaction to take place?
Lowering activation energy means that less energy is required for the reactions to reach the transition state at which old bonds break and new bonds form for achemical reaction to occur
42
Anabolic reactions require lots of activation energy, how is this large quantity of activation energy produced
A cell must couple a catabolic, exergonic reaction with an anabolic, endergonic reaction.
43
affinity
the attraction between the active site and the substrate
44
How doesthe substrate bind to the active site for catabolic reactions
substrate binds to the active site because it is almost complemenatry. Then,uponbinding the enzyme changes shape, which stresses the bonds in the substrate helping to catabolise into 2 products.
45
How does thesubstrate bind to the active site during anabolic reactions
substrate binds to the active site because it is almost complemenatry. Then upon binding, the enzyme changes shape making it easier for a bond to form between them to ultimately create a product.
46
In an exthoermic reaction the energyof the products is
lower than energy of the reactants
47
In an endothermic reaction,the energy of the products is
higher than the energy of thereactants
48
Intercelluar enzymes
enzymesthat perofmr their functions inside of thecell
49
extracelluar enzymes
enzymes that perfomrtheir functions otuside of the cell
50
Zymogen
proteins that contain an inactive enzyme that functions to enable the production of inactive enzymes within the cell that are not activated until after they are secreted
51
How do enzymes work
Enzymes lower activation energy requiredfor thechemical reaction to take pace
52
How do enzymes differ from catalysts
enzymes are a type of biological catalystthat speedsup chemical reactionswithin living organisms
53
What is the activation energy?
Activation energy is the minimum amount of energy required to energise atoms or molecules to state where thye cna undergoe a chemicalreaction.
54
How do certain enzymes not work until they reach their intended location and whatare these called
zymogens do not work until theyreahc their intedned location as they are not yet activated Vesicles also prevent damaged from the cell occuring bypreventing a chemicalreaction from occurring
55
Biochemical pathway
a step by step series of interconnected biochemical reactions in which each step is catalyzed by a specific enzyme
56
saturation point
no more solute will dissolve in the solve
57
why can noncompetitive inhibitors not be outcompeted by the enzyme to bind to the substrate
it is because non-comp inhibitors do not bind to the active site and instead binds to an allosteric site of the enzyme causing a change in the conformation of the active site and thus, is irreversible
58
how does concentaton affect enyzme affecitng not inrefernce to competiive inhibtior
morecollisons **look at the introductoon of sac poster its there