Terms Flashcards

(67 cards)

1
Q

Genetic Drift

A

Isolated population will change with time, due to pressures and random events

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2
Q

Gene Flow

A

Intermixing of populations, from small numbers or large migrations adds new alleles, brings in mutations

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3
Q

Founder Effect

A

very few founders, may mean gene frequencies do not reflect larger popluation

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4
Q

Segregation

A

Two copies of each gene are in the parent but the offspring will receive one. There is an equal probability to inherit either one of those copies

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5
Q

Independent Assortment

A

Each gene is inherited independently of the other genes. Genes affecting the same function are not not inherited as a group.
The exception occurs in cross-linking

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6
Q

Multiplication rule

A

Probablility of multiple events occurring together. Multiply the risks of each event to get overall risk

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7
Q

Addition rule

A

Probability of either one or another of multiple events occurring. Add risks of each to get overall risk. All add up to one.

Example, Probability of having three kids and of those three having at least on boy and one girl. 1/8 all girls and 1/8 having all boys = 3/4 chance of that not occurring.

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8
Q

Autosomal Dominant

A

Single copy of the gene can cause the phenotype.

Usually half of children will be affected (50% recurrence risk). Father-Son transmission rules out x-linked.
No-skipped generations (a positive phenotype has to be present to pass down trait)

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9
Q

Autosomal Recessive

A

Disorders are rare individually generally as two parents have to be carriers (Aa x Aa). Recurrence risk is 25% with two carrier parents.

Possible to skip a generation. Males and females are equally as likely which rules out sex-linked pattern

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10
Q

New Mutation

A

Occurs when the inheritance pattern shows no other affected individuals when they would be likely as in autosomal dominant or x-linked
Parentage of child is confirmed
and Neither parent has evidence of carrying the mutation.

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11
Q

Germline Mosiacism

A

Mutations occur in one of many cells that produce many or few germ cells. As a result Autosomal dominants or X-linked disorders appear in very unlikely pedigress or odd proportions.

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12
Q

Reduced Penetrance

A

Phenotype mild to non-existing in some individuals due to modifying genes. May affect children more severely.

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13
Q

Age-dependent Penetrance

A

Combination of delayed age of onset and reduced

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14
Q

Variable expression

A

Severity of disorder depends on expression. One child may have 3 out of the 5 different anomalies associated while another child may have all five.

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15
Q

Pleiotrophy

A

Multiple effects from one mutation. The single mutated gene can affect multiple tissues.
DNA transcription factors and extracellular matrix proteins.

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16
Q

Alellic heterogeneity

A

Multiple mutant forms causing different effects of the same gene. Example is the gene that codes for hemoglobin. Mutation causes hemoglobin disorders, sickle cell and B-thalassemias.

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17
Q

Locus Heterogeneity

A

Multiple genes affect one pathway and a similar disorder can be produce but different genes may be affects. Urea cycle defects all cause mental retardation

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18
Q

Anticipation

A

Some disorders are more severe in later generations (such as myotonic dystrophy) or they may occur earlier (E.g Huntington’s disease).

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19
Q

Repeat expansions

A

Short sequence of direct repeats in gene. Some are repeated codons (E.g. CAGs in Huntington’s disease).

In Meiosis repeats get longer

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20
Q

Proband

A

A particular subject being studied or reported on. Denoted with an arrow on a pedigree.

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21
Q

Consanguinity

A

Marrying and having children with a blood relative (someone of the same kinship).

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22
Q

Coefficient of Relationship

A

The porbability of sharing a common gene from an ancestor.

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23
Q

X-linked Recessive

A

Passed through the female line, appear mostly as affected males if they do not reproduce. Affected females will have all affected boys.
No father-son transmission. Passage through females can give “skipped generations”

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24
Q

X-Linked Dominant

A

More females will be affected. In all generations. No father son transmission. All Daughters of affected males are affected.

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25
Dosage Compensation
Females have two X chromosomes. One of the two need to be turned off (X-inactivation) to prevent the appropriate amount of gene expression
26
Barr Body
Inactivated X chromosome. Inactivation is random (half cells have one X and the other have the other X), fixed (All descendants have the same X inactivated), and incomplete (A few genes escape inactivation; may have counterparts on Y)
27
Vertical Transmission
Seen in every generation
28
Y-Chromosome Inheritance
Holandric inheritance Strictly father-son. Y Chromosome has genes that are involved in sex determination, spermatogenesis and testicular function. Have homologues on the X chromosome all in one region that escapes inactivation. X-Y crossing over can occur in this region.
29
Mitochondrial Inheritance
Inheritance is strictly maternal for mitochondrial inheritance. Mutation rate is high in the kidney because of lack of repair systems and lots of free radicals from oxidative metabolism. Condition related to variable expression. Percentage of mutant molecules determines status of mitochondrial function.
30
Heteroplasmy
Mutation in mictochondria may be present only in some cells.
31
Sherman Paradox
Normal transmitting males occur but not affected, but have affected descendants. The mothers of transmitting males have less affected daughters than the daughters of transmitting males. Daughters of normal transmitting males are never affected but their children may be
32
Imprinting
Genes modified during gametogenesis, which controls the function of those chromosomes in offspring.
33
Centimorgans
The percent of the chromosomes the recombine between two genes. Really a measurement of how close two genes are to one another. 1 cM = 1% of the chromosomes recombine between two genes.
34
Linkage Phase
Arrangement of alleles on each chromosome. Can be used to follow a gene in a family. Geneticists can trace the inheritance of a linked marker rather than mutation which is helpful if the area of the gene is unknown but the linked marker is.
35
LOD score
Logarithm of odds The LOD score compares the likelihood of obtaining the test data if the two loci are indeed linked, to the likelihood of observing the same data purely by chance Used to calculate the likelihood that observed data fits a given hypothesis and compare that to the likelihood gene are unlinked. This creates a likelihood ratio or the "odds" genes are linked Values of 3 or above is significant for linkage (1000x greater for linkage). Value of -2 suggest no linkage (100x less likely for linkage)
36
Polymorphism
When two or more phenotypes clearly exist Required for a marker in gene mapping to be polymorphic. Markers in microsatellites have advantages of being highly polymorphic, scatter throughout the genome and easy to screen
37
Uninformative mating
Some combinations do not give enough information to determine linkage phase. Can be because same marker allele on both chromosomes or cannot follow through subsequent generation.
38
Linkage Disequilibrium
A mutant gene more likely to carry a specific allele at linked marker. With time, recombination will separate mutation from marker. Can give a rough estimate of mutation's age
39
Linkage equilibrium
Initially a mutation will only be associated with certain markers. Through time recombinants occur between chromosomes. Eventually equilibrium will look like the normal population
40
Association
When a specific allele significantly increases the risk a person is affected but there is no known linkage
41
Genome Wide Association Studies
GWAS is used to locate genes. Many markers are screened in one test. Can screen many markers such as Single nucleotide polymorphisms
42
Chromosome Anomalies for mapping genes
Changes to chromosome are useful. Series of deletions allow small common region to be identified. Translocation breakpoints may be in a specific gene
43
Caenorhabditis elegans
nematode Short generation, complete cell fate map Alternate body plan, not a vertebrate
44
Drosophila melanogaster
fruit fly Short generation, easy to breed, lots of mutants Alternate body plan, must maintain live stock
45
Danio rerio
zebrafish Transparent embryos, easy to breed Small embryo difficult to manipulate
46
Xenopus laevis
Clawed frog Large transparent embryo, can manipulate easily Tetraploid, makes genetics difficult
47
Gallus Gallus
Chicken
48
Mus Musculus
Mouse
49
Three types of genetic mediators in development
Paracrine signalling DNA transcription factors Extracellular matrix proteins
50
Four major families of paracrine molecules
- Fibroblast Growth Factor (FGF) - Hedgehog proteins - Wingless family (Wnt) - Transforming Growth Factor-B (TGF-B)
51
FBFR3 Mutation
FGF receptors 3 Ig-like domains, Transmembrane domain, and split kinase domain Expressed in growing bones. Mutations cause skeletal dysplasias Autosomal dominant FGFR3 mutation
52
Three families of Transcription factors
Homeobox - HOX, PAX, EMX, MSX High-mobility group (HMG) - SOX family T-box family - TBX
53
SOX Family Transcription factor
Sry - sex-determining region of Y. Regulates SOX9 expression in genital ridge and chondrogenesis and Col2A1. Mutation causes camptomelic dysplasia. Short limbs, sex-reversal of XY fetuses
54
Extracellular matrix proteins
Important in development that create the scaffold for tissues. Collagens, fibrillins, elastins, laminins, fibronectins, tenascins. Cells bind using integrins and glycosyltransferases
55
Sonic Hedgehog
Involved in neural tube, somites, limbs and left-right axis in deleopment. Defects disrupt midline brain development. Holoprosencephaly is severe form. Severe mental retardation and early death.
56
HOX gene expression
Four patterns of similar genes but on different chromosomes. HOXA, HOXB, HOXC, HOXD. Up to 13 genes but only 39 total. Paralogs are genes in same relative position
57
Temporal colinearity
3' genes are expressed earlier (i.e HOXA1 is expressed before HOXA2
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Spatial colinearity
3' genes expressed more anteriorly
59
Homeotic Transformation
Missing gene in Hox gene expression means segment identity wrong. Segment transforms incorrectly
60
Noggin, Chordin and Bmp4
Noggin and Chordin bind Bmp3 to prevent it from binding to receptor. Bmp4 is a ventralizing signal so when inhibited by Noggina and Chordin the segement becomes posterior
61
Left/Right Axis defect
Asymmetrical expression of SHH. Causing the left side expression of nodal (TGFB). Mutation in dynein which decreases motor protein in cilia which is why situs inversus patients have increased risk to upper respiratory tract infections.
62
ZIC3
Zinc-finger protein of the cerebellum. Gli transcription factor family, X chromosome. Affects males with randomization defects. Heterozygote females have L/R reversal.
63
FGF8
A candidate for inductive signal. signal mediated by Fgf10 expression in mesoderm. Wnt2b and Wnt8c maintain Fgf10 expression. FGF8 loss shows a lack of development of the AER (apical ectodermal ridge). The ZPA (Zone of Polarizing activity) uses SHH to maintain the AER. AER is essential for dorsal/ventral and left/right axis
64
IPF1
gene for development of the pancreas B-cells to express insulin. IPF1 mutations block pancreatic development. Meaning that IPF1 gene not only regulates insulin but also pancreatic cell maturation and differentiation
65
Knudson's Two-Hit model
Retiboblastoma bilateral, runs in families and unilateral appears sporadically. In a familial or bilateral, offspring are increased risk and a mutation in the remaining good copy causes mutation in cells.
66
Cancer Inheritance Paradox
Mutations show a dominant inheritance pattern in pedigrees. Recessive at cellular level because a second mutant copy is required to have complete loss of function of that gene.
67
Loss of Heterozygosity
Heterozygous loci are studied for genetic mapping of cancer genes. Lost markers indicate loss of heterozygosity near gene of interest. Comparing normal cells in tumor cells in which the tumor cell has lost a marker indicate loss of heterozygosity. This gives the probability of the gene being located on that chromosome