TOOLS FOR GENE THERAPY Flashcards

1
Q

What are the three main mechanisms of gene therapies

A
  1. replacing a disease-causing gene with a healthy copy of the gene
  2. inactivating a disease-causing gene that is not properly functioning
  3. introducing a new/modified gene
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

what are the most commonly used tools for neurological disorders

A

adeno-assoicated viral vector and lentivirus vectors

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

AAV characteristics (5)

A
  • non-envleoped, ssDNA parvoviruses
  • non-pathogenic
  • 4.7kB DNA packaging capacity
  • can transudce both dividing and non-dividing cells
    -protein shell more defined based on serotypes
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Lentivirus vectors properties (6):

A
  • commonly used for ex vivo gene therapy
  • enveloped, ssDNA viruses
  • packaging capacity of 10kb
  • broad cell tropism (e.g. neurons and glia)
  • ability to transduce both dividing and nondividing cells
  • integration into host genome leads to stable transgene expression
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Life cycle of AAV

A
  • binds to surface repector - enters cell via clathrin-coated pit
  • vector particles accumulate around perinuclear space
  • enter the nucleus via nuclear pore complexes
  • inside nucleus - the vector genome released and transcribed
  • resulting in expression of transgene
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Life cycle of LVs:

A
  • derived from HIV-1
  • LVs integrate preferentially in introns of transcriptionally active genes
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Ex vivo gene therapy

A
  • remove bone marrow - transduce HSC with viral vector carrying gene
  • condition patients and replace transduced HSCs
  • all progeny cell lineages express the gene incl. microglia
    -microglia progenitor cell can mirgate and cross BBB
  • expression in the brain
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Advantages of Ex vivo gene therapy (3)

A
  1. widespread therapy throughout brain
  2. other affected organs can be targeted
  3. protocol for bone marrow transplants well established.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Disadvantages of Ex vivo gene therapy (3)

A
  1. Only suitable for certain diseases
  2. Risks of insertional mutagenesis
  3. Risks associated with bone marrow engraftment.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Retroviral vectors

A
  • Derived from moloney murine leukimia virus
  • large packing capacity (7-9kB)
  • produce at relatively low yields
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Adenoviral vectors

A
  • large packaging capacity (up to 36kB)
  • trasngene does not integrate into the host genome and instead remains episomal
  • leads to stable and sustained in brain
  • direct infusion into brain results in gene transfer to broad range of cell populations
  • in vivo delivery at high dose - cytotoxicity and neuroinflammation
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What is biodistribution

A

the spreading of the vector in tissue/organs following administration

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

In vivo gene delivery to CNS options

A
  1. Direct intracranial (intraparenchymal) injection - bypass BBB
  2. Delivery and distribution through the CIV intracerebroventricular, IT intrathecal, CM cisterna magna
  3. systemic administration of vectors that cross BBB.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Battens disease and parenchymal administration

A
  • rare autosomal recessive lysosomal storage disorder
  • caused by loss of TPP1 enzyme, causing severe neurodegeneration and vision loss.
  • targetted using AAV2-hCLN1
  • drilled six holes -12 injections
  • slowed disease progression
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Advantages of Parenchymal administration (4)

A
  • Direct delivery of vector to the brain
  • Vector expression is restricted to a limited region of brain
  • Ideal if very specific region affected (e.g. PD or HD)
  • Minimal dosage with reduced risks
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Disadvantages of Parenchymal administration (3)

A
  • Spread of virus is limited
  • Not always feasible for whole brain pathology
  • Surgically invasive.
17
Q

what is ICV delivery

A

intracerebroventricular - an intrathecal method.

18
Q

what is CM delivery
- intrathecal

A

cisterna magna delivery - one of three principal openings in the subarachnoid space. Problematic due to sensitive vasculature.

19
Q

what is IT delivery

A

intrathecal delivery.
- non-invasive and rapid delivery to the CSF.

20
Q

intrathecal delivery advantages (4)

A
  1. direct delivery of vector to the CNS
  2. administration of larger doses
  3. widespread delivery throughout the CNS
  4. clinically translatable
21
Q

intrathecal delivery Disadvantages (2)

A
  1. invasive procedure - especially ICV/CM
  2. penertation to deeper/distal areas remains a question
22
Q

systemic delivery

A
  • achieves body-wide cellular targets
  • but off-target? can be an advantage but…
  • AAV are optimal for this
  • currently used as a one-off as patients develop immune responses to protein capsid, vector genome and transgene product.
  • PLUS, most of Pop has pre-existing ABs against WT AAV.
  • LIVER toxicity so worrying.
23
Q

What is Capsid Engineering?

A
  • novel synthetic capsids with improved neuronal tropisms express a hundred times more than standard AAV9
  • Not always translatable to humans.
24
Q

Advantages of systemic administration (3)

A
  • Minimally invasive.
  • Can target the entire nervous system.
  • Can also target other affected organs (global delivery).
25
Q

Disadvantages of systemic administration (3)

A
  • High dose correlated with higher costs and risks
  • Immunogenicity and possible toxicity
  • Early intervention may be essential in certain diseases.
26
Q

what is mutagenesis

A

Mutagenesis is the process by which an organism’s deoxyribonucleic acids (DNA) change, resulting in a gene mutation