Topic 2 Flashcards

(101 cards)

1
Q

What is a signal transduction pathway?

A

A sequence of molecular events and chemical reactions that lead to a cell’s response to a signal.

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2
Q

What are the three steps of a typical cell signaling process?

A

Signal reception, signal transduction, cellular response.

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3
Q

What role do receptors play in cell signaling?

A

Receptors specifically bind signaling molecules (ligands) and initiate the cell’s response.

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4
Q

What are the four main types of chemical signals in multicellular organisms?

A

Autocrine, juxtacrine, paracrine, and endocrine (hormones).

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5
Q

Define autocrine signaling.

A

Signaling where the cell releases a molecule that binds to receptors on its own surface.

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6
Q

What is juxtacrine signaling?

A

Direct cell-to-cell communication through adjacent contact, such as through gap junctions.

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7
Q

Define paracrine signaling.

A

The release of signals that diffuse locally and affect nearby cells.

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8
Q

What is endocrine signaling?

A

Long-distance signaling in which hormones are transported via the circulatory system.

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9
Q

What determines if a cell can respond to a particular signal?

A

The presence of the appropriate receptor protein.

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10
Q

What is ligand specificity?

A

A receptor’s ability to bind only a specific signaling molecule.

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11
Q

What is the Law of Mass Action as applied to receptors?

A

Reversible binding between a receptor (R) and a ligand (L): $$R + L \rightleftharpoons RL$$

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12
Q

What does a small dissociation constant ($$K_D$$) indicate about a receptor-ligand interaction?

A

High affinity between receptor and ligand.

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13
Q

Where are cell-surface receptors found?

A

In the plasma membrane.

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14
Q

What types of molecules typically bind intracellular receptors?

A

Small, hydrophobic molecules like steroid hormones.

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15
Q

List the main classes of membrane receptors.

A

Ion channel receptors, protein kinase receptors, G protein-coupled receptors.

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16
Q

How do ligand-gated ion channels work?

A

Ligand binding causes the channel protein to change shape, opening the channel and allowing ions to pass.

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17
Q

What is a kinase?

A

An enzyme that adds a phosphate group (phosphorylates) itself or another protein.

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18
Q

How does the insulin receptor function?

A

It acts as a protein kinase receptor, phosphorylating itself and cytoplasmic targets when insulin binds.

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19
Q

What is a G protein-coupled receptor (GPCR)?

A

A membrane receptor that activates a G protein when ligand binds, initiating a downstream signaling cascade.

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20
Q

Describe the basic G protein signaling cycle.

A

Ligand binding → receptor activates G protein (GDP → GTP) → G protein activates effector → cellular response.

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21
Q

What is a second messenger?

A

A small molecule that mediates and amplifies a signal inside the cell (e.g., cAMP, IP$_3$, Ca$^{2+}$).

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22
Q

How is cAMP produced?

A

ATP is converted into cAMP by adenylyl cyclase.

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23
Q

What is the function of protein phosphorylation in signal transduction?

A

It can activate or inhibit proteins, often amplifying the cellular response.

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24
Q

Why does signal amplification occur in most signaling pathways?

A

One signal molecule can activate multiple intermediates, increasing the response magnitude.

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25
How do cells terminate signals?
Enzymes degrade second messengers or dephosphorylate proteins to shut off signaling.
26
What is feedback inhibition in enzyme regulation?
When the product of a pathway inhibits an early enzyme, preventing overproduction.
27
What are gap junctions?
Specialized intercellular connections in animals that allow direct passage of ions and small molecules.
28
What are plasmodesmata?
Plant cell structures that connect cytoplasm of adjacent cells, allowing molecules to pass.
29
Give an example of hormone signaling specificity.
Only cells with an adrenaline receptor respond to adrenaline.
30
What is signal crosstalk?
Interaction between different signaling pathways, allowing integration of multiple signals.
31
State the first law of thermodynamics.
Energy cannot be created or destroyed, only transformed.
32
State the second law of thermodynamics.
Every energy transfer increases the entropy (disorder) of the universe.
33
What is free energy ($$G$$)?
The portion of a system’s energy that is available to do work.
34
What does a negative $$\Delta G$$ mean?
The reaction is exergonic and releases energy.
35
What does a positive $$\Delta G$$ indicate?
The reaction is endergonic and requires energy input.
36
What is meant by coupling reactions?
Exergonic reactions drive endergonic reactions, often via ATP hydrolysis.
37
Where is potential energy stored in molecules?
In chemical bonds.
38
What is ATP?
Adenosine triphosphate, the primary energy currency in cells.
39
What makes ATP a high-energy molecule?
Its three phosphate groups are negatively charged and repel each other, so breaking a phosphate bond releases energy.
40
What is enzyme specificity?
Each enzyme catalyzes a specific reaction due to its unique active site shape.
41
What is activation energy?
The energy required to start a chemical reaction.
42
How do enzymes increase reaction rates?
By lowering the activation energy.
43
What is an enzyme’s active site?
The region where the substrate binds and catalysis occurs.
44
What is an induced fit in enzyme action?
The enzyme changes shape slightly to fit the substrate perfectly during binding.
45
What is a cofactor?
An inorganic ion (like Mg$^{2+}$ or Zn$^{2+}$) required for enzyme activity.
46
What is a coenzyme?
An organic molecule, often derived from vitamins, that helps enzymes catalyze reactions.
47
What is competitive inhibition?
An inhibitor molecule binds to an enzyme’s active site, blocking substrate access.
48
What is noncompetitive (allosteric) inhibition?
An inhibitor binds to a site other than the active site, altering the enzyme’s shape and activity.
49
What is feedback inhibition?
The end product of a metabolic pathway inhibits an upstream enzyme to prevent excess accumulation.
50
What is the effect of temperature on enzyme activity?
Activity increases with temperature to an optimum, then decreases due to denaturation.
51
Why does pH influence enzyme activity?
Changes in pH can alter enzyme shape, especially the active site.
52
What is a metabolic pathway?
A series of enzyme-catalyzed reactions in which the product of one reaction is the substrate for the next.
53
What is catabolism?
The breakdown of molecules to release energy.
54
What is anabolism?
The synthesis of larger molecules from smaller ones, using energy.
55
Give two examples of anabolic and catabolic reactions.
Anabolic: protein synthesis, DNA replication. Catabolic: glycolysis, fatty acid oxidation.
56
What is the main substrate for cellular respiration?
Glucose.
57
Write the overall equation for aerobic cellular respiration.
$$ \text{C}_6\text{H}_{12}\text{O}_6 + 6\text{O}_2 \rightarrow 6\text{CO}_2 + 6\text{H}_2\text{O} + \text{energy} $$
58
What happens in glycolysis?
Glucose is split into two molecules of pyruvate in the cytoplasm.
59
How much net ATP is produced by glycolysis per glucose?
2 ATP (net yield).
60
What is NAD$^+$, and what does it do in respiration?
An electron carrier; it picks up electrons during glycolysis and the citric acid cycle, becoming NADH.
61
Where does pyruvate oxidation take place?
In the mitochondrial matrix.
62
What is acetyl-CoA?
The two-carbon molecule formed from pyruvate that enters the citric acid cycle.
63
What are the outputs of the citric acid cycle (per turn)?
3 NADH, 1 FADH$_2$, 1 ATP (or GTP), 2 CO$_2$.
64
How many turns of the citric acid cycle per glucose?
Two (one for each acetyl-CoA).
65
Describe oxidative phosphorylation.
The process where electrons from NADH and FADH$_2$ pass through the electron transport chain, creating a proton gradient used to make ATP.
66
What is the final electron acceptor in the electron transport chain?
Oxygen (O$_2$).
67
What enzyme makes ATP from the proton gradient in mitochondria?
ATP synthase.
68
What is chemiosmosis?
The movement of protons down their gradient through ATP synthase, producing ATP.
69
How many ATP are made by complete aerobic respiration (max per glucose)?
About 32 ATP.
70
What is fermentation?
Anaerobic breakdown of glucose producing ATP and either lactic acid or ethanol.
71
Why does fermentation regenerate NAD$^+$?
To allow glycolysis to continue without oxygen.
72
What is lactic acid fermentation?
Pyruvate is converted to lactate, regenerating NAD$^+$.
73
What organisms perform alcoholic fermentation?
Yeasts and some plant cells.
74
What are the products of alcoholic fermentation?
Ethanol, CO$_2$, NAD$^+$.
75
What is beta-oxidation?
The process by which fatty acids are broken down into acetyl-CoA.
76
Give one way metabolism is highly integrated.
Intermediates from glycolysis or the citric acid cycle can be used to build amino acids, nucleotides, or lipids.
77
What is an electron transport chain?
A series of proteins in the mitochondrial inner membrane that transfer electrons and pump protons.
78
What is the overall equation for photosynthesis?
$$ 6\text{CO}_2 + 12\text{H}_2\text{O} + \text{light} \rightarrow \text{C}_6\text{H}_{12}\text{O}_6 + 6\text{O}_2 + 6\text{H}_2\text{O} $$
79
Where do the light reactions of photosynthesis take place?
In the thylakoid membranes of chloroplasts.
80
What is the main pigment in photosynthesis?
Chlorophyll a.
81
Name the two major photosystems in the light reactions.
Photosystem I (PSI) and Photosystem II (PSII).
82
What is photolysis?
The splitting of water in PSII, producing electrons, protons, and oxygen.
83
What is chemiosmotic phosphorylation (photophosphorylation)?
Making ATP using a proton gradient established by the light reactions.
84
What are the products of the light reactions?
ATP, NADPH, and O$_2$.
85
Where does the Calvin cycle take place?
In the stroma of the chloroplast.
86
What enzyme fixes CO$_2$ in the Calvin cycle?
Rubisco.
87
What is the first stable product of the Calvin cycle?
3-phosphoglycerate (3PG).
88
What three phases occur in the Calvin cycle?
Carbon fixation, reduction, and regeneration of RuBP.
89
What molecule provides reducing power in the Calvin cycle?
NADPH.
90
How is ATP used in photosynthesis?
To provide energy for the reduction of 3PG and regeneration of RuBP.
91
What is photorespiration?
A process where rubisco reacts with O$_2$ instead of CO$_2$, wasting energy and releasing CO$_2$.
92
What plant adapted pathway avoids photorespiration?
The C$_4$ pathway.
93
Describe the C$_4$ pathway in short.
CO$_2$ is initially fixed into a 4-carbon molecule in mesophyll cells before reaching the Calvin cycle.
94
What is CAM photosynthesis?
A process by which stomata open at night, storing CO$_2$ as malate for use during the day.
95
What wavelength of light does chlorophyll absorb most strongly?
Red and blue wavelengths.
96
What is the 4$ pathway in short?
CO$_2$ is initially fixed into a 4-carbon molecule in mesophyll cells before reaching the Calvin cycle.
97
What key adaptation allows CAM and C$_4$ plants to thrive in hot, arid environments?
They minimize photorespiration and maximize water use efficiency.
98
What happens to G3P produced by the Calvin cycle?
It can be used to synthesize glucose, starch, or sucrose, or enter glycolysis.
99
In plants, what is the purpose of starch?
Long-term energy storage.
100
How is photosynthesis linked to cellular respiration?
The glucose formed by photosynthesis can be broken down by respiration to make ATP.
101
Why is photosynthesis critical to life on Earth?
It provides both the energy and the organic molecules necessary for nearly all life forms.