Topic 2 Microbiology - Virology and Viral Infection Flashcards

1
Q

What are characteristics of viruses?

A

Viruses lack independent metabolism

Need a host to replicate

cannot regulate internal conditions (no organelles)

wide range of organisms infected by viruses

cannot react to external factors

Do not grow, produced fully formed

Very small in size - typically 20-300 nm

Generally, very small genomes

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2
Q

What are characteristics of a viruses life?

A

Homeostasis - regulation of the internal environment e.g. sweating to reduce temperature

Organisation - being structurally composed of one or more cells

metabolism

growth

adaptation

response to stimuli

reproduction

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3
Q

Different viruses have different genetic materials. What are these genome compositions?

A

Some double stranded DNA

Some double stranded RNA

Some single stranded DNA

Some single stranded RNA

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4
Q

Describe a viruses structure?

A

The genetic material is within the virus

There is a protein coat around the genetic material. Protein coat is protecting the genetic material

Generally, an outer lipid membrane as well

The energy required for replication comes from the host

The viral particles tend to be highly symmetrical in appearance

The virus has some genes-often required for own replication e.g. reverse transcriptase

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5
Q

Why do viruses have a very limited range of host organisms (often only one)?

A

Due to the small number of genes present in a virus

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6
Q

What does a limited number of genes in a virus reduce potential for?

A

reduces potential for diversity and therefore a mutation is required to jump species barrier

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7
Q

What are some examples of viral infection routes?

A

Aerosols e.g. measles

Faecal-oral e.g. GI tract viruses (Norovirus)

Direct contact e.g. sexually transmitted (HIV)

Via Blood e.g. rabies, hepatitis B

Insect Bites e.g. Dengue fever

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8
Q

What are some viral infection factors?

A

In addition to ensuring correct infection mechanism, other factors may also be important:

Temperature range

Humidity levels

sunlight (UV) levels

Host specific-microbiome, genetic factors, co-morbidities, immune system

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9
Q

What needs to happen for a successful infection to occur?

A

there needs to be contact initiated between the host and the viral particle.
Therefore there is the initial contact, but then it must be followed by the interaction.
If for some reason the hosts surface has changed, then recognition might not take place. If recognition does not take place, then infection will fail.

The contact must also be with the correct type of tissue e.g. Influenza A virus needs epithelial tissue

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10
Q

Describe virus infection events

A
  1. Once contact has been made with the cell, the virus becomes engulfed by the cell.
  2. The viral coat (capsid) is removed
  3. The genome can then be transported to the nucleus in the case of DNA viruses, however, for RNA viruses this may have to have a reverse transcription step before being moved to the nucleus for replication
  4. Any expression of viral genes can now take place. This will often include expression of the genes responsible for producing the capsid of the virus
  5. Replication of the viral genome. This will all result in new viral particles being produced. In some cases these may be budded out of the host cell - and so will not be fatal to the cell. In other cases the replication of the viral particle is accompanied by cell lysis (a method in which the outer boundary or cell membrane is broken down or destroyed in order to release inter-cellular materials such as DNA, RNA, protein or organelles from a cell?), with the virus killing its host cell
  6. Release of viral genome from nucleus
  7. Coating of viral genome to form new mature virus
  8. Release of viral particle (killing cell????)
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11
Q

What is taxonomy?

A

Taxonomy involves the identification and naming of organisms and their classifications into groups based on shared characteristics

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12
Q

What is Human Cytomegalovirus (HCMV)

A

HCMV is classified within the herpesviridae group (Herpesvirus 5)
It is a double stranded DNA virus

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13
Q

How is HCMV transmitted?

A

The precise mode of transmission is unclear, but it is thought to be passed on through bodily fluids. it is believed to be most commonly spread by kissing or sexual activity, but also appears to be spread via tears, urine, blood and saliva.

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14
Q

HCMV is not tissue specific, but what tissues does it mainly affect?

A

Most tissues can be infected, but mainly salivary glands and leucocytes.(white blood cells???)

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15
Q

What problems can HCMV cause for immunocompromised individuals?

A

Colitis (inflammation in your colon?)

Increased susceptibility to other symptoms

In neonates (newborns) there can be congenital abnormalities following exposure to the virus

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16
Q

What are the treatments for HCMV?

A

No vaccine is available

Antiviral treatments exist. Generally uses Gancicovir

Ganciclovir is a synthetic analogue of 2′-deoxy-guanosine and so as ganciclovir triphosphate it is a competitive inhibitor of deoxyguanosine triphosphate (dGTP) incorporation into DNA. While this could pose problems for the host’s own DNA replication, it actually preferentially inhibits the viral DNA polymerases more than cellular DNA polymerases and so preferentially prevents replication of the viral DNA.

17
Q

What are some examples of cancer-associated viruses?

A

Epstein-Barr Virus (EBV) -nasopharyngeal carcinoma

Hepatitis B (Hep B)-hepatocellular carcinoma

Hepatitis C (Hep C)-hepatocellular carcinoma

Human Papillomavirus (HPV)-cervical cancer

Herpes virus-Kaposi’s sarcoma

Human T-lymphotropic virus Type 1 (HTLV-1)-adult T cell leukaemia

Merkel cell polyomavirus (MCPyV)-Merkel cell carcinoma (skin)

18
Q

How is the Zika virus (ZVD) transmitted?

A

Transmitted through mosquitoes in the genus Aedes

19
Q

What does the ZVD cause?

A

Typically causes mild fever, rash, conjunctivitis which last around 2-7 days

Neonatal malformation with small head size
Babies may develop epilepsy, learning disabilities, hearing problems, vision problems
Many will develop normally

20
Q

What is ZVD an example of?

A

This is an example of a positive sense RNA virus, and after infection it has to be able to make a double-stranded RNA version of its genome

21
Q

The Aedes aegypti (mosquito) is known to spread ZVD, what else is it also involved in spreading?

A

Dengue fever

Chikungunya

Mayaro virus

Yellow fever virus

22
Q

What treatments are there for ZVD (zika virus)?

A

No vaccine available

No specific treatment

Best way to avoid ZVD is to avoid being bitten

Found in many tropical/sub-tropical areas

23
Q

What are characteristics of Corona virus?

A

RNA virus

Infect mammals and birds

Cause respiratory problems

Some very mild, others more severe

Long-term effects unknown

They have a positive-sense, single-stranded RNA genome. They are typically in the range of 50-200 nm (approximate mean size = 120 nm) with a genome size of around 30,000 nucleotides. There are several different types of coronaviruses and they are able to infect both birds and mammals. Some are specific to a single species, while others can infect a number of species. Infections vary in terms of severity and affect the respiratory tract, and in some other cases other systems as well.

24
Q

What does the H and N stand for in H1N1 and what do they do?

A

H = Haemagglutinin - helps with initial attachment

N = Neuraminidase - Helps with release of new virus particles

25
Q

What is H1N1?

A

Influenza Virus?

26
Q

What family is H1N1 a member of?

A

Orthomyxoviridae Family

27
Q

What are the 3 species of human influenza virus?

A

Influenza; A, B and C

28
Q

How is influenza (H1N1) transmitted?

A

Transmission is airborne from person to person via aerosols

29
Q

H1N1 is a single stranded RNA virus. Which strand does it use to infect?

A

Uses the negative strand

30
Q

What are some characteristics of the flu/influenza virus?

A

Flu viral particles are spherical

Approx 100 nm diameter

31
Q

What does the influenza virus infect?

A

Infects mucous membranes of respiratory tract

32
Q

What are symptoms of the influenza virus?

A

symptoms appear about 1-4 days after inhaling infected droplet.

Cough and sore throat

low grade fever 2-7 days

chills, fatigue, headache, general aching

around 20-30% of infected individuals remain asymptomatic but act as disease reservoirs

33
Q

How is influenza treated?

A

Rimantidine - Rimantidine is a drug which can b Tamiflu is also used as a treatment for flu. This contains the prodrug oseltamivir phosphate. This needs to be converted to the active form before it is effective. In the liver oseltamivir is hydrolysed to the active free carboxylate form which then functions as a neuraminidase inhibitor (NI). By inhibiting neuraminidase the drug is able to prevent release of viral particles from infected cells. e used for treatment of flu. It blocks the M2 proton channel and leads to incomplete coating of the virus, meaning that the infection process becomes incomplete.)

Tamiflu

34
Q

Describe vaccination of influenza

A

vaccination as complicated as influenza is genetically fluid

Many viruses have a high level of mutations taking place in them. This “genetic fluidity” makes it a challenge to produce reliable vaccines as the proteins changed include those on the viral surface.

35
Q

What two factors contribute to genetic variations? and what do they involve?

A

Drift and shift

Drift involves small mutations e.g. point mutations - not normally a problem

Antigenic shift is when two or more strains recombine genes - problem for immune system as these are effectively new

36
Q

How are outbreaks controlled?

A
  1. Isolation and quarantine
  2. Treatment and vaccination
  3. Public health interventions
  4. Health education and communication
  5. Enhanced surveillance
  6. Environmental alterations