TS6 - Nervous System Flashcards

(57 cards)

1
Q

How do we know that cones are less sensitive, but much faster than rods?

A

Comparing responses to light flashes in single rods or cones revealed cones are much less sensitive than rods.

Cones also recover faster than rods and produce an ‘undershoot’ recovery phase.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

How do cGMP/GMP concentrations control membrane potential? How was this discovered?

A

The reduction in cGMP concentration causes closure of the cGMP-gated ion channels in the plasma membrane and the hyperpolarization of the cell.

Discovered using patch-clamp to change the levels of cGMP and monitor channel conductance, as well as cloning of the gene encoding the gated channel (CNG channel).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What disorder is associated with perturbations of latrophilin expression?

A

ADHD symptoms were shown in a mouse model when latrophilin-3 was knocked out.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

How did cloning of the cone opsin genes reveal the molecular basis of human color blindness?

A

Cloning showed that M- and L-opsins are 96% identical, while S-opsin is only ~40% identical.

Due to the M and L genes being quite new from a gene duplication event, recombination is highly common. Recombination between L- and M-opsin genes at meiosis leads to gene arrangements that produce variant color vision. E.g., unequal crossing over. The M- and L-opsin genes map next to each other on the X chromosomes, hence the predominance of color blindness in males.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

How is neuronal migration regulated by FLRT? What four experiments have aided in uncovering this?

A

FLRTs play important roles in regulating the timing of neuronal migration.

  1. Stripe assays have shown that Unc5 forms a repulsive interaction with FLRT, whilst latrophilin has an adhesive interaction.
  2. Point mutations were then used with structure-based protein engineering, such that mutant FLRT could no longer bind Unc5. This stops the repulsive signal, showing that FLRT signals through Unc5 receptors.
  3. Structural biology was also used to show that FLRT and Unc5 form a ternary complex with Latrophilin, due to Unc5 and Latrophilin having different binding sites on FLRT. XRC showed they form a 2:2:4 super-complex.

The ability to form different complexes allows for different functions as the neuron migrates.

  1. RNA hybridization assays showed that as neurons migrate, there’s different expression levels of the receptors, implying each complex only has functions as certain stages of migration to aid navigation.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Why was it thought that teneurins in the brain contain toxins?

Why do we have this protein in our brain?

A

Teneurins are related to TcB/C toxins, and teneurins contain the toxin-domain that is normally located within the barrel structure. But, in teneurins it’s outside and is hence dysfunctional…

Knock-outs in C.elegans showed loss of teneurin leads to defects in development, suggesting it plays a role in cellular interactions with the ECM and cell guidance.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

How does high-acuity and color vision work?

A

Cones are highly concentrated in the fovea at the center of the primate retina, hence why color can be seen best at the center of the visual field and not well at the peripheries.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Describe the structure and function of CNG channels.

A

Its primary structure resembles that of K+ channels, with 6 TM domains and a pore loop between S5 and S6.

Like K+ channels, functional CNG channels comprise 4 subunits with 4 cGMP binding sites.

Its opening is non-selective (like nicotinic ACh receptors), but due to its reversal potential, Na+ influx exceeds K+ efflux. Hence, the net effect is depolarization when cGMP is bound.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

What is the function of microglia?

A

Immune cells that engulf damaged cells and debris upon activation by injury and during developmental remodeling.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What is the function of astrocytes in postmitotic neuron differentiation?

A

Facilitate synapse formation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Why are teneurins so unusual in terms of their structure?

A

They are highly intricate for cell guidance receptors, which a strange knot structure that requires a lot of effort to synthesize.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What is the FLRT-Unc5-Latrophilin supercomplex, and how was it studied?

What did these studies reveal about the supercomplex?

A

The interaction of FLRTs with Unc5 and LPHN has been shown to promote the repulsion of axons from regions of the developing nervous system that are rich in these proteins.

Multi-angle light scattering (MALS) and NMS was used to study to determine oligomer states of the complex, showing that not all homologues form this super-complex.

This means that the receptors can form higher order complexes (not just 1:1 interactions) and the same protein can engage in different complexes with different functions.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

How does lateral inhibition from horizontal cells construct the center-surround receptive fields?

A

Horizontal cells receive input from multiple photoreceptors.

They provide inhibitory feedback to neighbouring photoreceptors and bipolar cells.

Light stimulation of a central photoreceptor activates horizontal cells.

These inhibit surrounding photoreceptors, reducing their signal transmission.

This enhances contrast between centre and surround, forming an excitatory centre and inhibitory surround receptive field.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

How did teneurins evolve? How do we know this?

A

Horizontal gene transfer during early metazoan evolution.

Half of the gene sequence is related to bacterial toxin proteins whilst the other half is a typical cell guidance receptor.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is the amyloid-beta hypothesis of Alzheimer’s disease?

A

According to the hypothesis, beta-amyloid protein is produced naturally in the brain, but in Alzheimer’s disease, it accumulates and forms clumps, called plaques, outside and around nerve cells. These plaques can disrupt communication between nerve cells and lead to inflammation, oxidative stress, and cell death, contributing to the progressive loss of cognitive function and memory that are characteristic of Alzheimer’s disease.

The amyloid-beta hypothesis suggests that reducing the levels of beta-amyloid protein in the brain could prevent or slow the progression of Alzheimer’s disease.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

How do we test whether a protein elicits attractive, adhesive or repulsive responses?

A

The confrontation assay (time-consuming and difficult to quantify)

Stripe assay

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What is the function of oligodendrocytes in postmitotic neuron differentiation?

A

Myelinate axons.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

Describe the transduction cascade involved in photon absorption within rod cells. How is the signal amplified?

A
  1. Light triggers the isomerization of retinal that causes a conformational change in opsin.
  2. Transducin is then able to bind opsin and become activated.
  3. Activated transducin catalyzes the exchange of GDP for GTP, releasing the alpha subunit.
  4. Alpha-GTP activates phosphodiesterase by sequestering the inhibitory subunits.
  5. PDE hydrolyzes cGMP to GMP.
  6. Low cGMP levels result in CNG channel closure, hyperpolarization of the cell, and a decline in glutamate release.
  7. System reset.

Amplification occurs through 1 rhodopsin activating >20 transducin molecules, each of which can activate PDE.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

What are the 2 types of bipolar cells, and how do they respond to glutamate signaling from cones?

A

There are two major subclasses of bipolar cells, OFF bipolar and ON bipolar.

The hyperpolarization of cones by light results in less glutamate release.

OFF bipolar cells have iGluRs, which become less active due to the reduction in glutamate. This means fewer cations enter the cell and the OFF cell is hyperpolarized.

ON cells have mGluRs that also become less active. This means the inhibitory G proteins are less active and the cation channels are less inhibited, resulting in depolarization of the cell.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

Describe the type of vision given by the two types of photoreceptors and where they can be found.

A

Cones are responsible for high acuity, daylight and colour vision; in primates, cones are concentrated in the fovea, the central part of the retina.

Rods are more numerous, more sensitive to photons, and specialized for night vision.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

What is an axon growth cone?

A

The axon growth cone is a highly dynamic structure that contains a complex network of cytoskeletal filaments, including microtubules and actin filaments.

The growth cone is responsible for guiding the developing axon to its target cell or destination during neural development.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

What are the four ‘classical’ axon guidance systems?

A

Slits (bind Robo receptors)
Netrins (bind DCC and Unc5 receptors)
Ephrins (bind Eph receptors)
Semaphorins (bind Plexins)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

Describe the structure of vertebrate retina.

A

The vertebrate retina is a layered structure made of 5 classes of neurons.

The input layer at the back of the retina consists of photoreceptors that detect photons and convert them to electrical signals.

The output layer comprises retinal ganglion cells, which transmit information from the eye to the brain, making up the optic nerve.

In between are bipolar cells and amacrine cells, whose actions influence the signals transmitted from photoreceptors to bipolar cells and then to RGCs.

Pigment cells at the back of the eye absorb extra photons and prevent light scattering.

24
Q

Describe the structure and function of rhodopsin.

How does the structure of the subunits relate to its function?

A

Rhodopsins are the photosensitive molecules in rods.

Each rhodopsin consists of an opsin GPCR protein and a small molecule of retinal that’s covalently attached to a lysine residue in the opsin.

Retinal is the chromophore that exists in two isomers. Photon absorption causes a switch of 11-cis retinal to all-trans retinal, triggering a conformational change in the opsin.

This change opens up a binding site for a heterotrimeric G protein, transducin.

25
How does Ephrin and Eph receptors contribute to the targeting of retinal ganglion cell axons?
Nasal axon --> posterior tectum Temporal axon --> anterior tectum There exists a high concentration of EphA3 expression in temporal axons, and a low concentration in nasal axons. There also exists a high ephrin-A5 concentration in the posterior tectum, and a low concentration in the anterior tectum. The more EphA3 expressed by a given axon, the more it's repelled by ephrinA5. Hence temporal axons will express a high concentration of ephA3, directing them to the low concentration of ephrinA5 in the anterior tectum. The reverse is true of nasal axons, which express low amounts of ephA3.
26
What experiments led to the mechanisms that underlie predetermined axonal target selection? What hypothesis did this lead to?
Sperry and colleagues collected information on how regenerating RGC axons grow into a structure called the tectum, the major target of RGCs in the brain of lower vertebrates, equivalent to the mammalian superior colliculus. E.g., they transected the optic nerve, ablated half of all RGCs, and then examined the axon terminations of the remaining RGCs in the tectum. These experiments allowed them to determine which parts of the retina connected to which parts of the tectum: - Ventral RGCs project to the medial half of the tectum. - Dorsal RGCs project to the lateral half of the tectum. - Anterior RGCs (also called nasal RGCs because they’re close to the nose) project to the posterior tectum. - Posterior RGCs (also called temporal RGCs because they’re close to the temple) project to the anterior tectum . Thus, the point-to-point retinotopic map between the retina and the tectum is enabled by the orderly projections of RGC axons. These observations provided conclusive evidence that RGC axons are predetermined to connect with specific targets in the brain following regeneration. This led to the chemoaffinity hypothesis.
27
How are signals from rods and cones analyzed in the retina? Include information on the center-surround receptive fields analysis experiment.
Many more photoreceptors than retinal ganglion cells (RGCs) → signals are condensed. Each RGC integrates input from ~100 photoreceptors. RGCs perform local analysis to retain key visual information, not just average input. Experiment: light stimulus moved across retina to test individual RGC responses. ON-centre/OFF-surround RGCs: Strong firing when centre is illuminated. Firing decreases as more of the surround is illuminated. Illumination of only the surround suppresses firing. OFF-centre/ON-surround RGCs: Strongest response when surround is illuminated, not the centre.
28
What can Latrophilin, FLRT, and Unc5 bind to? Why is having so many interaction partners important?
Latrophilin: FLRT and Teneurin FLRT: Latrophilin and Unc5 Unc5: FLRT and GPC3 Receptors form different complexes, depending on which binding partners are available. This combinatorial code enables relatively few receptors to elicit many different, nuanced cell responses.
29
What are the 3 types of cone cells in humans, and why are they needed? How do they detect different wavelengths?
S-cone M-cone L-cone The presence of all 3 cones is necessary for humans to perceive a full range of colors and to have high-acuity vision. Different cones express different opsins, allowing them to recognize different wavelengths.
30
What are the 4 methods of axon guidance? Give an example protein for each.
1. Long-range chemoattraction 2. Long-range chemorepulsion [ligand is soluble] e.g., DCC/netrin and Robo/Slit 3. Contact-mediated chemoattraction 4. Contact-mediated chemorepulsion [ligand is cell-bound] e.g., Eph/ephrin and Unc5/FLRT
31
How are nanobodies being used to study neuronal receptor interactions?
Nanobodies are derived from single-chain camel antibodies, and these are being used to interfere with specific protein binding surfaces, hence weakening receptor interactions. It's harder to find those that stabilize these interactions, but not impossible, and so these can be used to enhance the receptor interactions.
32
How did electrophysiological studies confirm the single-photon response of rods?
A single rod was sucked into an electrode to form a tight seal. Electric current passing through ion channels in the plasma membrane of the segment within the electrode could be measured in response to a light beam. By systematically reducing the light intensity, a condition was reached in which most light flashes didn't produce any response. The occasional responses that did occur has a uniform size, and was fitted to a Poisson distribution, showing that the responses were mostly caused by absorption of single photons and occasionally 2 photons. These measurements confirmed that photon absorption results in hyperpolarization of rods - that is, current flows out of the rod in response to light. Each photon absorption results in ~1pA of net outward current, equivalent to blocking 10^7 position ions that would otherwise flow into the cell....
33
Describe Sperry's optic nerve regeneration experiment, and explain what it revealed.
Amphibians are able to regenerate their retinal ganglion cells. The left eye was rotated 180 degrees, followed by severing of the optic nerve. After allowing time for regeneration, he used behavioural experiments to test what the newt saw. Sperry observed that when food was presented at the surface of the water tank, above the newt's head, the newt would swim downward and bump into the bottom of the tank. This strongly suggested that RGC axons carry specific information corresponding to their original position in the eye, and that the brain contains information corresponding to these positions.
34
What did stripe assay experiments reveal about temporal retinal ganglion cell axons?
They preferred to grow on membranes prepared from the anterior tectum, avoiding those from the posterior tectum. This suggested a repellant present in the posterior tectum membranes, shown to be ephrin.
35
State the procedure involved in a stripe assay.
1. The protein under investigation and a neutral protein are immobilized on a culture dish in an alternating stripe pattern. 2. Cells are seeded on these stripes. In control experiments, both stripes contain neutral protein only.
36
A single gradient of Ephrin is insufficient to specify an axis, so how else do retinal ganglion cells know where to project?
1. Competition for space Temporal RGC axons occupy space in the anterior side, making it easier for other axons to grow to the posterior end. 2. Chemoaffinities Whilst RGCs express EphA receptors, they can also express ephrin to create another gradient. Their target tissues do the same. Ephrins also trigger signaling cascades when they bind Eph receptors, leading to cell repulsion. This is known as reverse signaling.
37
What is the molecular nature of neurofibrillary tangles and amyloid plaques?
The neurofibrillary tangles consist of abnormal aggregates of hyperphosphorylated microtubule-binding protein tau. Amyloid plaques consist mostly of a 39- to 43-amino acid peptide called amyloid beta protein for its strong tendency to form aggregated of beta-pleated sheets. While neurofibrillary tangles have also been found in other neurodegenerative diseases, collectively called tauopathies, amyloid plaques are most characteristic of AD.
38
What is the chemoaffinity hypothesis? What are the caveats of this hypothesis, and how are they overcome?
This hypothesis proposes that axons and their target cells are pre-specified for one another and that this pre-specification is based on the expression of specific molecular markers, or "labels," on the surface of cells. According to the chemoaffinity hypothesis, these molecular labels are responsible for guiding axons to their appropriate targets during development. There aren't enough genes in the genome to provide individual 'tags' for each neuron, so this is overcome by combinatorial interaction codes and the use of gradients.
39
Compare the olfactory system to retinal circuits.
Similarities: - Use of sensory receptors to detect environmental stimuli - Generation of electrical signals in response to sensory input - Transmission of electrical signals to higher brain regions for processing and interpretation Differences: - ORNs express one type of receptor; there are only 3 types of cone cells, and rods. - Olfaction uses a combinatorial code; retinal circuits use spatial codes
40
How are cortical layers formed?
1. At early embryonic stages, neural progenitors in the ventricular zone (VZ) divide symmetrically, expanding the progenitor pool 2. At later stages, they become radial glia. 3. Neurons produced from radial glia cells via asymmetric division are the first to initiate and complete migration, settling in the deepest layer. 4. Each time a neuron is 'born', they attach to the radial glia cell and migrate upwards towards the cortical plate
41
How do Eph receptors amplify their signals?
Eph receptors make large clusters where they autophosphorylate one another, such that a receptor that isn’t bound can still be activated by a bound receptor. This causes a huge cascade of signals, including provoking changes in the cytoskeleton that changes the cytoskeleton for migration.
42
What are teneurins? What is characteristic of their structure?
Teneurins are a family of transmembrane proteins that are involved in a wide range of developmental and physiological processes in both vertebrates and invertebrates. They are characterized by a unique domain structure consisting of 8 EGF-like repeats, followed by a series of TM domains and a cytoplasmic tail. Teneurins were first identified as regulators of axon guidance and neuronal connectivity during embryonic development.
43
Describe the process of recovery in rod cells after the phototransduction cascade.
1. The closure of CNG channels reduces [calcium], which causes GCAP to activate guanylate cyclase, leading to increased cGMP production. 2. cGMP binding to CNG channels leads to channel opening and membrane depolarization. FEEDBACK LOOP. 3. RGS9 (GAP protein for transducin) facilitates hydrolysis of alpha-GTP, thereby deactivating PDE. 4. Rhodopsin kinase specifically phosphorylates rhodopsin. Phosphorylated rhodopsin recruits binding of arrestin, deactivating rhodopsin.
44
Describe the functions of Slit, Robo and Comm in midline crossing. How do these control axonal crossing of the midline?
Slit is a secreted protein produced by midline glia that acts as a repulsive axon guidance ligand. Robo is a receptor for slit on the axon growth cone. Comm acts in the secretory pathway to downregulate cell-surface expression of Robo. 1. Comm prevents Robo from being on the cell surface, enabling axons to cross the midline. 2. After midline crossing, downregulation of Comm results in upregulation of Robo, preventing axons from recrossing the midline because of Slit repulsion.
45
How are the 5 different tastants (sweet, umami, salty, sour, and bitter) sensed?
Sweet and umami are sensed by heterodimers of the T1R family of GPCRs. Umami has T1R1 and T1R3, whilst sweet has T1R2 and T1R3. Bitter is sensed by T2R GPCRs, and these come in more varieties than sweet and umami receptors. They also have higher affinities for ligands, allowing for identification of toxic molecules. Sour and salty involves specific ion channels, but their overall mechanism is less well understood.
46
What is Weber's law? How does this relate to light adaptation of rods?
The 'just-noticeable' difference between two stimuli is proportional to the magnitude of the stimulus. In the visual system, this means that photoreceptors become less sensitive to the same intensity of stimulation when the background illumination is higher. In other words, to achieve the same amount of hyperpolarization at higher background illumination, a stronger stimulus is required.
47
How is inward flow of current (depolarization) blocked in rod cells?
When light is absorbed by the photopigment molecule, rhodopsin, in the outer segment of the rod cell, it initiates a series of biochemical events that ultimately lead to the closure of ion channels in the outer segment membrane and the reduction of the intracellular concentration of cyclic guanosine monophosphate (cGMP). The reduction in cGMP concentration causes the cGMP-PDE complex to become activated, which breaks down cGMP into GMP. As a result, the concentration of cGMP in the cell decreases, leading to the closure of the cGMP-gated ion channels in the plasma membrane and the hyperpolarization of the cell.
48
What are tauopathies?
neurodegenerative disorders characterized by deposition of abnormal tau protein in the brain.
49
How did psychophysical studies reveal that human rods can detect single photons?
A person in a dark room received a flash of light with varying numbers of photons. The flashes 'seen' were plotted over the average number of photons used, taking into account the probability of photons hitting the retina. For these psychometric functions, a best fit for n was found to be between 5 and 7 photons. Thus, to reliably perceive a flash of light, an average of 5-7 independent photon absorptions must occur in a retinal field of ~500 rods. Since the probability of 2 photons being absorbed by the same rod under these conditions is small, each rod must be able to report the absorption of a single photon.
50
How did forward genetics give insights into axon guidance for crossing the midline?
Drosophila mutants were identified that, when stained with an antibody that recognizes all axons, showed interesting phenotypes: - Slit mutants showed axon collapse at the midline - Roundabout (Robo) mutants showed neurons crossing the midline multiple times - Comm mutants showed no axons crossing the midline Forward genetics was then used to take these mutants and find the proteins responsible for these phenotypes, as well as how they regulate midline crossing.
51
How does the light adaptation of rods work at the molecular level?
High levels of background illumination cause some cGMP-gated channels to close, resulting in a decline in [calcium]i. This decline leads to the following biochemical changes: 1. The basal level of GC activity increases because of the action of GCAP (cGMP increases). 2. Activated rhodopsin phosphorylation increases because it’s normally inhibited by high [calcium]I, which leads to more arrestin binding that competes with R* binding with transducin-alpha. These changes make phototransduction less efficient, and thus stronger activation of PDE by more light is required to promote effective hyperpolarization. NB: these events occur in the outer segment of the photoreceptor, so [calcium]i changes don’t complicate its role in regulating synaptic transmission, which occurs in axon terminals at the opposite end of the photoreceptor.
52
What is synaptic pruning and why is it important?
Synaptic pruning is the process of eliminating weak or unnecessary neural connections in the brain. It is a natural and important process that occurs during brain development, particularly during childhood and adolescence. Synaptic pruning has been linked to a variety of neurological and psychiatric disorders, including autism, schizophrenia, and depression. These conditions are thought to be associated with abnormalities in synaptic pruning, which can lead to the development of dysfunctional neural circuits.
53
What model organism is used to model the evolution of cell-cell adhesion and communication? Why?
Choanoflagellates. - Some are single-celled; some form colonies - Allow for inferences about the genome and cell biology of unicellular progenitors of Metazoa. - Express adhesion proteins, suggesting formation of multicellular interactions - Lots of neuronal proteins found in these species e.g., VG calcium and sodium channels.
54
What proteins does teneurin interact with in the mammalian cortex? What experiments have shown this?
Teneurin interacts with latrophilin and FLRT, shown via stripe assays: - Teneurin/FLRT with latrophilin is cell repulsive, but not axon repulsive. - Teneurin binds itself, causing adhesion to instruct synapse connection specificity
55
How could nanobodies influence cancer cell migration?
Stripe assays show that the repulsive interactions seen between GPC3 and Unc5 are found in many cell types outside of the brain, including in cancer lines. In vivo models have shown that different nanobodies (nano-glue or nano-break) either inhibit or promote the collective migration of neuroblastoma cancer cells, suggesting the tech could be used in cancer therapy.
56
Why is the location of axons so important in the visual system?
Visual information in the retina is topographically represented in the brain as a map. To preserve the spatial relationships of the visual image on the retina, the axons must terminate at appropriate positions within the brain, and choose the correct synaptic partners.
57
What differentiation processes does a postmitotic neuron go through? (MADSS)
- Migrating to its final destination - Axon extension - Establishing dendrite branching patterns - Forming synapse connections - Modifying synapse connection