Virology Flashcards

1
Q

What reasons would you have to order lab tests?

A

O diagnosis
O screening
O Monitoring
O research

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2
Q

What are some pre-analytical errors that can occur?

A

O mislabelled sample
O incorrect test tube used
O pt ID incorrect
O form not completed properly
O test request lost
O incorrect test ordered
O sample collection error
O transport error
O incorrect sample handling

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3
Q

What tests are used in the virology lab?

A

Oserology- antibody testing
O molecular - (pcr, Elisa)

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4
Q

What viruses are common in the prenatal period? (LIST 6)

A

O CMV
O parvovirus b19
O rubella
O hsv
O HIV
O EBV
O hepatitis b+c
o varicella zoster
O zika virus

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5
Q

What viruses are common in the perinatal/postnatal period? (List 6)

A

O HIV
Ohsv
O CMV
Oenterovirus
O Varicella zoster
O hepatitis b+c
o adenovirus

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6
Q

What viruses are common in the postnatal period? (List 5)

A

O enterovirus
O rotavirus
O CMV
O varicella zoster
O hepatitis
O influenza
O adenovirus

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7
Q

How do you determine what sample to take to isolate the virus?

A

Falco-oral transmission = stool
Resp droplets = vesicle fluid
Vertical = blood

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8
Q

Specimen + test for HSV

A

O vesicle fluid
O CSF
= HSV PCR

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9
Q

Enterovirus specimen and test?

A

O throat swab / stool
= Enterovirus PCR

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10
Q

Varicella zoster specimen + test?

A

O vesicle fluid /blood / clinically
=Varicella zoster PCR
= blood = Igm

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11
Q

What type of rash is in picture 2?

A

Maculapapular

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12
Q

What type of rash is in picture 3?

A

Vesicular

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13
Q

What type of rash is in picture 4?

A

Pustules

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14
Q

What type of rash is in picture 5?

A

Bulla

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15
Q

What type of rash is in picture 6?

A

Nodules

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16
Q

Measles presentation, specimen, + test

A

O presentation
> koplik spots
> maculopapular rash
> 3 C’s = conjunctivitis, cough, coryza
O specimen = blood, throat swab within 5 days of rash
O serology = IgM/G
Swab = PCR

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17
Q

Complications of measles

A

O Otitis media
O diarrhoea
O pneumonia
O encephalitis

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18
Q

Measles treatment +prevention

A

O vaccine 6 + 12 months
O treatment = supportive (vit A)

19
Q

Rubella sx, specimen + test

A

O sx
> maculopopular rash
> many asymptomatic
O specimen
>blood = IgG/M (older)
> throat swab = PCR (congenital)

20
Q

Complications of congenital rubella

A

O miscarriage
O congenital rubella syndrome ( healing loss, heart defects, glaucoma cataracts )
O abnormal fetal growth

21
Q

HHV 6/7 sx, specimen, test

A

① fever without rash
② rash without fever

Specimen = clinical/blood (IgG/M or PCR)

22
Q

Parvovirus sx, specimen, test

A

Sx
O slapped cheeks malar rash
O trunk maculopapular rash

Specimen = blood (IgG/M or PCR)

23
Q

Mumps sx, specimen, test

A

Swelling of the parotid gland (parotomegaly)
Specimen = blood/ buccal swab (IgG/M or PCR)

24
Q

CNS viruses, specimen + test

A

Enterovirus, Mumps, HSV 1, rabies -“ panel” done which screens for all ( CNS viral)
All CSF = PCR
Except rabies ( saliva = PCR )

25
Q

Polio specimen + test

A

O 2 stool,s 2 days apart within 2 weeks of sx =PCR and cell culture

26
Q

What is pathognemonic of HSV infection

A

Dendritic ocular ulcer

27
Q

Resp viruses, specimen + test

A

Nasopharyngeal swab →PCR

28
Q

HIV diagnosis protocol

A

O > 24months = serology (ELISA) → antibodies x2 + tests
O <24 months = HIV PCR (antibodies may be from mom) → x2 + tests

  • exception = 18 - 24m: screen first with serology, lf positive, confirm with PCR

Injury on duty = serology
HIV = own test tube

29
Q

How is covid-19 transmitted ?

A

O resp droplets > 5 micrometers, travel < 1m
O direct contact
O indirect contact

30
Q

Complications of SARS COVID-19 ?

A

Pneumonia
ARDS
Septic shock
Acute kidney injury
Death

31
Q

Risk factors for covid-19 complications

A

O hypertension
O older age
O diabetes
O obesity
O COPD
O cardiovascular disease
O malignancy

32
Q

Drugs used for covid19 treatment

A

① dexamethasone (steroid)
②antivirals
> protease inhibitors - paxlovid
> nucleoside analogues - remdesivir
> monoclonal antibodies - sotrovimab ( strain variant specific)

33
Q

What is the 90 -90 - 90 target?

A

① 90% of HIV + pt will know their diagnosis
② 90% of HIV pt have access to treatment
③ 90% of already diagnosed on treatment will have VL LDL

34
Q

What does me “test and treat” HIV guideline say?

A

Treatment will be initiated after confirmation of HIV infection (regardless of CD4 count level)

  • crypococcus + Tb meningitis = defer tx 4-6 weeks
35
Q

What is the 1st line HIV regimen?

A

3TC + TDF + DTG ( >35kg +>10y)
Lamivudine + Tenofavir + dolutegravir

36
Q

How do you know when 1st line ARV’s are failing?

A

Vl >1000 for 3 months with compliant patient

37
Q

ARV side effects

A

O git → diarrhoea, nausea
O rash
O neuro → dizziness, headaches, vertigo
O weight gain

38
Q

Which hepatitis lead to chronicity and what does it lead to?

A

Hep b+c
> cirrhosis
> liver ca
> liver failure

39
Q

What test do you do for hep B?

A

O acute
anti-HBs
HBsAg

O chronic
HBsAg
Total anti-HBc

40
Q

HBV treatment

A

Tenofevir
Lamivudine

41
Q

What is gold standard of HCV active infection?

A

Detection of HCV RNA

42
Q

HCV treatment

A

O pegylated interferon and ribavirin = standard

43
Q

What is the polio vaccine called?

A

OPV ( oral )

44
Q

Hpv vaccine

A

Gardasil (9 - 26y)