Viruses Flashcards
(45 cards)
What are capsids made of?
Small peptide units called protomers or structural units.
They can be composed of one type of protein unit or many different sub units
List the purposes of viral capsid sand envelopes
Protection while traveling between hosts
Protection of their genetic material from pH extremes, temp extremes as well as the hosts immune response and proteolytic enzymes
Attachment to host cells - external molecules act to assist attachment but may also be markers for the immune response
What is a nucleocapsid?
The proteins of a capsid are arranged in either a helix or a icosahedral shape.
Name the types of viral capsid?
Helical and icosahedral
Helical - The genomic information is held in the groove of the capsid.
The term nucleocapsid refers to the intimate relationship between the nucleocapsid acid and the protein subunits
Example of a helical virus is the tobacco mosaic virus
Icosahedral - spherical in shape with units forming equilateral triangles using three protomers. Only accommodates small genomes
Can be very complex with 13 subunits per protomer
Example of a icosahedral virus is the adenovirus
Some can be neither helical or icosahedral. The t bacteriophage is very complex - see pg 17
Nucleosomes are membrane bound viruses which encompass their genome. Their exterior coat is covered in fibres - example pox virus
What is the function of the viral envelope?
The viral envelope surrounds the capsid and is often composed of host proteins. It can be loose fitting or tight. It often has the virus’s glycoproteins inserted into it which allow attachment but also are targets of the hosts immune system
Describe some features of the viral genome
The viral genome is small
Can have up to three reading frames therefore producing three different proteins from the same sequence
Can be single stranded, double stranded, linear or circular
Can be composed of DNA or RNA but not both
What is ambisense DNA?
Single stranded RNA with both positive and negative sections - found in some viral genomes
Give an example of a DNA virus
Small pox, slap cheek and herpes
The viral proteins encoded for by a viral genome can be split into three groups. Name them?
Structural proteins - surface proteins or protomers which form the capsid
Non structural proteins (regulatory proteins) - involved in viral genome transcription, such as enzymes etc
Neither structural or non structural - enzymes found in the virus’s capsid
Name the 3 main theories in the evolution of virus’s
Retrograde theory - viruses evolved from intracellular parasites by shedding all non essential genes - unlikely
Viruses evolved from cellular components composed of nucleic acids - for example plasmids and transposons which can replicate separately from a bacterial genome - possible
Viruses have evolved alongside cells and have always been here since the emergence of life
What is reverse transcriptase?
Reverse transcriptase is an RNA dependant DNA transcriptase. This enzyme transcribes DNA from an RNA template.
What is a virus receptor?
Surface molecules on host cells which allow attachment and entry of a virus into the cell
In order for some viruses to enter a cell there must be sequential interaction with more than one receptor before entry can be achieved, for example HIV virus required CD4 receptors as well as chemokine receptors before it can enter the host cell
Define tropism?
The preference of a virus for a specific species of host or specific cell type
Explain how an enveloped and a nun enveloped virus uncoats in a host cell….
Enveloped viruses fuse with the plasma membrane of the host cell or endocytic membranes and release capsids into the cytoplasm which contain nucleic acids.
Example HIV
Others enter via receptor mediated endocytosis. Example influenza
Unenveloped viruses can not fuse with the membranes and therefore have to disrupt the membrane of the host cell.
Example adenovirus which goes on to deliver its nucleic acid directly into the nucleus of the cell
The polio virus form pores in the membrane to deliver its nucleic acid
Example polio
In general terms, where do RNA and DNA viruses replicate their genetic material?
RNA - cytoplasm
DNA - nucleus
Some use their own enzymes to initiate replication, others use the host enzymes
What are early and late genes?
Early genes are the first to be transcribed and are usually non-structural such as genes for replication
Late genes are transcribed later and are structural such as genes which code for capsid production
Give examples of RNA and DNA viruses…
RNA - HIV, polio and measles
DNA - small pox and hepatitis B
How are viruses classified?
Baltimore classification system
Seven classes depending on the steps they take to produce mRNA which can then be translated by the host cell
See figure 3.12 on pg. 24
Describe the HIV virus
Retrovirus which replicates using reverse transcription
Single stranded positive RNA
Classed in the sub group lentivirus meaning slow as it causes disease over a long period of time
Affects the immune and nervous system
Describe the structure of an HIV virus?
Exterior
Roughly spherical
Enveloped
Studded with about 100 spikes dispersed evenly
Spike formed by three copies of gp120 (glycosylated viral proteins) non covalently attached to a stalk composed of gp41(glycosylated viral proteins)
Surface also has MHC I and MHC II Immune system proteins from the host cell.
Interior
2 strands of positive RNA
Reverse transcriptase binds to the RNA as well as integrase
Nucleocapsid proteins p6 and p7 protect the RNA from host proteases
Viral proteases process the polyproteins into functional proteins
What cell surface molecules are required for an HIV virus to bind?
CD4 and chemokine a
Describe the replication process of HIV
Once inside the cell ss +ve RNA is transcribed to -ve ss DNA by viral reverse transcriptase
Reverse transcriptase then synthesises +ve ss DNA which combines with another ss to for double stranded +ve DNA
DNA is then transported from the cytosol into the nucleus via microtubules through the nuclear pore
Viral DNA is integrated into he hosts genome by the viral protein integrase to form provirus DNA
Provirus DNA is then used as a template for viral mRNA synthesis.
Viral protein Rev transports the mRNA out of the nucleus and into the cytosol where it is transcribed into viral proteins
These proteins congregate at the cell membrane where they mix with other viral proteins
Budding occurs and a new viral particle is formed
Once released from the cell, maturation takes place when proteases cleave the viral proteins into functional viral proteins.
Describe the polio virus?
Small RNA virus
Single stranded +ve RNA
Affects the gut but can also spread to the blood and the central nervous system
Stable at a low pH therefore able to get past the stomach and into the intestine
Describe the structure of the polio virus?
Small icosahedral capsid with 60 protomers
Each protomers composed of 4 viral proteins - VP1-4
See pg 16 for a diagram and EM of the virus