Viruses and Cancer Flashcards

(43 cards)

1
Q

Outline the key characteristics of a virus

A
  • Enormous variety of structure and complexity
  • Comprise of:
    • Genetic material (DNA/RNA - SS/DS )
    • Protein capsid
    • Membrane envelope
  • Cannot reproduce independently of host cell (obligate parasites)
    • Virus replication normally results in cell death
      • However the viruses that cause cancer don’t tend to cause cell death. They persist in host for many years.
  • Cancer cell transformation NOT a normal stage/phase of the virus life cycle
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2
Q

What functions do a host cell provide that a virus requires

A
  • Translation of viral mRNA into protein (all viruses)
  • Genome transcription
  • Genome replication
    • depending on complexity of the virus
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3
Q

What events occur that result in cancer, How do viruses affect this process

A
  • Cancer is the accumulation of many mutations – takes a long period of time, not just caused by one single event
  • Normal cells have a strong balance of expression of proto-oncogenes & tumour suppressor genes.
  • In cancer this balance becomes dysregulated such that oncogenes become inappropriately activated and tumour suppressor genes become inactive.
  • Viruses that cause cancer drive via this process.
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4
Q

What can contribute to cancer accumulation of genetic mutations

A
  • Genetic component - e.g. germline line mutation in P53
    • some people more predisposed than others
  • Dietary factors – carcinogens that we ingest in our diet
  • Chemical exposure – cigarette smoking
  • Viral infection – some viruses can infect cells upstream of dietary/chemical co-factors and induce entry into the pathway of carcinogenesis.
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5
Q

Which Biological agents are classified as carcinogenic to humans

A
  • VIRUSES
    • Epstein –Barr Virus (EBV)
    • Kaposi sarcoma associated herpes virus (KSHV)
    • Hepatitis C virus (HCV) (cause liver cancer)
    • Hepatitis B virus (HBV) (cause liver cancer)
    • Human T-cell lymphotropic virus type 1 (HTLV1) (causes T cell lymphoma)
    • High-risk Human papillomavirus types
      • responsible for 5% of all human cancers
    • (HPV16, HPV18 plus other high risk types)
    • Merkel cell polyomavirus
    • Human immunodeficiency virus type 1 (HIV-1)
    • very very rare for someone to get cancer if they catch these viruses, just increases risk
  • BACTERIA
    • Helicobacter pylori (causes gastric cancer)
  • LIVER FLUKES
    • Schistosoma haematobium
    • Opisthorchis viverrine
    • Clonorchis sinensis
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6
Q

Where in the world is there a higher incidence of infectious agent driven cancers

A
  • Far greater proportion occur in developing versus developed countries
  • Hygiene and healthcare interventions not so good, vaccinations, close knit communities etc
  • more common to get a HPV associated cancer in an LEC than more developed country
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7
Q

Which viruses cause which types of cancer/tumours

A

Epstein is the one that can cause multiple cancers

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8
Q

How high is the correlation between cancers and viruses

A
  • we known that cancer cell transformation is not a normal stage/phase of the virus life cycle.
  • These viruses do not cause cancer in every individual they infect – quite rare.
  • E.g. EBV is associated with many lymphomas – however many individuals are infected by EBV.
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9
Q

What are direct vs indirect virus carcinogens. dq

A
  • Viruses can be classed as direct or indirect carcinogens.
  • Direct carcinogens:
    • When viruses infect a cell, they bring their own oncogenes.
    • Viral oncogenes directly contribute to cancer cell transformation e.g. HPV, EBV, KSHV
  • Indirect carcinogens
    • Viruses that cause cancer through chronic infection, inflammation and immunosuppression – eventually lead to carcinogenic mutations in the host.
    • E.g. HIV only causes cancer because of the immune suppression and inflammation that is creates which allows other viruses to come in and promote cancer progression.
    • Beta-HPV types infect skin and are associated with non-melanoma skin cancer – block apoptosis (cell death) of UV damaged skin cells.
      • However this virus are no found in cancerous cells (hit and run mechanism)
  • Direct or indirect?
    • Some viruses are difficult to place in either group e.g. HCV, HBV, HTLV-1
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10
Q

Outline the how HIV increases the risk of cancer developing

A
  • = Indirect carcinogen
  • There is a profound immunosuppression in HIV-1 infected patients (due to infection of T cells)
    • allows Opportunistic infections establishment by persistent infectious agents including the cancer-causing viruses
    • this results in much higher chance of developing cancer
  • Persistent immune activation by HIV-1 may lead to chronic tissue damage
    • enhances DNA damage and enhanced cancer formation.
  • HIV-1 may also contribute to cell cycle deregulation or alter the micro environment
  • In HIV-1 infected individuals there is large increased incidence of cancers caused by other infectious agents including viruses. E.g. KSHV in HIV negative patients almost no cancers attributed to it, only in HIV positive people
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11
Q

What were Koch’s 4 postulates for establishing whether a virus would cause disease in the olden days

A

The infectious agent is regularly found in the lesions of the disease.

  • However, as discussed earlier there are viruses which engage in hit and run mechanism.
  1. The infectious agent can be isolated in cultures from fluids or tissues of an organism with the disease.
  • However, development of cancer from these viral infections is not normal part of viral lifecycle, these cancers are no longer producing the virus.
  1. Inoculation of this culture into a susceptible host produces the same disease.
  • Not true e.g. lots of people are infected with EBV yet most won’t get cancer.
  1. The disease can be indefinitely transmitted by the recovered infectious agent.
  • We can’t recover the infectious agent and we can’t transmit cancer to someone.
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12
Q

Criticise Kochs postulates and explain why it is not used

A
  • All of his postulates fail when applied to infectious agents and cancer becuase it is difficult to establish virus associated human cancers
  • Viral infections have a long latency period between primary infection and tumour development (5-50 years) so it is difficult to prove initial infection caused cancer e.g. 50 years later.
  • Only small % of virus-infected individuals develop the tumour.
  • Complex multi-step pathogenesis – not just the viral infection that causes the cancer:
    • cofactors involved
    • viral genome can be disrupted in the cancer
  • Virus infection is one link in a chain
    • if the virus integrates, it can’t get back out of the human genome again so it is difficult to isolate it. You cannot isolate the full, pure viral genome
  • No experimental animal models for the human cancer
    • so it is very difficult to do experiments in a lab to show that if you infect with Human papilloma virus an animal will develop cancer as HPV only infects humans.
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13
Q

Describe herpes virus (EBV)

A
  • Usually get an asymptomatic infection during childhood (if infection delayed till teenage years - infectious mononucleosis)
  • Then Lifelong silent (latent) infection
  • 95% of worldwide population infected
  • Common in africa
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14
Q

What cancer can EBV cause

A
  • It can cause Burkitt lymphoma and Nasopharyngeal cancer
  • However, only small % infected individuals develop cancer
  • Infection alone is not sufficient for cancer development
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15
Q

Can EBV alone cause cancer

A
  • Other factors involved - multifactorial
    • E.g. EBV causes Burkitt lymphoma only in presence of other cofactors ⇒ malaria & MYC oncogene chromosome translocation to Ig enhancer.
    • This results in c-myc deregulation.
    • EBV causes Nasopharyngeal cancer only in presence of other cofactors ⇒ eating salted fish (nitrosamines); genetic changes
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16
Q

Outline the link between the epidemiology of Kaposi sarcoma and HIV infection

A
  • Classic KS is very rare
    • only really found in elderly Mediterranean men (due to cofactors of high UV exposure & genetics)
  • In HIV Infection, Kaposi sarcoma is:
    • 20,000X more common than in general population
    • 300x more common than in other immunosuppressed groups
    • So we know that the immune suppression by HIV is allowing KSHV (virus) to replicate in those cells – causes induction of that cancer.
  • Patrick Moore and Yuan Chang (1994) isolated HHV8/KSHV viral sequences from AIDS-related Kaposi sarcoma tumours
    • Representational difference analysis (RDA) – sequences present in tumours and not in normal tissue
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17
Q

Outline the link between HPV and cervical cancer

A
  • We now know that HPV is an absolute necessary cause of cervical cancer
    • i.e. 99.7% of all cervical cancer contain HPV DNA – it is the HPV oncogenes are driving the cancer.
  • There are 400+ human papilloma viruses.
  • Most of those do not cause significant disease
    • some cause warts on hands and feet, some cause genital warts
    • handful of HPV types that cause cancer – called high risk HPV types.
  • The most common types within this is HPV 16 & 18 – cause >75% of cervical cancers and > 50% of vaginal and vulvar cancers.
  • Another piece of evidence that HPV is the absolute cause of cervical cancer is that we know that looking at family studies that Cervical cancer is not hereditary.
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18
Q

What other cancers can HPV cause

A
  • anal
  • penile
  • Head and neck
19
Q

What are High risk vs low risk HPV

A
  • High = cancer causing types → HPV 16 + 18
  • Low = Non cancer causing types → HPV 6 + 11
20
Q

What is HPV and How is it a direct carcinogen

A
  • = a small DNA virus dependent on the host cell for replication of the viral DNA
    • only encodes for 8000 base pairs very very tiny
    • So small that it doesn’t encode it’s own replication machinery,it steals it. Doesn’t have its own polymerases
  • It is a DIRECT carcinogen
    • Viral oncogenes contribute directly to cancer cell transformation - - E6 and E7 are viral oncoproteins
    • HPV is responsible for many types of cancer e.g. skin cancer, cancer of oropharynx, cervical cancer etc.
    • drop in incidence of cervical cancer because of screening
21
Q

Link between HPV and cervical cancer

A
  • HPV has an absolute 100% association with cervical cancer and a very strong association with other types of cancer.
  • There are 13 types known to cause cancer – designated by WHO,
  • They are class 1 carcinogens.
  • HPV 16 & 18 viral types cause the majority of the disease
22
Q

What is the HPV life cycle absolutely dependent on

A

papilloma virus life cycle is absolutely dependent on epithelial differentiation of skin - only infects keratinocytes.

23
Q

What layer of the skin undergoes mitosis

A
  • Only the cells in the basal layer are mitotically active
  • They go through cell division and copy their own DNA to make daughter cells
    • when they divide one cell stays at the bottom (like a stem cell to make more cells) and one cell migrates up
    • As soon as cell detaches from basement membrane it starts to differentiate
  • In the basal layer of skin the cells are undifferentiated – don’t produce keratin.
  • As these cells divide, they begin to move up epithelial layer – this induces a programme of differentiation in these cells so only cells in top layers of your skin that produce keratin.
24
Q

Where does infection of the papilloma virus occur, why

A
  • The papilloma virus is small and it cannot replicate its own genome
  • it needs to use host cell DNA replication machinery to copy its genome.
  • Therefore it can only infect the basal layer cells as it needs cells that are undergoing DNA replication as they have DNA replication machinery.
  • So infection occurs in the basal layer.
25
How has the HPV virus evolved and what is the effect of this evolution
- low level (once or twice) and not express many of its genes – only E6 & E7. - amplifies viral genome in the upper layers of skin because those areas are not under tight immune regulation anymore - This allow it to hide from immune system for decades. - It is only once the infected cells move up through epithelium that the viral genome is amplified up to 1000 copies per cell and the capsid proteins are synthesised. - I.e. infectious particles are only present in upper layers of skin – so virus can hide from immune system
26
Summarise the HPV life cycle (making it a carcinogen)
- HPV Infects basal cells (mitotically active) - HPV uses the host cell DNA replication machinery to replicate. - BUT productive replication (where viral DNA is amplified) occurs in cells that would normally be mitotically inactive. - uses oncogenes E6 + E7 to make them enter cycle again - So the virus pushes these cells back into the cell cycle to complete its life cycle
27
What 2 tumour suppressor genes do oncogenic viruses target within the infected cell
- Retinoblastoma - P53
28
What does E6 and E7 do
- E6 & E7 drive cell cycle proliferation to allow the virus to copy its own genome. - They target 2 very important tumour suppressor genes present in the host cell.
29
Describe the mechanism of E7
- E7 binds and inactivates the tumour suppressor gene retinoblastoma and that pushes the cells to proliferate. - Retinoblastoma → important in preventing cell cycle entry. - Because E7 gets rid of it – these cells now proliferate more rapidly. - normally result in a lot of stress in the cells → activates the tumour suppressor gene P53 which would induce apoptosis in those cells. But this doesn’t happen.
30
Describe the mechanism of E6 and what occurs after it
- binds and degrades P53. - So now these cells are being pushed to divide more rapidly as then they should be as - E7 inactivates checkpoint protein RB and P53 is no longer activated as E6 has got rid of it.
31
What does Rb (retinoblastoma) do
- = protein important for a checkpoint or restriction point in the cell cycle going from G1 to S phase. - RB normally phosphorylated or hypophosphorylated
32
How is E2F released and what does E2F does
- several positive growth signals can activate cyclin D CDK4,6 complex. - This then phosphorylates Rb - This prevents Rb binding to a family of transcription factors called E2Fs, releasing them to activate transcription of specific genes. - It is E2F TF that drive cell cycle entry. They go into he nucleus of the cell and activate expression of genes important for cell cycle progression - Active E2F enhances transcription of genes required for S phase progression. - RB keeps this process under control
33
Summarise the Rb molecular mechanism
- Rb hypophosphorylated - E2F transcription factors bind to RB - receives possitive growth signals - stimulated cyclin D and kinase → CDK4 + CDK6 which now phosphorylate rb - RB now hyperphosphorylated - Cells can progress and enter s phase - E2F released and can enter nucleus - finds target promoters that have a specific sequence in them and binds to them. Drives transcription
34
Describe in more detail the mechanism of E7
-E7 degrades RB by binding to a motif called LXCXE CR2 - Induces degredation once it has binded to it - When you have HPV E7 binds to RB, constantly degrading it, and prevents its binding to E2F - so E2F is free to bind in the abscence of possitive growth signals to its target promoters and drive transcription of genes that are important for progression into S phase - allows cells to keep on dividing even wehn not stimulated to do so - Leads to dna damage and mistakes, this activated P53
35
Describe E6 molecular mechanism on p53 in more detail
- If the cell is stressed or experiencing negative growth signals, p16 or p21 are activated wich inhibit Cyclin D/Cdk4,6 to prevent Rb phosphorylation and arrest the cell at the G1 restriction point - P53 is a good sensor of stress. - It can sense damage and then induce cell cycle arrest or senesce or apoptosis or repair DNA damage. - But E6 degrades P53 by binding to host cell factor called E6AP. - This is a ubiquitin ligase and it ubiquitinates P53 resulting in its degradation. So cells no longer die when they are stressed.
36
how did the Hep b virus vaccine come into play
- HBV is endemic in China, Indonesia, Nigeria, Taiwan and also high in rest of Asia and Africa – similar to distribution of Hepatocellular carcinoma – see graph. - When this was discovered the HPV vaccine was developed to prevent HBV associated cancer development. - HBV vaccine constitutes purified Hepatitis B virus surface antigen (HBsAg), licensed in US in 1979 - First cancer vaccine! - In US, successful at reducing HBV infection once at-risk population targeted - Introduced into Taiwan in 1984, all new-born babies vaccinated against hep b virus to prevent mother-to-child transmission,
37
What was the effect of the vaccine in taiwan when it was first introduced
Incidence of Liver Cancer in Taiwan Pre- and Post- Vaccine (2009) - Introduced into Taiwan in 1984, all new-born babies vaccinated against hep b virus to prevent mother-to-child transmission, - Data from this study: - Incidence of HCC shown in orange in people born before 1984 and so were not vaccinated vs incidence of same cancer in those born after 1984 and so were vaccinated. - HBV vaccine is cheap, stable, easy to administer, immunostimulatory, works very well.
38
How does the cervical screening programme help prevent cervical cancer, how does a pap smear work
- Many people are vaccinated against HPV. - Cervical cancer incidence has dropped in develop countries because We have a good cervical screening programme: - HPV infects the SCJ cells of the cervix. - So when a cervical pap smear is taken the brush that is used targets these cells. - Prior to a change these cells were taken and sent off for histological analysis and pathologist would look at them to determine if they looked abnormal or normal. - The presence of virus is the cause of abnormal histology. - This has been successful for reducing burden of cervical cancer for women in UK - I.e. Cytological abnormalities in the cervix monitored by the “cervical smear” or “Pap” test
39
Outline the history of the NHS cervical screening problem
- Cervical cytology initiated in 1940s but was very sporadic and not well coordinated - 1988 saw emergence of a “true” programme. - Commences at 25 years – then called back every 3 years until 50 – then every 5 years, until 64 - Registration in central computer database known as the ‘Exeter’ system. - Interlinked “failsafe” processes - now, research has shown that HPV is an important driver of cervical cancer so now instead of doing cytology which can be subjective, the samples are sent for presence of virus instead via DNA testing. - Then only if sample is +ve is the cell cytology is looked at
40
How effective is the cervical smear test
Established properly in late 1980s - incidence of invasive cervical cancer has correspondingly dropped due to screening programme.
41
How can HPV DNA testing effect incidence rates
- If women are sent for HPV testing then you catch every single case of HPV drive disease at an early stage - so the incidence of invasive carcinoma (CIN3) is very low if women are tested for just HPV or combined HPV and cytology. - But if they do not do either then the incidence of cancer is much higher overtime.
42
What is the prophylactic HPV vaccine
- Developed from proteins that are expressed on capsid of HPV virus particle
43
What is the impact of HPV vaccination on cervical cancer incidence, Is the HPV vaccine working
- It is difficult to know that the vaccine is working as the target vaccination age is teenagers - we want to vaccine people before they become sexually active as it is a prophylaxes vaccine - need to have it before you become infected - once you are infected virus lays dormant - actual incidence of cervical cancer peaks much later in life. - People before infected early in sexual onset but only develop cancer in 50-60s. - So working out whether vaccine is having any effect is difficult as 40yr latency period. So yes it is working but expensive and not routinely used in developing countries where the need is greatest.