Week 1 Flashcards

1
Q

ENTERIC PATHOGENS general characteristics

A
  • Gram-negative rods
  • motile by peritrichous flagella or non-motile
  • do not form spores, capsulated or non-capsulated
  • aerobic and facultatively anaerobic
  • oxidase negative, catalase positive
  • reduce nitrate to nitrite
  • ferment (rather than oxidise) D-glucose, often with gas production
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2
Q

GENERAL CHARACTERISTICS AND
NATURAL HABITAT E. coli

A
  • widely distributed on plants, in soil, water, intestines of animals and humans
  • most prevalent facultative gram-negative rod in faeces
  • most common bacterium isolated in clinical microbiology laboratories
  • most common cause of urinary tract infection
  • common cause of intestinal and extraintestinal infections
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3
Q

ANTIGENIC STRUCTURE of E. coli

A
  • serologic typing based on determination of:
    − O antigen type (more than 170 O antigens)
    − H antigen type (75 H antigens)
    − K antigen type (100 K antigens)
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4
Q

VIRULENCE FACTORS - SURFACE
FACTORS E. coli

A
  • polysialic acid capsule - K1
    −enables organism to resist killing by neutrophils and serum
  • fimbriae or pili
    −enable organism to attach to various host tissues
  • adhesins
    −important in uropathogenicity and intestinal infections
  • O antigens
    −important in binding of organism to host cells
    − protect organism from effect of complement
  • lipid A
    − portion of lipopolysaccharide - LPS
    −responsible for endotoxic effects seen in bacteraemic patients
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5
Q

ENTEROTOXINS E. coli

A
  • heat-labile enterotoxin - LT
    − similar to enterotoxin of Vibrio cholerae
    − stimulates adenyl cyclase activity in epithelial cells of small intestinal mucosa resulting in loss of fluids and electrolytes
    − genetic information encoded on plasmids
  • LT-II − second class of LT
    − contains at least 2 different toxins LT-IIa and LT-IIb
    − mode of action similar to that of LT
    − genetic information encoded on bacterial chromosome
  • heat-stable enterotoxins - ST
    − STa or STI - methanol soluble
  • active in suckling mice and neonatal pigs
  • activates guanylate cyclase in intestinal mucosa cells
    causing secretory response
    − STb or STII - not methanol soluble
  • active only in weaned pigs
  • mechanism of action unknown

verocytotoxins (Shiga toxins) - VT1 and VT2 (Stx1 and
Stx2)
−termed verocytotoxins because of their irreversible
cytotoxic effect on Vero tissue culture cells
−inhibit protein synthesis in eukaryotic cells

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6
Q

VIRULENCE FACTORS - OTHER FACTORS E. coli

A
  • filterable haemolysin
    − lyses erythrocytes of variety of species − cytotoxic for leukocytes, chicken and mouse fibroblasts − contributes to inflammation, tissue injury, impaired host defences− encoded by chromosomal genes or by plasmid
  • cytotoxic necrotising factor - CNF
    − protein
    − causes necrosis in rabbit skin
    − produced only by haemolytic strains
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7
Q

CLINICAL SIGNIFICANCE E. coli

A
  • leading cause of nosocomial and community-acquired urinary tract infections
  • causes pulmonary infections
  • important cause of neonatal meningitis, rarely cause of meningitis in older populations
  • mortality rate between 40% and 80%, majority of survivors have subsequent neurological or developmental abnormalities
  • can cause wound infections, particularly in abdomen
  • peritonitis frequent complication of ruptured appendices
  • can invade bloodstream from any of primary infection sites
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8
Q

Enterotoxigenic E. coli (ETEC)

A
  • causes: dehydrating infantile diarrhoea in developing countries, traveller’s diarrhoea
  • can produce nausea, abdominal cramps, low fever, profuse watery diarrhoea -like mild case of cholera
  • traveller’s diarrhoea can be severe
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9
Q

Enteropathogenic E. coli (EPEC)

A
  • causes enteric diseases particularly in small children
  • characterised by fever, vomiting, prominent and watery diarrhoea with mucus but not blood
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10
Q

Enteroinvasive E. coli (EIEC)

A
  • produces enteritis characterised by fever, abdominal cramps, watery diarrhoea, or typical bacillary dysentery with leukocytes, blood, mucus like Shigella spp.
  • like Shigella spp. and unlike most E. coli strains associated with enteritis, invades colonic mucosa, multiplies within mucosal epithelial cells, disrupts epithelial cells
  • most strains non-motile, late- or non-lactose-fermenters
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11
Q

Enterohaemorrhagic E. coli (EHEC)

A
  • causes asymptomatic infection, mild diarrhoea, diarrhoeal illness characterised by non-bloody progressing to bloody diarrhoea, abdominal cramps, lack of significant fever
  • illness usually self-limited, lasts 5 to 8 days
  • 2% to 7% of patients develop haemolytic uraemic syndrome - HUS* strains water-borne and food-borne, person-to-person transmission occurs by faecal-oral route
  • more than 50 serotypes, E. coli O157:H7 prototype
  • does not ferment D-sorbitol - characteristic used to differentiate this serotype on MacConkey-sorbitol agar medium (SMAC)
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12
Q

Enteroaggregative E. coli (EAEC)

A
  • associated with chronic diarrhoea in many parts of world
  • in children produces watery, mucoid diarrhoeal illness with low-grade fever, little or no vomiting
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13
Q

Diffusely adherent E. coli (DAEC)

A
  • majority of patients have watery diarrhoea without blood or
    faecal leukocytes
  • carries gene encoding surface fimbria designated F1845* pattern of adherence to epithelial cells in vitro: diffuse
    adherence
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14
Q

NATURAL HABITAT AND ANTIGENIC
STRUCTURE Shigella

A
  • humans reservoir only, not normal flora
  • cause bacillary dysentery
  • Shigella divided into 4 major O antigenic groups: A, B, C, D
  • in addition to major O antigens, groups A, B, and C contain minor O antigens
  • group D biochemically distinct from other Shigella spp.
  • some strains posses K or envelope antigens (not important for serologic typing)
  • since all Shigella spp. non-motile - no H antigens
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15
Q

VIRULENCE FACTORS Shigella

A
  • O antigens −2 types:
  • smooth lipopolysaccharide structure termed phase I colony type
  • rough lipopolysaccharide structure termed phase
    II colony type
    −responsible for ability to survive passage through host defenses
  • Invasiveness
    −virulent strains penetrate mucosa and epithelial cells of
    colon
  • Shiga toxin
    −interferes with protein synthesis − mode of action as toxic plant protein ricin
    − neurotoxic −cytotoxic −enterotoxic −causes microvascular damage to intestine resulting in haemorrhage
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16
Q

CLINICAL SIGNIFICANCE Shigella

A
  • causes classic bacillary dysentery - shigellosis only in higher primates
  • spread from human to human through faecal-oral route
  • reservoir - carrier who sheds organism in faeces (carrier state lasts for 1 to 4 weeks)
  • from carriers organisms spread by flies, fingers, water, food
  • high communicability attributed to low infective dose needed to produce disease (10 to 100 organisms)
  • characterised by high fever, chills, convulsions, abdominal cramps, tenesmus, frequent stools (small-volume stools with blood and mucus), generalised myalgias
  • in previously healthy adults spontaneous cure occurs in 2 to 7 days, mortality due to dehydration and electrolyte
    imbalance
17
Q

GENERAL CHARACTERISTICS AND
NATURAL HABITAT Salmonella

A
  • all strains motile by peritrichous flagella with exception of Salmonella Gallinarum and its variant Pullorum
  • frequently found in sewage, river, sea-water, in certain foods
  • primary pathogens of lower animals
  • humans only known reservoir for Salmonella Typhi
  • animals principal source of non-typhoidal Salmonella infections in humans
18
Q

Antigenic structure Salmonella

A
  • O antigens −somatic antigens, group specific − heat-stable polysaccharides, form part of cell wall
    lipopolysaccharide
  • Vi antigen
    −surface heat-labile polysaccharides −inhibit agglutinability of organisms by homologous O antisera
  • H antigens − flagella antigens, type specific − heat-labile proteins of flagellae − have unique character of diphasic variation
  • Phase 1 - specific phase
  • Phase 2 - non-specific phase
19
Q

THE KAUFFMANN-WHITE DIAGNOSTIC
SCHEME

A
  • used for serologic classification of Salmonella
20
Q

VIRULENCE FACTORS Salmonella

A
  • O antigenic side chains and Vi antigen
    − responsible for ability of organism to attach to host receptor cells and to survive intracellularly − prevent activation and subsequent deposition of complement factors on bacterial surfaces − protect organism against phagocytosis
  • invasiveness
    − like shigellae virulent salmonellae penetrate epithelial lining of small bowel
    − unlike shigellae, salmonellae do not merely reside in epithelial lining but penetrate into subepithelial tissue
  • endotoxin
    − responsible for fever seen during bacteraemic stages of enteric fever (releases endogenous pyrogens from leukocytes)
  • enterotoxins − similar to heat-labile - LT and heat-stable - ST enterotoxins of Escherichia coli
  • cytotoxin
    − important in cellular invasion and cellular destruction
21
Q

CLINICAL SIGNIFICANCE -
SALMONELLA TYPHI

A
  • causes typhoid fever
  • human carriers represent sole source of organisms
  • carriers can be: − convalescents who excrete organism for short period of time− chronic carriers who shed organism for longer than 1 year
  • 3% of all patients become chronic carriers, majority older women with gallbladder disease
  • individuals infected by ingesting food or water contaminated by carrier
22
Q

CLINICAL SIGNIFICANCE - OTHER
SALMONELLAE

A
  • any serotype can cause salmonellosis
  • in contrast to typhoid fever, contaminated animals and animal products major sources of other salmonellae
  • poultry and beef products represent largest sources
  • human carrier serves as source of secondary infections
  • patients with gastroenteritis shed organism for several weeks
  • contaminated food and water vehicles of transmission
  • Gastroenteritis
    − represents actual infection of colon
    − occurs 18 to 24 hours after ingestion of organism− characterised by: diarrhoea, fever, abdominal pain
  • Septicaemia
    − characterised by: fever, chills, anorexia, anaemia
23
Q

Typhoid and enteric fevers Salmonella

A
  • Typhoid fever and other enteric fevers
    − most severe enteric fever caused by serotype Typhi
    −serotypes Paratyphi A and Paratyphi B cause enteric
    fevers with milder symptoms and lower mortality
    − during 1st week of infection symptoms of lethargy,
    fever, malaise, general aches and pains
    −can be confused with variety of other illnesses
    −constipation rather than diarrhoea present
    − during 2nd week symptoms of bacteraemia present
    −infection of biliary tree and other organs occurs
    − patient severely ill with sustained fever, often
    delirious
    −abdomen tender, may have typical rose
    -coloured spots, diarrhoea begins
    −complications include: intestinal perforations,
    bleeding, pneumonia, abscess formation
    − death rate ranges from 2% to 10%
24
Q

COLLECTION, TRANSPORT AND
STORAGE OF SPECIMENS Enteric pathogens

A

specimen of choice: freshly passed stool
* Cary-Blair transport medium preserves best viability of intestinal pathogens, including Campylobacter spp., Vibrio spp.
* blood - best specimen for detection of septicaemia and enteric fevers during 1st week of illness
* 80% of typhoid fever patients have positive blood cultures during 1st week of illness, with only 25% of patients having positive blood cultures by 4th week
* faecal specimens positive in only 25% of typhoid fever patients during 1st week, by 3rd week faeces positive in 85% of all patients
* urine and other specimens (sputum, spinal fluid) appropriate for diagnosis of complications of Salmonella infections

25
Q

CULTURE MEDIA - ENRICHMENT MEDIA Enteric pathogens

A
  • Selenite F broth
    − designed for enrichment of salmonellae, including
    Salmonella Typhi
  • Cold-temperature enrichment
    − used to increase isolation of Yersinia enterocolitica
    −incubation at 4oC for 3 weeks in phosphate-buffered saline before subculture permits survival and growth of this organism, while other bacterial species inhibited
26
Q

CULTURE MEDIA - PLATING MEDIA Enteric pathogens

A

Non-inhibitory media
* 5% sheep blood agar medium

Differential media with little selectivity
* MacConkey agar medium (MC)
− bile salts and crystal violet inhibit growth of gram-positive bacteria and some fastidious gram-negative bacteria
* Eosin methylene blue agar medium (EMB)
− eosin and methylene blue inhibit gram-positive and fastidious gram-negative bacteria

Differential media with moderate selectivity
* Hektoen enteric agar medium (HE)
− high bile salt concentration inhibits growth of all gram-positive bacteria, retards growth of many strains of coliforms
* Xylose-lysine-deoxycholate agar medium (XLD)
− bile salts in relatively low concentration make this medium less
inhibitory to growth of coliform bacilli

Special media
* Sorbitol-MacConkey agar medium (SMAC) − contains 1% D-sorbitol instead of lactose − for detection of verotoxin-producing Escherichia coli serotype O157:H7

  • Cefsulodin-irgasan-novobiocin agar medium (CIN)
    − selective-differential medium for detection of Yersinia enterocolitica
27
Q

INCUBATION CONDITIONS Enteric pathogens

A
  • all media incubated:
    − at 35oC to 37oC
    − for 24 to 48 hours
    − in ambient air
  • CIN agar medium incubated:
    − at room temperature
    − for 48 hours
    − in ambient air
28
Q

IDENTIFICATION of enteric pathogens

A
  • Colony morphology
  • Gram stain of colony
  • Oxidase Test
  • Nitrate reduction Test
  • Biochemical Tests
  • MALDI-TOF MS
  • Serologic Characterisation
29
Q

SEROLOGIC CHARACTERISATION enteric pathogens

A
  • by performing slide agglutination test

Escherichia coli
* based on determination of O and H antigens

Yersinia enterocolitica
* based on determination of O antigens using monovalent O antisera

Shigella spp.
* based on determination of O antigens

Salmonella spp.
* based on determination of O antigens, H antigens, and for Salmonella Typhi also on Vi antigen

30
Q

ANTIBIOTIC SUSCEPTIBILITIES Enteric pathogens

A

Shigella spp.
* ampicillin or amoxicillin
- drug of choice for sensitive isolates

Salmonella species
* ampicillin or chloramphenicol
- drug of choice in cases of enteric fever or septicaemia
* ampicillin
- drug of choice for treatment of chronic carriers of Typhi serotype