Week 2 Flashcards
Describe how B and T cell receptors recognize antibodies
what do each recognize?
B and T cells differ in the type of antigen they recognize
B cells = macromolecules
T cells = peptide fragments of protein antigens and only when these peptides are presented by MHC
Explain how specificities of antibodies are determined
specificity is determined by antigen recognition region (variable region) at the tip of the antibody
how can antibodies have so many ways to recognize antigens?
VDJ Recombination
- random rearrangements of VDJ gene segments –> results in novel AA sequences in antigen binding regions
_____ portion of the heavy chains defines the class of Ab
Fc (trunk)
antigen molecules have different ______
interacts with:
allows for:
epitopes
- interacts with B cell antigen receptors
- allows for expansion of immune responses
what are the 5 isotypes of antibodies?
IgM
IgG
IgD
IgE
IgA
IgM functions
structure
_____ antibody to be secreted
peaks:
good for:
pentameric (soluble) or monomeric (membrane bound)
first
peaks in 7-10 days
good for activating complement, agglutinating pathogens
IgG (_____meric) functions
______ concentration in blood
peaks:
good for:
mono
highest concentration in blood
peaks in 2.5-3 weeks
complement activation, cause antibody dependent cellular cytotoxicity (ADCC)
IgE (_____meric) functions
binds to receptors on ____ cells and activates:
Great for:
mono
mast cells, activates cells to cause histamine release when antigen binds
response to parasites, allergic reactions
IgA (____meric) functions:
can cross ____, ____ immunity
main antibody secreted onto:
great for:
di
epithelium, passive
mucosal surfaces (tears, saliva, mucous, colostrum)
agglutinating pathogens
what are the 4 major functions of antibodies?
1) act as central component of B cell receptors (BCR)
2) neutralization (or blocking) of pathogens and toxins
3) mediate responses to antigen by Fc receptor expressing effector cells
4) activation of the complement cascade
Describe how TCR-MHC-CD4/CD8 work together
T cell receptors bind small ______ presented on either MHC I (_____ + _______ cells) or MHC II (____ + ______)
T cell receptors can only recognize antigens presented on _____
Mechanisms of killing by CD8 T cells
peptides
- MHC I (CD8 + cytotoxic T cells)
- MHC II (CD4 + helper T cells)
MHCs
- perforin/granzyme B
- Fas/FasL mediated killing
Understand TCR-MHC affinity and restrictions
large number of recipient T cells react ______ to foreign MHCs on donor tissues (alloimmune response)
If a transplant contains donor T cells, many of them will react how?
large number of recipient T cells react strongly to foreign MHCs on donor tissues (alloimmune response)
If a transplant contains donor T cells, many of them will react strongly to foreign MHCs on recipient tissues (graft versus host disease)
- MHC-TCR affinity is random - Some T cells will do nothing
- Many T cells with high affinity to MHC will react strongly
how do antibodies mediate responses to antigen by Fc receptor expressing effector cells?
Opsonization: Fc-dependent phagocytosis
1) antibody binds and neutralizes its antigen target
2) antibody then binds to Fc receptors on phagocytes via its constant Fc region
3) binding causes phagocytes to become activated, make oxidative burst, etc
how does antibody dependent cytotoxicity (ADCC) work?
mediated by:
____, _____, and ______ can also mediate ADCC
1) antibodies bind antigens on the surface of target cells
2) natural killer cell CD16 Fc receptors recognize cell-bound antibodies
3) cross lining of CD16 triggers degranulation into a lytic synapse
4) tumor cells die by apoptosis
perforin and granzyme
macrophages, neutrophils, eosinophils
how do antibodies activate complement/classical pathway?
initiated by binding of the C1 complex to antibody antigen complexes
only IgM and IgG can activate complement
how do antibodies activate complement/classical pathway?
initiated by binding of the C1 complex to antibody antigen complexes
only IgM and IgG can activate complement
T cells have both a _____ and _____ region
constant
variable
- each T cell receptor chain has 3 CDRs, thus highly diverse, allowing T cells to recognize millions of different peptides
Naive T cell maturation flow chart:
naive T lymphocyte –> CD4
or CD8
CD4 –> T helper or T regulatory (CD4, CD8, CD25)
CD8 –> cytotoxic T cell or T regulatory (CD4, CD8, CD25)
T helper cell function
activate cytotoxic T cells and B cells
T regulatory cell function
help distinguish between self and non self, prevent autoimmune diseases
what happens during T cell activation?
cytokines secreted due to interaction between PAMPs and PRRs
these cytokines drive the differentiation of the T cell response into appropriate effector T cell for that infecting pathogen
1) antigen presented on MHC –> starts activation of T cells
2) when T cells are activated by presented antigen, T cells secrete IL2 –> leads to proliferation of T cell that can recognize specific antigen –> can secrete different types of cytokines
depending on what cytokines are secreted, T cells can make appropriate effector cells that can get rid of pathogens
how do super-antigens work?
what is the resulting cascade of events?
some bacterial and viral proteins bind to MHC class II outside the peptide binding site and to T cell receptors
this leads to non specific T cell activation
Massive IFN gamma release –> large sacle macrophage activation –> massive TNF alpha release (cytokine storm) –> vasodilation, vascular leak, shock, organ failure
Travelers’ Diarrhea
clinical features:
- large:
- can lead to:
- other symptoms:
pathogenesis:
- _____ mediated colonizatio of ______
- secretion of _____
- _____ mediated _____ and _____ loss
- low or no _____
- anbsence of ____ in stool
viruses:
bacteria: Most ecoli:
- pathogenic?
- normal or not normal flora?
- commensal/pathogenic?
protozoa:
how to prevent:
clinical features:
- large volume watery stools without inflammatory cells or blood
- can lead to dehydration
- nausea, vommiting, bloating, colicky abdominal pain
pathogenesis:
- fimbriae mediated colonization of intestine
- secretion of enterotoxin (LT and ST without tissue damage)
- toxin mediated fluid and electrolyte loss
- low or no fever
- absense of neutrophils in stool
viruses
- rotavirus
- norovirus
- adenovirus
bacteria
- Ecoli: non pathogenic, part of normal flora, commensal
- vibrio cholerae
protozoa
- giardia
- cryptosporidium
prevention: boil, cook
Inflammatory or Bloody Diarrhea:
Clincial features:
- frequent ______, amy have:
- symptoms:
- from:
- ______ also from poultry
- HUS:
- For HUS, ___ nto used
complications:
pathogenesis:
- damage to ____ with _____
- direct ____ and _____ damage
- _______ invasive
viruses:
Bacteria: (shigella)
- variant of:
- what route?
- low/high infectious dose?
protozoa:
Clincial features:
- frequent small volume stools, may have streaks of blood, mucosy from pus
- symptoms: pain on defication, ileocolitis, colitis, fever
complications:
- hemolytic uremic syndrome
pathogenesis:
- damage to enterocytes with local inflammatory responses
- direct invasion and cytotoxin damage
- locally invasive
viruses:
- none in immunocompetent
Bacteria:
- shigella (a varient of ecoli, fecal oral, very low infectious dose)
- shiga toxigenic
- ecoli
- EIEC
- campylobacter jejuni
- non typhi salmonella
- yersinia
protozoa:
- entamoeba histolytica
Antibiotic Associated Diarrhea
complications:
pathogenesis:
- most commonly associated with:
- mild or sever? requires treatment?
- what do antibiotics do?
- _____ produces toxins that damage colonic mucosa and are proinflammatory
viruses:
bacteria:
protozoa:
complications:
- C. difficile - pseudomembranous colitis, toxic magacolon, sepsis
pathogenesis:
- most commonly associated with: fluoroquinolones, cephalosporinsm penicillin, clindamycin
- mild, generally doesn’t require treatment
- antibiotics kill normal flora and may afffect gut absorptive functions, C.
- C. difficile
viruses: none
bacteria:
- C. difficile in the context of antibiotic damage to normal microbiota
protozoa: none
Intoxication
comes from:
clinical features:
- ______ poisoning
- symptoms:
- onset:
- contagious?
- duration?
- _____ contaminated with ______ may not:
- are antibiotics effective against these toxins? what is the treatment?
pathogenesis:
viruses
bacteria
protozoa
comes from: contaminated food
clinical features:
- food poisoning
- nausea, vomitting, followed by diarrhea
- rapid onset in hours after digestion
- not contagious
- short duration
- food contaminated with staph toxin may not smell or look spoiled
- antibiotics not effective, oral IV/rehydration
pathogenesis: preformed toxins made by bacteria
viruses: none - mimicked by norovirus
bacteria
- staph aureus enterotoxins
- bacillus cereus enterotoxins
protozoa: none
Enteric fever/Typhoid fever
pathogenesis:
- most people in US become infected how?
- how effective are vaccines?
- are there carriers?
- how is it spread?
- survives in ____
- may reseed the _____ and transmit through:
- survives in:
viruses:
bacteria:
protozoa:
____ are only reservoir
pathogenesis:
- most people in US become infected how? while traveling abroad
- how effective are vaccines? partially effective, booster needed in high risk group
- are there carriers? chronic carriers, not common but are capable of infecting others
- how is it spread? systemically
- survives in macrophages
- may reseed the bowel and transmit through: feces
- survives in: lymph nodes, liver, spleen, bone marrow, gall bladder
viruses: none
bacteria:
- salmonella typhi
- para typhi
- listeria
- brucella
- non typhi salmonella
- yersinia
protozoa: none
humans are only reservoir
Salmonella gastroenteritis/Salmonella enterica
_______ most common cause of:
____ production, inflammatory ____ - beneficial to salmonella because of:
________ hosts can develop:
salmonella enterica serovar typhi, salmonella infection in the US
cytokine production, inflmmatory colitis - beneficial to salmonalla because of eliminating many commensal bacteria
immuno compromised hosts can develop bacteremia, spetic arthritis, meningitis
Vibrio Cholerae
need a large/small number of bacteria to cause disease
_____ but not ______ state of survival in gastric acid
large inoculum aids in ______, subsequent:
_____ - watery diarrhea
_____ environmental reservoir
_______ and ______ can cause gastroenteritis in humans from shellfish
a few strains of Vibrio cholerae are highly ______ and cause ______
large
viable, nonculturable
survival, colonization of small intestine
enterotoxin
aquatic
adapted to the human host, causes outbreaks, epidemics, and pandemics
Campylobacter
post infection sequelae: (3)
reactive arthritis
irritable bowel syndrome
guillian barre syndrome (body’s immune system attacks own nerves, cause unknown - associated with COVID 19 and zika)
Does H pylori cause cancer?
____-____ of gastric cancer associated with H pylori
H pylori second only to _____ as a defined cause of cancer
transmission?
70-75%
smoking
transmitted within families
- gastric-oral
- oral-oral
- oral-fecal
How does H pylori survive in the stomach? (acidic environemnt)
- most abundant protein in H pylori is:
- what does this do?
- what can be used as a diagnostic test for H pylori?
Urea breath test only works if:
_____ is a common diagnostic tool
_____ test is another tool, needs high H pylori for this to wor
H pylori and Immune tolerance:
- ____ modified to avoid triggering ____
- _____ mutated to avoid _____
- _____ coated with sugar to mimic _____
- urease
- urease breaks down host derived urea into carbonic acid and ammonia which can locally neutralize gastric acid
- urease activity can be used as a diagnositc test (urea breath test)
H pylori is active
culturing of a gastric biopsy specimen
fecal Ag test
- LPS, TLR-4
- flagella, TLR 5
- O-antigens coated with sugar to mimic blood group Ags
Who is at risk for H pylori disease? (bacterial factors)
- what are the two factors and what do they do?
CagA
- Protein secreted into the
target epithelial cell - Triggers reorganization
of actin cytoskeleton - Disrupts cell signaling
VacA alleles
- Causes apoptosis of gastric epithelial cells
- Induces inflammatory cytokines
what are the respiratory infection causing gram negative bacteria?
1) Haemophilus influenzae
2) Bordetella pertussis
3) Legionella pneumophila
4) Chlamydia pneumoniae
5) Mycoplasma pneumoniae
Respiratory Infection-causing Gram-negative Bacteria: Haemophilus influenzae
_____ flora in ______ of 20-80% of healthy adult populatio n
causes:
peak incidence:
most virulent strains have:
normal flora in nasopharynx of 20-80% of healthy adult populatio n
causes:
- meningitis
- pneumonia
- bronchitis
- otitis media
peak incidence: 6mon-2yr age group
most virulent strains have: polysaccharide capsule
Respiratory Infection-causing Gram-negative Bacteria: Bordetella pertussis
causitive agent of:
production of ______ toxin
whooping cough
pertussis
Respiratory Infection-causing Gram-negative Bacteria: Legionella pneumophila
reservoir:
________ disease, ____ fever
no _____ to ______ transmission
Reservoir: Rivers/streams/amebae; Air-conditioning water-cooling tanks
Legionnaires disease (Atypical pneumonia); Pontiac fever
No human-to-human transmission
Respiratory Infection-causing Gram-negative Bacteria: Chlamydia pneumoniae
causes:
most common in:
Atypical pneumonia
Most common in school-aged children (mild pneumonia or bronchitis)
Respiratory Infection-causing Gram-negative Bacteria: Mycoplasma pneumoniae
causes:
mild/sever illness –> ______ pneumonia
Atypical pneumonia
Mild illness - “Walking pneumonia”
what results/causes pneumonia in general?
Disrupting or overwhelming these defense mechanisms can allow microbes to colonize the lungs, resulting in PNEUMONIA
defense mechanisms:
- Mucous entrapment
- Ciliary clearance
- Immune surveillance
- Intact epithelial barrier
- Secreted factors such as:
- Secretory IgA
- Surfactant proteins (SP-a, SP-d)
- Defensins
typical community aquired pneumonia
- presents with ______ infection
- infectious agent is or is not culturable/identifiable
- responsive to _______ antibiotics
- main species responsible:
atypical community aquired pneumonia
- presentation:
- causitive pathogens are easy/difficult to culture/identify?
- species responsible:
typical community aquired pneumonia
- presentation: typical, severe, acute infection
- infectious agent is culturable/identifiable
- responsive to cell wall active antibiotics
- Streptococcus pneumoniae; Haemophilus influenzae
atypical community aquired pneumonia
- Presentation is usually sub-acute
- Causative pathogens are difficult to culture/identify by standard methods
- Mycoplasma pneumoniae (Lacks CW, so not responsive to penicillin); Legionella pneumophila; Chlamydia pneuminiae
Cell structure of Fungi
similar to _____
cell membrane with _____
____ cell wall with ____, _____, and ______
beta glucans
- produces _____ that stimulates ______
similar to eukaryotes
cell membrane with ergosterol
rigid cell wass with mannan, beta glucans, chitin
beta glucans produce endotoxin like substances that stimulate the immune system
what are the common commensal fungi on humans?
Candia albicans a common
commensal of mucosal
surfaces
Malassezia furfur a common
commensal of the skin
Aspergillus fumigatus:
______ pathogen that causes:
opportunistic or pathogenic?
Environmental pathogen that causes allergic aspergillosis and/or severe invasive pulmonary disease in neutropenic patients - hemorrhagic necrosis in the lung
opportunistic
Candida:
______ yeast on _______ membrane
opportunistic or pathogenic?
causes:
Commensal yeast on mucous
membrane
Opportunistic
- Oral thrush: IC host
- Perleche/Angular cheilitis: Corners of mouth
- Esophagitis: AIDS-defining illness in HIV-infected individuals
- Endocarditis: IV drug abusers
- Yeast vaginitis
Cryptococcus neoformans
_______ _______ yeast
when inhaled, can cause:
patients with ______ defects are at high risk to develope severe ______
Encapsulated environmental yeast
When inhaled, can cause disseminated disease with predilection to the brain
Patients with CD4 T cell defects are at high risk to develop severe meningo-encephalitis
Histoplasma capsulatum, Blastomyces dermatitidis, & Coccidioides immitis
occur in what locations?
Infectious conidia are inhaled but can _________ and cause systemic disease
Occur in specific geographic locations (endemic)
Infectious conidia are inhaled but can disseminate and cause systemic disease
Histoplasma capsulatum
_______ flu
does it resolve on its own or with help?
fungus
self resolve
Blastomyces dermatitidis
acute and chronic ________ disease
does it self resolve?
pulmonary
less likely to self resolve
Coccidioides immitis
known as:
common where?
also known as
can cause systemic infections in what types of patients?
who else is a vulnerable population?
can lead to:
valley fever
south west US
desert bumps
systemic infections in AIDS and immunocompromised patients
pregnant women in 3rd trimester
oral lesions
Parastitic infections: Entamoeba leads to:
dysentery
parasitic infections: Giardia, Cryptosporidium leads to:
Traveler’s diarrhea
parasitic infections: trichomonas causes
STD: vaginitis, urethritis
parasitic infections: plasmodium causes
malaria
parasitic infections: Trypanosomes causes
Infect blood; Chagas disease,
African sleeping sickness
parasitic infections: Leishmania causes
Infect bone marrow, liver, spleen
parasitic infetions: Toxoplasma causes
CNS infection, encephalitis