Week 8 Flashcards

DNA Cloning

1
Q

when are recombinant proteins formed

A

when DNA from one species is transplanted into another species

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2
Q

where are restriction enzymes present

A

in prokaryotes

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3
Q

what is the purpose of restriction enzymes in their natural hosts

A

to recognize foreign DNA sequences and cut it into pieces for further degradation by host exonucleases

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4
Q

what was the first therapeutic product to be synthesized using recombinant DNA

A

insulin

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5
Q

what type of DNA sequences do restriction enzymes recognize

A

inverted palindromic sequences

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6
Q

what are the type of cleavage ends

A
  • blunt ends
  • sticky 5’ ends
  • sticky 3’ ends
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7
Q

in which direction is the recognition site read

A

5’ to 3’

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8
Q

define: electrophoresis

A

the movement of charged molecules in an electric field

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9
Q

how does gel electrophoresis distinguish DNA fragments

A

size

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10
Q

what do restriction maps show

A

the order of different size fragments within a clone

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11
Q

define: vector

A

specialized chromosome-like carrier used for cloning

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12
Q

define: DNA clone

A

vectors with inserts that are replicated in cells

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13
Q

what is a common type of vector

A

plasmids

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14
Q

what specialized regions do vectors contain

A
  • origin of replication
  • multiple cloning site
  • selectable marker
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15
Q

define: multiple cloning site

A

region with several unique restriction enzyme recognition sites

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16
Q

how large are plasmids

17
Q

how large can inserts in plasmids be

A

up to 15 kb

18
Q

what connects vector and DNA fragment

19
Q

what are the products of ligation

A
  • linear vector
  • linear inserts
  • circular vector
  • circular insert
  • vector plus insert
  • vector plus multiple inserts
20
Q

how do you determine which plasmids contain inserts for E. coli

A

put them in a media that has ampicillin and X-gal

21
Q

what des ampicillin resistance indicate for cloning

A

there is a plasmid

22
Q

what do white colonies in a media with X-gal indicate

A

recombinant plasmid, they disrupt transcription of lacZ
plasmids with no insert are blue

23
Q

what does YAC stand for

A

yeast artificial chromosomes; linear vectors built to mimic a yeast chromosome

24
Q

how large of inserts can YACs carry

A

up to 1 million base pairs

25
how do you retrieve the clone from the plasmid
digest with restriction enzyme and separate by gel electrophoresis
26
define: prions
proteinaceous infectious particles
27
what is mad cow disease and scrapie caused by
prions
28
define: genomic library
a collection of DNA clones that theoretically contains copies of every DNA fragment in the whole genome
29
define: complimentary DNA library
DNA sequences that have been copied from mRNA transcripts; only contain the exon sequences
30
what converts mRNA to cDNA
reverse transcriptase
31
what are the differences between genomic libraries and cDNA libraries
genomic: - contain all sequences - same info for every cell type of that organism - used for prokaryotes or sequencing projects cDNA: - only contains exon sequences - conditional upon cell type - used for eukaryotes