Zachara_glycobiology Flashcards

(47 cards)

1
Q

what are three essential properties of glycans

A

They are hydrophilic, hydrated, and often negatively charged

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2
Q

name three glycoconjugates in vertebrates

A

glycoproteins, glycolipids, and proteoglycans

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3
Q

what are 9 most common monosaccharide building blocks

A

glucose, galactose, GalNAc, GlcNAc, mannose, fucose, xylose, sialic acid, GlcA, IdoA

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4
Q

two other names for carbohydrates

A

glycans, sugars

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5
Q

a non-carbohydrate moiety

A

aglycone, covalently linked to the glycone

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6
Q

humans use glycolipids built exclusively on…

A

sphingosine, aka glycophingolipids

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7
Q

glycosaminoglycans

A

long repeating charged disaccharides that when linked to proteins become proteoglycans

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8
Q

a glycosaminoglycan that is rarely found bound to proteins

A

hyaluronan

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9
Q

a protein covalently modified by 1+ carbs

A

glycoprotein

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10
Q

glycocalyx

A

dense, sugary coat of cells/tissues

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11
Q

3 key roles of surface glycoproteins

A

cell adhesion, self/non-self recognition, pathogen invasion

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12
Q

the carbon in sugars which undergoes nucleophilic attack to become circularized

A

carbon 1 , or the anomeric carbon

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13
Q

T/F. All common monosaccharides in vertebrates have the same chirality - dextrarotatory (D) configuration

A

True

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14
Q

3 common modifications of sugar hydroxyl groups

A

sulfate, phosphate, or acetyl groups

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15
Q

difference between glucose and galactose

A

one single position of a bond at carbon 4

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16
Q

name 4 features which contribute to polysaccharide diversity

A

linear vs branched structure, alpha or beta configuration of anomeric carbon, aglycone attachment, and linkage position of each monomer to the next sugar

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17
Q

where do monosaccharides come from (3)

A

diet, salvage from degraded glycans, or derived from other sugars

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18
Q

two classes of sugar transporters

A

facilitated diffusion (GLUT) and energy dependent

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19
Q

how are carbohydrates added to nucleotides

A

through high energy phosphate bond, generate ATP analog. typical conjugation partners are UDP-, GDP-, and CDP

20
Q

where are glycoconjugates synthesized

A

ER and golgi, sugar nucleotides pulled in from the cytoplasm by transporters

21
Q

class of enzymes which catalize glycoconjugation

A

glycosyltransferases

22
Q

these two residues terminate most glycoprotein and glycolipid glycons

A

fucose and sialic acid

23
Q

influenza surface proteins and their connection to glycans

A

hemagglutinin, initiates flu infection by binding to cell-surface sialic acids to keep newly made virus from sticking to it, neuraminidase removes sialic acids on soluble mucins that would prevent cell-surface binding of invading virus

24
Q

how does a cell get rid of unwanted extracellular glycoproteins and proteoglycans (2)

A

either shed from cell surface, or internalized and degraded in the lysosome

25
how are glycosphingolipids classed?
based on first sugar added to sphingosine - either galactose or glucose
26
two ways glycolipids mediate cell-cell interactions
either through binding to complementary molecules on opposing plasma membranes (trans) or modulating activities of proteins in same plasma membrane (cis)
27
myelin
insulator that allows for rapid nerve conduction
28
N-linked glycans
glycan linked to protein through an amide bond to an asparagine residue
29
sequence motif of N-linked glycan
Asn-Xaa-Ser/Thr (Xaa is any AA but proline)
30
O-linked glycans
glycan linked to protein through hydroxyl on serine/threonine residues (but also sometimes proline, lysine or tyrosine)
31
GPI anchors
lipid linked to protein through glycan intermediate, way to anchor proteins to the plasma membrane
32
N-glycan core sugar sequence
Man3GlcNAc2Asn
33
three types of N-glycans
oligomannose, complex, hybrid
34
14-sugar glycan transferred to proteins during translation
precurser dolichol phosphate
35
mucin-type o-glycans
shield epithelial surfaces from physical/chemical damage and protect against pathogen infections. huge proteins, more than 50% sugar by weight. attract water and form gels
36
congenital muscular dystrophies linked to mutations in this biosynthetic pathway
O-mannosylation- mannose modification of certain proteins improves their solubility and trafficking to cell surface (ex alpha-dystroglycan, glycoprotein connecting ECM to cytoskeleton in many tissues)
37
two functions of glycan binding proteins
mediating cell adhesion and regulating signaling
38
two groups of GBPs
lectins and glycosaminoglycan binding proteins
39
selectin role in inflammation and injury
injury increases expression of selectins, which slow down leukocyte circulation and mediate rolling and chemotaxis into tissue to migrate towards the site of injury
40
A, B, O blood type antigens formed by...
sequential action of glycosyltransferases encoded by 3 loci
41
how is O-GlcNac different than other forms of protein glycosylation
it is adding in an O-linked fashion, but is not further extended - it is instead dynamically added and removed from proteins like how protein phosphorylation is
42
how is O-GlcNac thought to regulate proteins
can compete with phosphorylation, regulation analagous to phosphorylation regulation
43
T/F. Glycans dominate cell surfaces
Totally true
44
how do proteins recognize glycans? (5)
h-bonding, salt-bridges, hydrophobic stacking, calcium coordination, multivalency
45
how does heparin anticoagulant work
thrombin cleaves fibrinogen to soluble fibrin, which starts to stick together. thrombin then becomes inhibited by antithrombin protease. heparin binds to antithrombin, accelerating inhibition and blocking coagulation
46
5 forms of protein glycosylation
N-linked, O-linked, GPI-anchors, C-mannosylation, and phosphoglycosylation
47
4 ways glycans can change a glycoconjugate
alter structure, localization, turnover, and interactions