8 Gene expression: 21 Recombinant DNA Technology Flashcards

1
Q

What does recombinant DNA technology involve?

A

The transfer of fragments of DNA from one organism, or species, to another.

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2
Q

Why can tranferred DNA be translated within cells of the recipient organism?

A

The genetic code is universal, as are transcription and translation mechanisms.

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3
Q

List the different methods to produce fragments of DNA.

A
  • conversion of mRNA to complementary DNA, using reverse transcriptase
  • using restriction enzymes to cut a fragment containing the desired gene from DNA
  • creating the gene in a ‘gene machine’
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4
Q

What are organisms that contain transferred DNA called?

A

Transgenic organisms.

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5
Q

Decribe the process of using reverse transcriptase to produce DNA fragments.

A
  1. mRNA is isolated from cells.
  2. The mRNA is mixed wih free DNA nucleotides and reverse transcriptase.
  3. The reverse transcriptase used the mRNA as a template to synthesise a new strand of complementary DNA.
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6
Q

Describe the process of using restriction enzymes to produce DNA fragments.

A
  1. Restriction endonucleases cut DNA at specific recognition sites.
  2. The DNA sample is incubated with specific restriction endonucleases to cut the desired DNA out.
  3. Sticky ends are produced which anneal to other DNA fragments with sticky ends by complementary base pairing.
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7
Q

Describe the process of using a ‘gene machine’ to produce DNA fragments.

A
  1. The required sequence is designed or taken from a database.
  2. The first nucleotide is fixed to some sort of support (e.g. a bead).
  3. Nucleotides are added step by step.
  4. Protecting groups are added as well to prevent unwanted branching.
  5. Oligonucleotides (short sections of DNA) are produced.
  6. The oligonucleotides are broken off the support and the protecting groups are removed. They are joined together to make longer DNA fragments.
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8
Q

Describe the process of amplifying DNA fragments by in vivo techniques.

A
  1. The DNA fragment is isolated using restriction endonuclease and inserted into vector DNA.
  2. The vector DNA is cut using the same restriction endonuclease so the sticky ends are complementary to eachother.
  3. The vector DNA and DNA fragment are mixed with DNA ligase so the sticky ends join, producing recombinant DNA.
  4. Host cells take up the vectors with recombinant DNA.
  5. Marker genes can be inserted with the desired gene.
  6. Promotor and terminator regions are added along with the DNA fragment so the transformed host cells can produce the protein.
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9
Q

What is a vector?

A

Something that’s used to transfer DNA into a cell.

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10
Q

How are marker genes used in in vivo amplification of DNA fragments?

What can the different marker genes code for and how can you distinguish

A
  1. Marker genes are inserted into vectors as well as the desired gene.
  2. Host cells are grown on agar plates and transformed cells will contain the desired gene and marker gene.
  3. The marker gene could code for antibiotic resistance so host cells grown with the specific antibiotic will die so only transformed cells will survive.
  4. The marker gene could also code for fluorescence so only transformed cells will fluoresce under UV light.
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11
Q

Describe the process of amplifying DNA fragments using in vitro techniques.

Polymerase chain reaction.

A
  1. A reaction mixture is set up containing the DNA sample, free nucleotides, primers, and DNA polymerase.
  2. The DNA mixture is heated to 95C to break the hydrogen bonds between the two strands of DNA.
  3. The mixture is then cooled to 50-65C so that the primers anneal to the DNA strands.
  4. The reaction mixture is heated to 72C so DNA polymerase can work.
  5. The DNA polymerase lines up free DNA nucleotides alongside each template strand, by complementary base pairing, and joins adjacent nucleotides.
  6. Two new copies of the DNA sample are formed, completing one cycle of PCR.
  7. The cycle starts again, with all four strands being used as template strands.
  8. Each PCR cycle doubles the amount of DNA.
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12
Q

What are primers?

A

Short pieces of DNA that are complementary to the start of the desired DNA fragment.

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13
Q

What are the benefits and concerns of using recombinant DNA technology in agriculture?

A

+ crops can be transformed so they give higher yields or are more nutritious
+ reduces the risk of famine and malnutrition
+ pest resistance so fewer pesticides needed, reducing costs and environmental problems associated with pesticides

  • monoculture could happen, making the whole crop vulnerable to the same disease and reducing biodiversity
  • herbicide resistant weeds could grow if transformed crops interbreed with wild plants, leading to uncontrolled spread of recombinant DNA, with unknown consequences
  • organic crops can be contaminated by wind-blown seeds from GM crops so farmers can’t sell their crop as organic and lose income.
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14
Q

What are the benefits and concerns of using recombinant DNA technology in industry?

A

+ enzymes used in industrial processes can be produced from transformed organisms, so large quantities are produced for less money, reducing costs

  • as the use of this technology increases, big companies become more powerful, forcing smaller companies out of business
  • without proper labelling, people may think they don’t have a choice about whether to consume food made using GM organisms
  • some consumer markets won’t import GM foods and products, causing an economic loss to producers.
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15
Q

What are the benefits and concerns of using recombinant DNA technology in medicine?

A

+ many drugs and vaccines can be made quickly, cheaply, and in large quantities using recombinant DNA technology

  • companies who own genetic engineering technologies may limit the use of technologies that could be saving lives.
  • people may worry that the technology could be used unethically (e.g. designer babies)
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16
Q

What are the humanitarian benefits of using recombinant DNA technology?

A

+ agricultural crops could help reduce famine and malnutrition
+ transformed crops could be used to make vaccines and drugs available to more people
+ medicines could be produced more cheaply, so more people can afford them
+ gene therapy can treat human diseases.

17
Q

How is recombinant DNA technology used in gene therapy?

A
  • defective genes are altered by adding or silencing alleles
  • alleles are inserted into cells using vectors, like in recombinant DNA technology
18
Q

How are labelled DNA probes and DNA hybridisation used to locate specific alleles of genes?

A
  • DNA probes are complementary to the target allele so will hybridise (bind) to the target allele if it’s present in a DNA sample
  • a radioactive or fluorescent label is attached to the DNA probes so they can be detected.
  • radioactive label is detected by X-ray film
  • fluorescent label is detected by UV light
19
Q

How is screening using DNA probes used?

A
  1. To help identify inherited conditions
  2. To help determine how a patient will respond to specific drugs
  3. To help identify health risks
20
Q

How are the results of a screening used in genetic counselling?

A
  • people are advised about screening the results are explained
  • people can find out if they’re a carrier, the type of mutated allele they’re carrying, and the most effective treatment
21
Q

How are the results of a screening used in personalised medicine?

A
  • certain drugs are more effective for some people than others
  • medicines can be tailored to an individual’s DNA
  • doctors can prescribe the most effective drugs based on genetic information
22
Q

What are VNTRs and where are they found? How are they different in each organism?

A

Variable number tandem repeeats - base sequences that don’t code for proteins and repeat over and over.

Found in the genome.

The number of repeats is different from organism to organism.

23
Q

Describe the process of genetic fingerprinting.

Gel electrophoresis

A
  1. A sample of DNA is obtained.
  2. PCR is used to make many copies of DNA sequences that contain VNTRs.
  3. A fluorescent tag is added to all the DNA fragments so they can be viewed under UV light.
  4. The DNA mixture is placed into a well in a slab of gel and covered in a buffer solution that conducts electricity.
  5. An electrical current is passed through the gel - DNA fragments are negatively charged so they move towards the positive electrode at the other end of the gel.
  6. Smaller DNA fragments move faster and travel further.
  7. The DNA fragments are viewed as bands under UV light - the genetic fingerprint.
  8. Genetic fingerprints can be compared.
24
Q

How is genetic fingerprinting used in determining genetic relationships?

A
  • VNTR base sequences are inherited from parents
  • the more bands on a genetic fingerprint that match, the more closely related two people are
25
Q

How is genetic fingerprinting used in determining genetic variability within a population?

A
  • the greater the number of bands that don’t match on a genetic fingerprint, the more genetically different people are
26
Q

How is genetic fingerprinting used in forensic science?

A
  • samples of DNA collected from crime scenes can be compared to samples of DNA from possible suspects
27
Q

How is genetic fingerprinting used in medical diagnosis?

A
  • a genetic fingerprint can refer to a unique pattern of several alleles
  • can be used to diagnose genetic disorders and cancer
28
Q

How is genetic fingerprinting used in animal and plant breeding?

A
  • can be used to prevent inbreeding
  • inbreeding decreases the gene pool, increases the risk of genetic disorders, leading to health, productivity, and reproductive problems
  • the least related individuals will be bred together