Advanced analytical techniques Flashcards

1
Q

what is Spectrophotometry

A

measure how much a chemical substance absorbs light by measuring the intensity of light as a beam of light passes through sample solution.

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2
Q

What is Calorimetry

A

measuring the amount of heat released or absorbed during a chemical reaction. By knowing the change in heat, it can be determined whether or not a reaction is exothermic (releases heat) or endothermic (absorbs heat).

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3
Q

How does a Spectrofluorimetric assay determine the formation of a product?

A

The formation of product or reduction of reactant concentration is measured by attaching a moiety that fluoresce at defined wave lengths an example being Dibutyryl Fluorescein which is injected into the patients veins and due to the action of lipase becomes Flurescein which is fluorescent.

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4
Q

How would you use Spectrofluorimetric Bioluminescent enzyme Assay to measure antibody dependent cell-mediated cytotoxicity (ADCC)?

A

Assay quantitatively measures release of Glyceraldehyde- 3-Phosphate Dehydrogenase (GAPDH) which is released during apoptosis. Further in this reaction luciferase catalyses luciferin to release light which is then measured. (indirect measurement of GAPHD)

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5
Q

What is Manometer?

A

Records a reduction in conc/ and increase in gaseous release ( useful for measure enzyme activity if one of the component is in gaseous form)

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6
Q

Describe how Manometry technique would be carried out?

A
  • The samples and reagents are placed in separate compartments and mixed at defined time period and the reaction can be followed as the reaction proceeds.
  • Eg: Oxygen consumption is measured in glucose oxidase, Carbon-dioxide production
    produced in reactions catalysed by decarboxylases
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7
Q

What is Enthalpimetry ?

A

Measures the enthalpy change during the course
of a reaction

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8
Q

What conditions would you need for an enthalpimetry measurement and why?

A
  • Requires high sensitivity and a closed circuit with a net entropy of 0 so that minute changes can be recorded.
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9
Q

How would you use Radiochemical methods for an enzyme assay?

A

Radioactively labelled substrate is used to follow the enzymatic reaction

The substrate is then separated from the product using electrophoresis or chromatography and the radioactive fraction of the product or the substrate is used to estimate activity of the enzyme.

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10
Q

What is the function of a Lipase and how is it produced in an industrial scale?

A

Breaks down Fat and is taken from Animal pancreases

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11
Q

What is the function of Trypsin and how is it produced on an industrial scale

A

Trypsin helps break down protein within small intestine and is sourced through Ox bile within industry

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12
Q

What is the function of Urokinase and how is it produced within industry?

A

Urokinase (made in kidney) converts inactive plasminogen into active plasmin and is sourced from Cow urine and human plasma within industry.

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13
Q

What is a Lysozyme, where can it be found within the body and how is it produced within industry?

A

Lysozyme is an antimicrobial agent that acts by cleaving the peptidoglycan component of bacterial cell walls, which leads to cell death.

This can be found within bodily secretions such as tears, saliva, and milk, within industry this is sourced from transgenic plants, animals and microorganisms that can produce human lysozyme

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14
Q

What is Adenosine Deaminase function, where is it sourced and how can it be produced within industry?

A

eliminates deoxyadenosine, which is a product of DNA breakdown which is toxic to lymphocytes.
This is produced in all cells but higher levels in lymphocytes and can be sourced from Bovine intestine.

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15
Q

What is pepsin’s function, where is it sourced and how can it be produced within industry?

A

An enzyme that breaks down proteins in food during digestion within the stomach, this can be sourced from Hog pancreas.

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16
Q

What is Dornase α

A

Is an inhaled medication (synthetic deoxyribonuclease) that thins mucus. Reduce the number of lung infections and to improve lung function in patients with cystic fibrosis by breaking down extracellular DNA in the lungs which coats bacteria.

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17
Q

What is Beta lactamase function and bacterial source?

A

One of the most important groups of antibiotics prescribed for antibacterial treatment today which can be found within Staphylococci sp

They stop bacterial growth by inhibiting PBPs ( Penicillin-binding proteins) that are indispensable for the cross-linking process during cell wall biosynthesis.

Mutations of β-lactamase active site may lead to antibiotic resistance through ineffective binding and thus, reduced inhibition.

18
Q

What is Staphylokinase function and bacterial source?

A

Activates plasminogen to form plasmin, which digests fibrin clots.

Can be found within staphylococci sp.

19
Q

What is the function of Rhodanese and bacterial source?

A

Main enzyme in sulfur metabolism for cyanide detoxification & anti-oxidative stress systems.

Can be found within Sulfobacillus sibiricus

20
Q

What is the function of Streptokinase and bacterial source?

A

Dissolve blood clots that have formed in the blood vessels.
Plasminogen - plasmin
Used to treat blood clots in the lungs (pulmonary embolism) and in the legs (deep venous thrombosis).

Found within hemolytic streptococci.

21
Q

What is the function of L-aspariginase and what is it used to treat? What bacteria can you find this in?

A

Catalyses the hydrolysis of the non-essential amino acid L-asparagine to L-aspartate and ammonia.

Used for the treatment of haemopoietic diseases such as ALL (acute lymphoblastic leukaemia).

Found within E.coli

22
Q

What is the function of collagenase and which bacteria can it be found in?

A

Break the peptide bonds in collagen, assist in destroying extracellular structures in the pathogenesis of bacteria such as Clostridium

23
Q

What is the function of Amylase, how is it used for treatment and which bacteria can it be found in?

A

Help’s you digest carbohydrates, it is used when the pancreas cannot make or does not release enough digestive enzymes into the gut to digest the food.

24
Q

Give me an example of when you would use fluorescent enzyme assay?

A

Inject Fluorescein into the patient, this will then be lysed by lipase to Flurescein which is flurecent, a blood sample is taken and this will indicate.

Acute pancreatitis - increased Lipase in the system because its escaping from pancreas.

25
Q

Why are bio-catalysed the preferred method for catalyzation.

A

They can omit a range of chemical steps due to the enzyme directly leading to the product we need.

They provide a green alternative for a chemically based system.

26
Q

What reactions do Baeyer-Villiger monooxygenases (BVMOs) catalyse.

A

They catalyse the formation of Lactones from Ketones they are key to biosynthesis.

27
Q

Explain the Parthenogenesis of Farbry’s disease.

A

Fabry disease is a rare genetic disease a deficiency of the enzyme
alpha-galactosidase A (a-Gal A) that causes a buildup of a type of fat called
globotriaosylceramide (Gb3, or GL-3) in the body.

An effected person doesn’t have the enzymes that break down lipids or fats. These fats collect in blood vessels and tissue.

28
Q

What enzyme deficiency leads to Fabry’s disease

A

alpha-galactosidase A (a-Gal A)

28
Q

Gauchers Disease

A

Autosomal recessive inherited disorder of
metabolism where a type of fat (lipid) called glucocerebroside cannot
be adequately degraded.
Spleen and liver build up

29
Q

What type of disease is Gauchers Disease, Fabry’s Disease?

A

Lysosomal storage Diseases

30
Q

What is Sarcosidase a treatment for?

A

Taken orally to treat congenital sucrase-isomaltase deficiency
(CSID)
(Enables sucrose hydrolysis)

31
Q

What is Phenylase a treatment for?

A

Used for the treatment of PKU- deficiency of phenylanine

Type of hydroxylase which converts Phenylalanine to Tyrosine

32
Q

What type of therapies are Sarcosidase, Phenylase and Pulmozyme (Dornase α)

A

Oral and inhalable therapy

33
Q

What is the function of Asparaginase and what is its therapeutic use.

A

reduces the availability of asparagine, an amino acid that is necessary for the growth of some tumor cells.

Used for leukaemia treatment.

34
Q

What is the function of Collagenase and therapeutic use?

A

Cleaves collagen, which is useful in removing skin ulsers.

35
Q

What is the function of Hyaluronidase and therapeutic use?

A

Used as a “spreading factor” When applied as an adjuvant, hyaluronidase enhances the diffusion capacity and bioavailability of injected drugs.

Useful in treating heart attack.

36
Q

What is the function of Ribonuclease and therapeutic use?

A

Cleaves RNA which is useful as an Antiviral

37
Q

What is the function of Streptokinase and therapeutic use?

A

cleavage of the Arg/Val bond in plasminogen to form the proteolytic enzyme plasmin.

Useful to treat blood clots.

38
Q

What is the function of Uricase and therapeutic use?

A

Catalyzes the conversion of uric acid to allantoin. Uric acid is an acidic waste product that your body passes through urine.
Useful for Gout.

39
Q

Urokinase

A

plasminogen activator, Plasminogen to Plasmin useful for blood clotting treatment

40
Q

How does flow analysis work?

A

Sample or samples are fed into the main stream and mixing them by passing them through a mixing coil in which gravity does the mixing.