bio chem midterm 2 real Flashcards
(278 cards)
Enzymes
biological catalysts
enzymes differ from ordinary chemical catalysts in several aspects
- higher rxn rates
-milder rxn conditions
-greater rxn specificity
-capacity for regulation
higher rxn rates
10^6-10^12 rate enhancement
-several orders of magnitude faster than chemical catalysts
milder rxn conditions
-temp
-pressure
-pH
greater rxn specifity
-narrow range of substate/product specificity
-stereospecificity, no side products
capacity for regulation
‘fine’ control of rxn rate
Enzyme catalysis
enzymes accelerate but are unchanged by a rxn
any given enzyme is extremely specific
-act on only one/few ligands (substrates)
-carry out limited types of chemical rxns
substrate
the molecule on which an enzyme acts
types of rxns
hydrolytic
condensation
isomerization
oxidation-reduction
group transfer
hydrolytic
-where a substrate is broken down by adding water
-often used by enzymes to break apart complex molecules into smaller usable fragments
-nucleases, proteases, phosphatases
condensation
-usually removes water and combining two molecules together to create a larger molecule
-polymerases, synthases
isomerization
-rearranges bonds often by breaking and forming covalent bonds between atoms resulting in a structurally different molecule
-isomerases
oxidation-reduction
-gain or loss of electrons (transfer of electrons between atoms or molecules)
-oxidases, reductases, dehydrogenases
group transfer
transfer of a specific functional group or atom from one molecule to another
-kinases, transferases
substrate binding
when a substrate interacts with an enzyme
binding sites are-
-an indent or cleft on the surface of the enzyme
-geometric complementarity
-electronic complementarity
geometric complementarity
when the substrate fits into the enzymes active site complementary in that it binds snugly
electronic complementarity
complementary electrostatic surface potentials to the substrate
how do complementary substrates, geometric and electronic, bind to an enzyme’s binding site?
noncovalent forces
what are the two major hypotheses for substrate binding models
-lock-and-key
-induced fit
lock-and-key hypothesis
enzyme active site has specific shape that fit the substrate perfectly
enzyme is the lock and the substrate is the key
induced fit hypothesis
enzyme active site only forms in the presence of substrate and adapts in a change in shape for the substrate to bind to.
-enhances catalytic efficiency
structural data suggests active sites are-
largely preformed with the most demonstrating at least some induced fit