biochem final Flashcards

(52 cards)

1
Q

configuration versus conformation

A

confirmation is the spatial arrangement of substituent groups that are free to assume different positions in space. configuration is

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2
Q

enantiomers exhibit optical activity. What type of mixture shows no optical activity?

A

a racemic mixture, (equimolar solution of two enantiomers) shows no optical rotation

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3
Q

stereospecificity

A

the ability to distinguish between stereoisomers

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4
Q

isolated versus closed system

A

isolated = system exchanges neither matter nor energy with its surroundings

closed system = system exchanges energy but not matter with its surroundings

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5
Q

what does an open system exchange with its surroundings

A

both energy and matter

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6
Q

a living organism is an example of a(n) _____ system

A

open

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7
Q

first law of thermodynamics

A

total amount of energy in the universe is constant

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8
Q

measure of total energy change in a chemical reaction, a measure of number and kinds of bonds broken

A

∆H, enthalpy

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9
Q

gibbs free energy equation

A

∆𝐺=∆𝐻−𝑇∆𝑆

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10
Q

what does the gibbs free energy tell us

A

It relates the change in enthalpy and entropy that take place during a reaction at a specific temperature

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11
Q

spontaneous reactions occur when ∆G is

A

negative

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12
Q

if ∆G is positive, that means that the reaction

A

cannot proceed spontaneously

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13
Q

T/F In some cases, spontaneity depends on temperature

A

true

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14
Q

coupling reactions couple _____ and ______ reactions

A

endergonic and exergonic

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15
Q

the breakage of phosphoanhydride bonds in ATP is

A

highly exergonic

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16
Q

in closed systems, chemical reactions proceed spontaneously until

A

equilibrium is reached

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17
Q

If under a given set of conditions, the reaction A → B occurs with ∆G = –14 kJ/mol and the reaction C → B occurs when ∆G = +16 kJ/mol, then:
A. the conversion of C to A is freely reversible.
B. the conversion of A to C is exergonic.
C. A and C can never be at equilibrium, even under different
reaction conditions.
D. the conversion of A to C is entropically driven.

A

b

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18
Q

mass-action ratio, Q

A

ratio of product concentrations to reactant concentrations at a given time can be calculated to determine how far the reaction is from equilibrium

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19
Q

overall network of enzyme-catalyzed pathways, both catabolic and anabolic, is defined as_____________

A

metabolism

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20
Q

pathways of enzyme-catalyzed reactions that act on the main constituents of cells—proteins, fats, sugars, and nucleic acids—are nearly identical in all living organisms is __________

A

unity of life

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21
Q

____________=keeps the production and utilization of each metabolic intermediate in balance

A

feedback inhibition

22
Q

non-covalent interactions strongest to weakest

A

ionic, dipole, van der waals, hydrophobic

23
Q

why are non-covalent interactions important

A

they are individually weak, allowing for flexibility of structure and interactions, but they are strong collectively allowing for stability

24
Q

most stable structures maximize _______ interactions

25
what 3 things do polarity/solubility affect
1.Solubility and transport 2. Structure of biomolecules 3. Stabilizing interactions
26
hydrophobic effect
Clustering of hydrophobic regions to minimize contact with polar solvent or to Maximize polar region contact with polar solvent
27
ion product of water, Kw
Kw= Keq*[H2O] Kw= [H+][OH-] =1*10^-14 in pure water, the concentration of [H+]=[OH-] [H+]= 10^-7
28
H20 can dissociate to give protons and hydroxyl groups. Where does equilibrium lie?
far left
29
pH equation and OH equation
pH= -log[OH] pH+pOH=14
30
acid dissocation constant, Ka
extent of dissociation
31
henderson-hasselbach equation
pH=pKa+log [A-]/[HA]
32
pKa to Ka formula
pKa= -log Ka
33
buffering region
flat zone of a titration curve where pH=pKa
34
uses of HH equation
can be used to predict state of ionization of a molecule
35
The absorptions of nutrients is determined by:
cells surface area
36
As cell size increases, its surface area to volume ratio decreases.
True
37
equation of surface area to volume ratio for a sphere
3/r
38
Define volume of a sphere
4/3 pi*r^2
39
cells with a larger surface area to volume ratio will have a ________ diffusion rate
better
40
Acquiring shapes that are more elongated while keeping the same volume can help increase what
surface area
41
Calculate the surface-to-volume ratio for a spherical bacterium with a diameter of 0.8mm and compare it with the surface-to-volume ratio for a globular eukaryotic cell with a cell diameter of 150mm
7.5 and 0.04 micrometers, respectively
42
Changes in spatial arrangement of substituents in a molecule, that take place without breaking any covalent bonds, are known as molecular:
conformations
43
At equilibrium, the concentrations of the reactants and products will be equal. True or false?
false
44
A Keq = 1 tell us what about where the equilibrium stands?
The reaction equilibrium lies to the right
45
A system where temperature is exchange but not matter is called a __________ system
closed
46
second law of thermodynamics
entropy is always increasing
47
In which direction does heat energy move spontaneously
hot to cold
48
Exothermic enthalpy changes are shown as
negative
49
what will happen when the mass-action ratio Q=3.5 and the Keq = 1.0
equilibrium will shift left
50
when Q is greater than Keq, which way does the reaction proceed
reverse
51
In glycolysis, glucose is broken down to yield energy. If the equilibrium constant of the isomerization of glucose-6-phosphate to fructose-6-phosphate is 0.5. What is the free energy of the reaction in kJ/mol at 37 degrees C?
1.79
52
-45 81.4 75.5