Biological Molecules- Carbs, Lipids, Proteins, Enzymes Flashcards

(51 cards)

1
Q

What is an enzyme?

A

A biological catalyst

Speeds up the rate of reaction without being used up, by lowering the activation energy

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2
Q

What makes an enzyme specific?

A

It has a specific active site shape.

Only complementary substrates can bind to the active site to form ES complexes.

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3
Q

What is the lock and key model?

A

Active site shape rigid

Only exactly complementary substrates can bind and form ES complexes

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4
Q

What is the induced fit model?

A

Active site changes shape
Substrate binds to active site
AS changes shape
so substrate fits exactly forming an ES complex

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5
Q

How does substrate concentration increase RofR?

A

^substrate concentration
^chance of successful collisions
^chance of forming ES complexes
^RofR

Continues till all ACTIVE SITES FULL= max RofR

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6
Q

How does enzyme concentration affect RofR?

A

^enzyme conc
^chance if successful collisions
^chance of forming ES complexes
^RofR

Continues till all SUBSTRATE used up= max RofR

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7
Q

How does pH affect RofR?

Tertiary

A
If you change pH away from optimum
Causes bonds in tertiary structure to break
Active site shape lost
Can’t form ES complex
Enzyme denatured
Lowers RofR
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8
Q

How does pH affect RofR?

Amino Acids

A

Change in pH
Alters charges on the A.As that make up active site
(Hydrogen+ionic bonds between -NH2 and -COOH groups of the polypeptides)
Substrate can no longer be attached to active site
No ES complexes can be formed

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9
Q

How does temperature affect RofR?

A
As temp ^
Kinetic energy ^ 
Molecules move faster
^ chance of successful collisions
^ chance of forming ES complexes 
^ RofR
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10
Q

What happens when temp exceeds optimum for max RofR?

A

After optimum, bonds in tertiary break
AS shape is lost
Substrate no longer complementary to AS
Can’t form ES complexes as the enzyme is denatured.

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11
Q

What is a competitive inhibitor?

A

Molecules that have a similar shape to the normal substrate and a complementary shape to the AS
Bonds to AS, blocking it
Prevents ES complexes forming

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12
Q

What is a non competitive inhibitor?

A

A substrate that binds to ANOTHER AS on the enzyme- allosteric site
Causes AS to change shape, and so less ES complexes can form

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13
Q

What is a biological molecule?

A

A molecule made and used by living organisms

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14
Q

What are the 3 main functions of carbohydrates?

A

Energy store
Energy source
Provide structure

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15
Q

What are the building blocks of carbohydrates?

A

Monosaccharides

Glucose fructose galactose

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16
Q

Glucose is a heroes sugar. What does this mean?

A

It is a monosaccharide with 6 carbon atoms in each molecule

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17
Q

What are the two types of glucose and what can they be describes as?

A

Alpha and Beta.

Isomers- they have the same formula but different structures.

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18
Q

What is the difference between A & B glucose ?

A

On carbon 1, A glucose has an OH group on the BOTTOM

B glucose has an OH group on the TOP

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19
Q

How are monosaccharides joined together?

A

Condensation reaction
Removes a water molecule between 2 OH groups
Forming a glycosidic bond

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20
Q

How is maltose made?

A

Glucose + glucose

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21
Q

How is lactose made?

A

Glucose + galactose

22
Q

What is a polysaccharide?

A

Many monosaccharides joined together with a condensation reaction. Has glycosidic bonds

23
Q

What is starch a mixture of?

A

2 polysaccharides of alpha glucose:
Amylose - unbranched
Amylopectin - branched

24
Q

How is the structure of starch suited to its function?

A

Insoluble - doesn’t affect WP as water not drawn into cells by osmosis.
Compact - angles of glycosidic bonds give it a coiled structure. This is good for storage in a small space.
Easily broken down - amylopectin branches allow the enzymes to act on the glycosidic bonds easily, breaking them down and therefore releasing the glucose quickly.

25
How can you test for starch?
Add iodine to sample, turns black or blue If positive
26
What is glycogen made up of?
Polysaccharide of A glucose. Similar structure to Amlylopectin, however has more side branches Means stored energy can be released quickly - important in animals as more active.
27
How is glycogen suited to its function?
Breached and so can be released quickly Compact Insoluble
28
What is cellulose made up of?
Monomers of B glucose. | Straight unbranched parallel chains. Allows hydrogen bonds to form cross linkages.
29
Why are the hydrogen bonds in cellulose important?
Individual bonds do v little to strengthen molecule, but all together provide considerable strength. Valuable structural material
30
What is cellulose a major component of? Why is it important?
Plant cell walls, prevents the cell from bursting as water enters via osmosis. Does this by exerting an inward pressure that stops any further influx of water. = cells turgid and push against each other = semi-rigid. Maintains stems and leaves in turgid state so they can provide max SA for photosynthesis
31
How can you test for reducing sugars?
Benedict’s test. Add benedicts reagent to sample and heat in a gently simmering water bath. If the mixture turns brick red and reducing sugar is present
32
How do you test for a non reducing sugar?
If tested for reducing sugar and negative, get a new sample Add dilute hydrochloric acid (hydrolysis glycosidic bonds) Add sodium hydrogen carbonate (neutralises solution) Then heat w/ Benedicts reagent in gently simmering water bath If brick red then non reducing sugar present.
33
What is a globular protein?
Soluble proteins with a specific 3D shape | E.g. enzymes, hormones, antibodies, haemoglobin
34
Fibrolous protein
Strong/ insoluble/ inflexible material | E.g. collagen and keratin
35
Structure of an AA
``` Central carbon Carbonyl group on right (-COOH) Amine group on left (-NH2) Hydrogen above R group below (variable) ```
36
How are AAs joined together?
Carboxyl group of one and amine group of another (C+N) | Forms a dipeptide bond.
37
Protein structure
PRIMARY STRUCTURE - the sequence of AAs, the polypeptide chain SECONDARY STRUCTURE - the primary structure coils to form a helix, held together by hydrogen bonds TERTIARY STRUCTURE - secondary structure folds again to form final 3D shape. Held together by ionic/ hydrogen/ disulphides bonds. QUATERNARY STRUCTURE - more than one polypeptide chain folded together.
38
What is collagen used for?
Strong - used to build tendons, ligaments, connective tissues.
39
What is the structure of collagen?
Primary - mainly glycine (simplest AA) Secondary - tight coil, not much branching. Tertiary coils again Quaternary made from 3 tertiary wrapped around each other like rope
40
How do you test for a protein?
Add biuret, turns purple if protein present.
41
Give 3 lipids and their function
Triglycerides (fat for energy store, insulation, protection of organs) Phospholipids (to make membranes) Cholesterol (for membrane stability & make hormones)
42
What is the structure of a triglyceride?
One glycerol and three fatty acids | Joined by a condensation reaction, forming ester bonds (COOC)
43
What are the two types of triglyceride?
Saturated - has no C=C bonds in the R group of the fatty acid Unsaturated - has C=C bonds in the R group of fatty acid
44
What is a phospholipid made up of?
1 glycerol 2 fatty acids 1 phosphate group Phosphate forms hydrophilic head, fatty acid hydrophilic tail. Phospholipid bilayer = basic structure of membranes
45
What are nucleic acids?
Polymers made from nucleotides (DNA & RNA)
46
What is DNA?
Deoxyribonucleic acid | Carries genes = sections of DNA that codes for a protein
47
What is a DNA nucleotide made up of?
A phosphate group a ribose sugar a nitrogenous base
48
What is DNA structure?
DNA double helix Join nucleotides by condensation reaction between sugar and phosphate to form polynucleotide Join 2 polynucleotide chains by hydrogen bonds between bases Produces a double strand then coils into a double helix
49
What are the properties of DNA structure? (5)
Double-stranded makes DNA more stable Helix = more compact Sugar phosphate backbone = protect bases Hydrogen bonds weak = strong in numbers however CBP insures identical copies of DNA made by SCR
50
Describe semiconservative replication SCR
DNA helicase breaks hydrogen bonds between the complimentary bases Double strand separates leaves two separate strands Free complimentary nucleotides bind to exposed bases on template strand in a 3’ to 5’ basis = CBP DNA polymerase joins together the sugar phosphate backbone of the new strand via a condensation reaction.
51
What are antiparallel strands?
One end ofDNA strand is the 3’ and the other is the 5’ DNA helix = strands run in opposite directions - antiparallel Active site of DNA polymerase only complimentary to the 3’ New strands are made in the 5’ to 3’ direction - antiparallel so polymerase works in opposite directions on each strand