Bisc 102 Midterm Flashcards
Adaptation
Any TRAIT that helps an organism survive and reproduce. Can be structural, behavioural, or physiological
Structural adaptation
ex. crab spiders that mimic the petals of a flower; clam that has a mantle that looks like a fish for dispersion of parasitic larvae; the neck of a giraffe to reduce competition for food or attracting mates; angular fish- light attracts food; peacocks attract mates
Behavioural adaptation
ex. archer fish shoots insects on branches with a jet of water, correcting for angle; bowerbird decorates nest to attract a mate with objects the colour of its eyes; migration tracks good foraging areas throughout the year
Physiological adaptation
desert animals; camels have efficient storage mechanisms; bombardier beetle shoots a hot chemical reaction for defense; human sperm- through number and protective coat
Jean Baptiste Lamarck
(1744-1829) First suggested that species are not fixed, but change over time. His ideas were –Use and disuse; Inheritance of acquired characteristics (ie. cutting a tail off a mouse)
These processes have been refuted
Charles Darwin
(1809-1882) Traveled around the world as a naturalist on “The Beatle” Studied finches, tortoises at the Galapacos Islands. Wrote The Origin of Species (1959)
Alfred Russel Wallace
(1823-1913) Realized the same thing as Darwin around the same time, the two corresponded
Natural selection
A PROCESS by which the individuals in a population that have the characteristics best suited to the environment survive and reproduce better than other individuals
The five steps of evolution by natural selection
Observations: competition, variation among individuals, heritable variations
Inference: Selection, Adaptation
Evolution: Step 1- Competition
In theory, populations are exponential while in reality they are fairly stable because resources are limited
Evolution: Step 2- Variation among individuals
Some individuals are better at competing for resources than others
Evolution: Step 3- Heritable variation
At least some of the differences in ability to compete for limited resources are heritable
(= genetically based)
Evolution: Step 4- Natural selection
Those individuals with traits that allow better survival and/or reproduction have higher fitness (ex. large rabbits eat the most, reproduce the most whereas small rabbits die off from lack of food
Evolutionary fitness
The number of progeny (offspring) produced
Evolution: Step 5- Adaptation (evolution)
The CHANGE in a population over time (ie. Large body is an adaptation for competing for limited carrots)
Three conditions necessary and sufficient for evolution by natural selection
- There must be variation in the trait 2. Variation is heritable 3. Variation has fitness consequences
Adaptation does not mean perfection because…
- Organisms are adapted to the current environment
2. Natural selection is often constrained
Constraints to natural selection
Adaptations are often compromises (consdering all pressures on an organism); Natural selection is constrained by history (there are no 6 limbed vertebrates); Natural selection acts on existing variation (acts more on a population with a large variety)
Protocells
Abiotically produced collection of molecules, fluid-filled vesicles bounded by a membrane-like structure
Define life
1) Metabolism (nutrient uptake, processing, waste elimination) 2) Generative process (growth and reproduction/replication 3) Responsive processes (immediate responses to environment, individual adaptation, population adaptation) 4) Control processes (coordination, regulation) 5) Structural organisation (cellular level, organismal level)
Proposition by Aristotle
(4th century BP) First idea of the origin of life:
Spontaneous generation- ‘Living organisms arise spontaneously from non-living matter’
Evidence: Maggots from dead meat, Mice from wheat seeds, Lice from sweat, Frogs from damp mud
Proposition by Louis Pasteur
Biogenesis: ‘Life can only originate from pre-existing life’. His experiment used sterilized soup broth in a bottle that bacteria couldn’t enter, and he did not find growth
The recipe for life
Energy source, raw materials, suitable environment
Conditions on the early Earth
Extremely high temperatures; Different, Reducing atmosphere (Water vapour, Nitrogen, Carbon dioxide, Methane, Ammonia, Hydrogen, Hydrogen sulfide); No liquid water; Little oxygen; As Earth cooled, water vapour condensed and hydrogen escaped
Energy sources
Sun (light, UV); Volcanic eruptions; Lightning
Raw materials
Elements present on Earth (CHNOPS); Extraterrestrial sources
Extraterrestrial sources
Initially proposed by Arrhenius in early 1900s; Support from a meteorite containing amino acids and one with things that may be fossilized martian bacteria?
Origin of life on Earth by chemical evolution
With the right chemical and physical conditions, life could have began in four stages. 1) Abiotic synthesis of monomers 2) Formation of polymers 3) Packaging of polymers into protocells 4) Self-replication
Origin of life Stage 1: Spontaneous formation of monomers
Oparin’s hypothesis- a reducing atmosphere, a suitable environment, and energy will cause simple molecules to combine into organic compounds. Problem: The Earth’s atmosphere may not have been reducing, though there are alternative “suitable environments” (deep sea vents, volcanoes)
Testing Oparin’s hypothesis
Miller -Urey experiments- combining water vapour, methane, ammonia, hydrogen with electricity synthesized sugars, pyrimidine and purine bases, amino acids, ATP.
Origin of life Stage 2: Polymer formation
Monomers could have combined to form organic polymers; using the same energy source as stage 1; Clay as substratum for polymerization? Experimental evidence: Dripping solution of amino acids on hot clay results in spontaneous formation of polymers
Origin of life Stage 3: Protocells
Polymers aggregated into complex, organized, cell-like structures called protocells; Form spontaneously in the lab such as coacervate droplets, liposomes, and proteinoid microspheres
protocells
Polymers aggregated into complex, organized, cell-like structures; add some living qualities: Structural organisation, Simple homeostasis and metabolism, Simple reproduction
Origin of life Step 4: Self-replication (Which came first, genetic material or the enzymes required to catalyze it?)
RNA, Single-stranded genetic material that can form enzymes (ribozymes)
Could have facilitated both replication and reaction catalysis on early Earth
Natural selection in an RNA world
Variation among RNA strands due to copying errors+Replication+Some strands better at competing for nucleotides and replicating
->Natural selection for shape, stability, replication accuracy & speed most suited to environment
RNA world -> DNA world
RNA served as template for assembly of DNA nucleotides, which occured because DNA is a more stable genetic molecule
Which protocells would have been the most successful?
Protocells able to take up RNA with superior replication and catalytic abilities would have been more successful than those with inferior or no RNA
Prokaryotes
The most ancient organisms; Unicellular; Lived alone on Earth for nearly 2 billion years; Greatest diversity of lifestyles and habitats; They have created the Earth we know
Prokaryote domains
Bacteria and Archaea (Only 4,500 species described so far)
Pro vs Eu
Prokaryotic cells are Smaller; Single membrane system; Nucleoid (no nucleus); No walled organelles; No cytoskeleton
Bacteria
Includes most known prokaryotes; Hugely diverse in metabolism and structure
Examples of Bacteria
Photosynthetic cyanobacteria; Organisms important in decomposition and nutrient cycles; Some disease organisms (salmonella, chlamydia); 500-1,000 spp of bacteria in your gut!
Archaea
Key differences from bacteria: Cell wall composition and Details of protein synthesis; They live in harsh and extreme environments, Extremophiles
(‘extreme-lovers’) include Methanogens (methane-makers), Halophiles (salt lovers) and Thermophiles (heat-lovers)
Why is studying modern prokaryotes important?
Some modern prokaryotes live in environments similar to those in the early Earth; The metabolism of these groups may be similar to the metabolism of ancient groups
Nutritional diversity in modern prokaryotes
Photo-autotroph (Light + CO2)
Chemo-heterotroph (Organic compounds)
The two below are only in prokaryotes:
Chemo-autotroph (Inorganic chemicals + CO2)
Photo-heterotroph (Light + Organic compounds)
Respiratory diversity in modern prokaryotes
Obligate anaeroby (Fermentation/anaerobic respiration) Facultative anaeroby (O2 if present, or fermentation) Obligate aeroby (Always O2)
The first organisms- chemoheterotrophs?
Could have ‘eaten’ ATP,With depletion of ATP in environment, selection for ability to make ATP; The Evolution of glycolysis occured early, which is further evidence
The first organisms- hemoautotrophs?
May have oxidised H2S and reduced forms of iron found at Deep-sea vents that were more abundant on early Earth
The evolution of photosynthesis
Chemotrophy -> Phototrophy
Likely scenario:
Non-oxygen-producing
photosynthesis->Oxygen-producing photosynthesis
Non-oxygenic photosynthesis
Occurs in green and purple sulfur bacteria from anoxic swamps;
H2S and light, gives S2??, ATP, NADH
Oxygenic photosynthesis
Occurs in cyanobacteria;
H2O and light, gives )2, ATP, NADPH
Proof oxygenic photosynthesis arose early
2.7 by-old banded iron formations indicate increased atmospheric O2; 3.5 by-old stromatolites = photosynthetic cyanobacteria
Stromatolites
Cyanobacteria trap sediment, form calcium carbonate mounds; Added oxygen to Precambrian atmosphere (ex Shark Bay)
The danger of oxygen
Oxygen can produce highly reactive, short-lived ‘free radicals’; Free radicals inhibit enzymes and damage cells; Probably drove many prokaryotes extinct
Adaptations from the appearance of oxygen– free radicals
Natural selection favoured forms capable of detoxifying oxygen free radicals– Evolution of protective enzymes and molecules (Vitamins A, C, E, Peroxidases, Carotenoids in plant chloroplasts)
Adaptations from the appearance of oxygen– oxidizing power
Natural selection favoured forms capable of harnessing the oxidizing power of oxygen– Evolution of aerobic respiration (Evidence: Living purple non-sulfur bacteria use the same ETC for photosynthesis and aerobic respiration)
The Evolution of metabolism by natural selection
- Variation in metabolic pathways
- Variation heritable (As the environment changes, selection pressures change, modifying existing metabolic pathways in a step-by-step fashion)
- Some pathway modifications increased the fitness of the organism displaying them
Fossil record
Includes:
partial or complete remains (e.g., bones, shells); traces (e.g., footprints, ‘shadows’)
Why is fossil preservation biased?
hard vs soft parts; abundant vs rare species; long-lived vs short-lived species; size of geographical range
When did Multicellularity arise?
~ 2 bya – Unicellular eukaryotic organisms;
1.2 bya – Oldest known fossils of multicellular organisms (small algae that already showed some adaptations including different sexes)
How did multicellularity begin? Symbiosis
Two different species- how to incorporate the genomes of two species into one
How did multicellularity begin? Cellularisation
ie. incorporating mitochondria/chloroplasts in a cell
no known example
How did multicellularity begin? Coloniality
All of the same species. Ex. Many colonial protists, some with cell specialisation such as slime molds
What is an animal?
- Multicellular
- Heterotrophic
- Eukaryotic
- Structural proteins (e.g. collagen), nerve and muscle cells
- Unique sequence of development, regulated by Hox genes
Ediacaran fauna
~544 mya!
Earliest known complex multicellular organisms; Can be fond-like, disk-like, or segmented; Lived 610-542 mya; ‘Discovered’ in 1947 in Ediacara Hills; Occur around the world
Ediacaran fauna legacy
What happened to them? DId they die out by predation, competition, change in environment? Did they die without descendants or are they ancestral to modern animal phyla? Were they really animals?
The Cambrian explosion 535-525 mya
Modern animal phyla appear in the fossil record suddenly, dramatically, simultaneously; All major body plans; Hard body parts; All 35 living phyla
(+ a few more)
Burgess Shale – 520-515 mya
Animals include: Gorgonians, sponges
Marella, Ottia, trilobite, Anomalocaris (1m long!), Pikaia (ancestor of vertebrates?)
Wiwaxia (snitch like creature)
Why did animal life appear so suddenly?
Threshold oxygen levels crossed; Nutrient levels may have risen, increasing primary productivity and therefore consumer productivity (O2 would have allowed higher metabolism, so larger bodies.)
Why did animals diversify so quickly? Ecological causes
New niches arose with evolution of animals; Predation led to selection for increased size
Why did animals diversify so quickly? Geological causes
Active metabolism possible with oxygen availability opened new ways of life; Supportive collagen can only be formed in presence of oxygen
Why did animals diversify so quickly? Genetic causes
Evolution of Hox complex led to variation in morphology; Early animal genomes were simple and thus easily modified
Why did animals diversify so quickly? Climatic causes
Series of freeze-thaw cycles preceded the Cambrian explosion = Snowball Earth hypothesis
Alternative: Cambrian animals did NOT diversify quickly
“The Cambrian explosion had a long fuse…”
Chengjian site – 10 my older than Burgess Shale, includes all major animal groups
Molecular clocks suggest most animal phyla diverged >600 mya
Perhaps animals diversified gradually before the Cambrian but were suddenly preserved in the fossil record during the Cambrian
What is a land plant?
Multicellular, eukaryotic, autotrophic (P/RBC Algae)
Cellulose in cell walls (P/BC Algae)
Chloroplasts with chlorophyll a b (P/G Algae)
Green algae
Chlorophytes- Mostly freshwater, some marine
Charophytes- All freshwater, Indicators of good water quality
Shared features of Charophytes & land plants
Cell wall composition; Cytokinesis; biochemistry; sperm ultrastructure
Suggests close relationship between the two groups
Land plant origins
DNA comparisons identify charophytes as closest relatives of land plants; The two groups diverged ~475 mya
Characteristics of land plants reflect:
Evolutionary origin of plants from ancestral algae (= ancestral traits); Adaptation of plants to a terrestrial environment (= derived traits)
What are the problems faced by land plants?
Desiccation; support; reproduction and development; coping with environmental fluctutations