Blueprint Of Life Flashcards

0
Q

Most genes encode proteins and are transcribed into______.

A

Messenger RNA

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1
Q

Three different kinds of RNA

A

mRNA
tRNA
rRNA

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2
Q

The information encrypted in _______ is deciphered according to genetic code, which correlates each set of three nucleotides to a particular amino acids.

A

mRNA

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3
Q

DNA polymerase synthesize DNA in the ________ direction

A

5’ to 3’

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4
Q

Add nucleotides to which end?

A

3’

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5
Q

The DNA strand that functions as the template is called the______

A

Minus strand

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6
Q

A RNA transcript that carries the code for only one gene

A

Monocystronic

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7
Q

Alkylating agents

A

Adds alkyl groups to nucleobases

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8
Q

Nitrous acid

A

Converts amino to keto

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9
Q

What is an example of an Alkylating agent?

A

Nitrosoguanidine adds methyl group to guanine

Base pairs to thymine instead of cytosine

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10
Q

Base analogs

A

Chemicals that are structurally similar to nitrogenous bases but have a slightly altered base pairing properties
2-amino purine resembles A but often pairs with C instead of T
5-bromouracil resembles T, but often pairs with C

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11
Q

AZT azidothymidine does what terrible thing?

A

Halt elongation of DNA because the 3’ end is not the needed OH

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12
Q

Intercalating agents

A

Ethidium bromide

Randomly inserts between adjacent bases

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13
Q

What kind if mutation is caused by Intercalating agents?

A

Frame shift

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14
Q

Transposition

Transposonjpim genes

A

Jumping from replicon to replicon

Insert themselves randomly between genes

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15
Q

Radiation
UV light
X rays

A

Thymine dimers- covalent bonding between adjacent thymine bases
- Uv light causes this

X-rays- cause breaks and alterations in DNA
- often lethal

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16
Q

Repair of damaged DNA

A

Proofreading

Mismatch repair

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17
Q

Proofreading

A

DNA polymerase has a proof reading function, can excise wrong base and pit back in the good base

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18
Q

Mismatch repair

A

Endonuclease enzyme removes short stretch of nucleotide

DNA polymerase fills gap

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19
Q

Repair of thymine dimers

A

Photoreactivation- uses visible light to break covalent bonds between dimers
Excision repair-dark repair, snips out the damaged region, need DNA polymerase, etc

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20
Q

Repair of modified bases

A

SOS repair last ditch effort to bypass damage

Produces new DNA polymerase , highly error prone

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21
Q

Mutation selection

A

Direct selection

Indirect selection

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22
Q

Direct selection

A

Inoculating pop of bacteria in medium on which only mutants will grow
Used to select Antimicrobial resistant organisms

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23
Q

Indirect selection

A

Required to isolate organisms that require a growth factor

Autotrophic mutants

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24
Auxotroph
A microorganism that requires a growth factor
25
Conjugation
Mechanism of horizontal gene transfer in which the donor cell physically contacts to recipient cell
26
DNA mediated transformation
Mechanism of horizontal gene transfer in which the bacterial DNA is transferred as naked DNA
27
Genotype
The sequence of nucleotides in an organisms DNA
28
Homologous recombination
Process by which a cell replaces a stretch if Dna with a segment that has a similar nucleotide sequence
29
Horizontal gene transfer
DNA transfer from one bacterium to another by conjugation, transformation, or transduction
30
Mutation
A change in the nucleotide sequence if a cell's DNA that is then passed on to the daughter cells
31
Non homologous recombination
DNA recombination that does not require extensive nucleotide sequence similarity in the stretches that recombine
32
Phenotype
The observed characteristics of a cell
33
Plasmid
An extra chromosomal DNA molecule that replicates independently of the chromosome
34
Prototroph
A microorganism that does not require any organic growth factors
35
Transduction
Mechanism of horizontal gene transfer in which bacterial DNA is transferred inside a phage coat
36
Transposon
Segment if DNA that can move from one site to another in a cells genome
37
Wild type
Form of the cell or gene as it typically occurs in nature
38
Revertant
A auxotroph that reverts back to wild type, to prototroph
39
Repair of damaged DNA
``` Proof reading by DNA polymerase Mismatch repair Light repair Excision repair SOS repair Action of glycosylase ```
40
Mismatch repair
Methylation of DNA nucleobased label template strand Protein cuts the site of error, degrades a bit, eliminating the error nucleotide DNA polymerase synthesizes a new stretch Error in NUCLEOTIDE INCORPORATION
41
Ways to fix errors in nucleotide incorporation
Mismatch repair | Proof reading
42
Repair of modified nucleobases ((oxidized guanine))
Glycosylase, enYme that removes oxidized nucleobases from the sugar phosphate backbone
43
Repair of thymine dimers
Enzyme uses visible light to restore originality ---- photoreactivation, light repair Excision repair-- cuts on either side of the dimer, DNA polymerase, etc.
44
SOS repair
Last ditch DNA so heavily damaged by uv light that excision repair nor photoreactivation can do the job SOS DNA polymerases have no proof reading ability. SOS mutagenisis
45
Breifly describe direct selection of mutant bacteria
The bacteria is grown on a nutrient agar that can support the mutant, but not the parent. For example, The nutrient agar may include an antibiotic that the parent is susceptible to, but a mutant antibiotic resistant wouldn't.
46
Indirect selection
More difficult, involved method. Used for isolating mutants away from parents that can grow in the same growth medium Growth on steak plate Use velvet stamp, in same orientation, to collect cells from colonies and transfer to a plate that cannot metabolically support the mutant Plates compared to note which colonies are missing Missing means auxotroph
47
Penicillin enrichment of mutants
Cells grow in nutrient broth---> add penicillin and incubate--> penicillinase added, plate in to nutrient Agar Compare to control on agar
48
Ethidium bromide
Intercalating agent
49
5-bromouracil
Nucleoside analog
50
Thymine dimers
Uv light
51
Transposons
Insertion mutagen
52
Newly incorporated DNA nucleotides are added to the ______ end of the growing DNA strand.
3' OH
53
mRNA is synthesized from a DNA template
Transcription
54
Three nucleotides that are complementary to particular RNA nucleotides
Anticodon
55
What is the inducer of the lac operon?
Lactose
56
What is the beta galactosidase
Structural gene
57
Place where repressive binds
Operator
58
Binds to operator
Repressor
59
Recognized by sigma factor
Promoter