Carbs + lipids + fermentation and metabolism Flashcards

(71 cards)

1
Q

What are macromolecules?

A
  • Macromolecules are polymers
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2
Q

What are polymers? + examples

A
  • A polymer is a long molecule consisting of
    monomers
  • Three of the four classes of life’s organic
    molecules are polymers
    o Carbohydrates
    o Proteins
    o Nucleic acids
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3
Q

How are polymers formed and broken?

The Synthesis and Breakdown of Polymers

A
  • A dehydration reaction occurs when two
    monomers bond together through the loss of
    a water molecule
  • Polymers are disassembled to monomers by
    hydrolysis, a reaction that is essentially the
    reverse of the dehydration reaction
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4
Q

What are carbohydrates?

A

Carbohydrates (saccharides or sugar): compounds
with the formula (CH2O)n or derivatives of such
compounds.

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5
Q

Different types of carbohydrates?

A

▪ Monosaccharide, the simplest carbohydrates,
small, monomeric molecules
▪ Oligosaccharide, only a few monomer units are
involved
▪ Polysaccharide, long polymers of
monosaccharides

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6
Q

Representative carbohydrates
examples

A

a) Maltose
b) Glucose
3) Amylose

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7
Q

What are monosaccharides?

A

Monosaccharide (monomeric sugar, a simple sugar) is not linked
to any other sugars.

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8
Q

The formula of monosaccharides and how can they be categorised?

A

▪ the formula (CH2O)n
▪ can be categorized according to
o The location of the carbonyl group (as aldose or ketose)
o The number of carbons in the carbon skeleton
n Category
3 Triose
4 Tetrose
5 Pentose
6 Hexose
7 Heptose
8 Octose

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9
Q

What are trioses?

A

Trioses: 3-carbon sugars (C3H6O3)

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10
Q

What are pentoses?

A

Pentoses: 5-carbon sugars (C5H10O5)

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11
Q

What are Enantiomers of glyceraldehyde and what is a chiral carbon?

A
  • The mirror image isomers are called enantiomers.
  • Chiral (asymmetric) carbon: has four different groups attached to it.
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12
Q

CHECK BACK SLIDES AND LOOK AT DIAGRAMS AND HOW TO IDENTIFY INCLUDING STRUCTURES

A
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13
Q

What are Phosphate esters of monosaccharides

A

Sugar phosphates are major
participants in many metabolic
pathway

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14
Q

Abbreviations for some monosaccharides and their
derivatives

A
  • Glucose Glc
  • Glucosamine GlcN
  • N-acetylglucosamine GlcNAc
  • Galactose Gal
  • Galactosamine GalN
  • N-acetylgalactosamine GalNAc
  • Gluconic acid GlcA
  • N-acetylneuraminic acid (sialic acid) NeuNAc
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15
Q

Examples of biochemical roles of monosaccharides

A

Trioses
Glyceraldehyde
Dihydroxyacetone
The 3-phosphate is an intermediate in glycolysis
The 1-phosphate is an intermediate in glycolysis

Pentoses
D-Ribose
2-D-Deoxyribose
Constituent of ribonucleic acid (RNA)
Constituent of deoxyribonucleic acid (DNA)

Hexoses
D-Glucose

D-Galactose
D-Fructose
A major energy source for animal metabolism; structural role in
cellulose
As part of lactose (milk); structural polysaccharides
A major plant sugar; part of sucrose; intermediate in glycolysis

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16
Q

LOOK BACK AT DIAGRAM OF DEHYDRATION RAEACTION AND HOW MALTOSE IS FORMED FROM 2 MONOSACCHARIDES

A
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17
Q

Structure and function of polysaccharides and examples?

A
  • The polymers of sugars, have storage and structural
    roles
  • The structure and function of a polysaccharide are
    determined by its sugar monomers and the
    positions of glycosidic linkages
  • Starch, a storage polysaccharide of plants, consists
    entirely of glucose monomers
  • Glycogen, a storage polysaccharide in anima
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18
Q

Difference between amylose and cellulose?

A

Amylose (Starch): 1–4 linkage of a glucose monomers
Cellulose: 1–4 linkage of b glucose monomers

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19
Q

What is Starch: amylose and amylopectin

A

Storage structures

Amylose = unbranched
Amylopectin = somewhat branched

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20
Q

Glycogen structure?

A

Extensively branched

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21
Q

What is Amylase Specificity

A
  • Amylase is an enzyme that breakdown
    starch (amylose and amylopectin) into
    disaccharides and trisaccharides.
  • Amylases act on α-1,4-glycosidic bonds.
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22
Q

Why dont humans have cellulose?

A

Humans do NOT have
enzymes that can hydrolyse
the β-glycosidic linkages of
cellulose therefore its located in plants

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23
Q

What is Chitin

A
  • Chitin forms the exoskeleton
    of arthropods.
  • Chitin is used to make a strong and flexible
    surgical thread that decomposes after the
    wound or incision heals.
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24
Q

What is Hyaluronic acid

A

It is a structural component in cartilage and is present synovial fluid of joints and in the vitreous humour of the eye.

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25
The functions of carbohydrates
▪ Energy storage and generation (starch, glycogen) ▪ Biological structural materials (cellulose, chitin, etc) ▪ Polysaccharide on cell surface or attached to proteins aid in molecular recognition
26
Benedict test and Fehling tests for reducing sugar
Positive = red colour Control = blue Siemens urine test slip used to test for issues detected from urine
27
What is Polysaccharide-peptide complex: peptidoglycan (Gram staining test)
Gram-positive organisms have a thicker peptidoglycan cell wall compared with gramnegative bacteria. It is a 20 to 80 nm thick polymer while the peptidoglycan layer of the gram-negative cell wall is 2 to 3 nm thick and covered with an outer lipid bilayer membrane.
28
Monosaccharide + Disaccharides example + function summary?
Monosaccharides: Glucose fructose Disaccharides: Lactose Sucrose Function: Fuel : carbon sources that can be converted to other molecules or combined into polymers
29
Polysaccharides example + function summary?
Polysaccharides: Cellulose (plants) Starch (plants) Glycogen (animals) Chitin (animals + fungi) Function: Strengthen plant cell walls, Stores glucose for energy, Strengthens exoskeleton and fungal cell walls
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CARBS + LIPIDS LOOK BACK RECORDING MAKE EXTRA IF NECESSARY
31
Definition of lipid
* No simple definition, do not have common structural features * Not polymers as not built from a simple monomer * Are large molecules * The unifying feature of lipids is having little or no affinity for water, hydrophobic * Are varied in forms and functions
32
Types of lipids
* Neutral lipids: fats and oils (simple lipids) * Phospholipids, glycolipids (complex lipids) * Steroids (isoprene lipids) * Waxes
33
What are Neutral lipids: fats and oils
* Often called a triacylglycerol * Made from two components, glycerol ( a simple alcohol) and fatty acids * The fatty acid joins to the alcohol by an ester link * Are the main storage form of fat in cells (adipose cells)
34
Glycerol and Fatty acid structure check slides
35
Blood test triglyceride levels?
Blood test: triglyceride - normal level: <150 mg/dL - border line: 150-199 mg/dL - high: >200mg/dL
36
Properties of fatty acids
* May be saturated (no double bonds) or unsaturated (1-4 double bonds) * Double bonds are in cis conformation increasing area of lipid * Have an even number of carbon atoms (commonly 12-24) * Have a single carboxyl (acid) group (-COOH) * Become more hydrophobic with increasing carbon number
37
Difference between saturated and unsaturated fatty acids?
Saturated fats have no double bonds between carbon atoms in their structure where as unsaturated do * Unsaturated fatty acids have lower melting points than saturated fatty acids. * Unsaturated fatty acids maintain fluidity of cell membranes.
38
What are Essential fatty acids and where do we get them from?
* Certain unsaturated fatty acids are not synthesized in the human and animal body * must be supplied in the diet * required for normal growth, and thought to provide protection against cardiovascular disease e.g. ω-6 fatty acids (linoleic acid), ω-3 fatty acids (linolenic acid)
39
What is Arachidonic acid
* Present in the cell membrane * A key inflammatory intermediate
40
Saturated and unsaturated fats
* Fats made from saturated fatty acids are called saturated fats, and are solid at room temperature * Most animal fats are saturated * Fats made from unsaturated fatty acids are called unsaturated fats or oils, and are liquid at room temperature * Plant fats and fish fats are usually unsaturated
41
What are Phospholipids
* In a phospholipid, two fatty acids and a phosphate group are attached to glycerol * The two fatty acid tails are hydrophobic, but the phosphate group and its attachments form a hydrophilic head * Phospholipids make up cell membranes
42
What is Niemann-Pick disease
* A genetically-inherited disese. * Type A and B: Sphingomyelinase deficiency * Type C: Defective cholesterol transport NPC-1 gene * Characterized by ✓ progressive neurologic damage ✓ enlarged live and spleen ✓ jaundice
43
Example of a Glycolipids
* Cerebroside: contain sugar residues
44
What are steroids (lipids)
* Steroids are lipids characterized by a carbon skeleton consisting of four fused rings * Cholesterol, an important steroid, is a component in animal cell membranes * Although cholesterol is essential in animals, high levels in the blood may contribute to cardiovascular disease
45
Cholesterol levels
Blood test- total cholesterol 5 mmol/L or less for healthy adults
46
Biological functions of lipids
* Structural components of cell membranes * Energy storage * Adipose tissue also cushions vital organs and insulates the body * Regulate cellular activities as hormones
47
Glycerol examples + functions
Example: Triacylglycerols (fats or oils): Glycerol + 3 fatty acids Functions: Important energy source
48
Phospholipids structure+ functions
Phospholipids: Glycerol + phosphate group + 2 fatty acids Function: Lipid bilayer of membranes (Hydrophilic heads, Hydrophobic tail)
49
Steroid backbone structure + functions
Steroids: 4 fused rings with attached chemical groups Function: Component of cell membranes (cholesterol), Signalling molecules that travel through the body (hormones)
50
What are catabolic pathways?
* Catabolic pathways (mostly exergonic) release energy by breaking down complex molecules into simpler compounds - Cellular respiration, the breakdown of glucose in the presence of oxygen, is an example of a pathway of catabolism
51
What are anabolic pathways?
* Anabolic pathways (endergonic) consume energy to build complex molecules from simpler ones - For example, the synthesis of protein from amino acids is an anabolic pathway
52
How do Energy-rich molecules power cellular work?
▪ By coupling exergonic to endergonic reactions ▪ Types of work in a cells: * Chemical: e.g. synthesis of polymers from monomers * Active transport * Mechanical Most energy coupling in cells is mediated by ATP
53
What is the energy currency?
* The “energy currency” used by cells to carry out work is adenosine-3-phosphate (ATP) and ATP-like molecules * ATP is composed of ribose (a sugar), adenine (a nitrogenous base), and three phosphate groups
54
How does ATP work?
▪ The bonds between the phosphate groups of ATP’s tail can be broken by hydrolysis ▪ Energy is released when the terminal ATP phosphate bond is hydrolysed ▪ In the cell ATP drives endergonic reactions by phosphorylation, transferring a phosphate group to another molecule to form a phosphorylated intermediate with a higher potential energy.
55
What does ATP hydrolysis lead to?
ATP hydrolysis leads to a change in protein shape and binding ability
56
How does ATP regenerate?
* ATP is a renewable resource that is regenerated by addition of a phosphate group to adenosine diphosphate (ADP) * The energy to phosphorylate ADP comes from catabolic reactions in the cell (cellular respiration)
57
Stages of cellular respiration?
Stage 1: Conversion of glucose, fatty acids and some amino acids to acetyl groups (in acetyl-coenzyme A) ➢ Glycolysis (Greek: glykys (sweet/sugar) & lysis (splitting)) conversion of 1 glucose to 2 pyruvate and ATP Stage 2: Citric acid cycle (Krebs cycle): oxidation of the acetyl groups to CO2 and electrons (in NADH and FADH2) Stage 3: Electron transfer and oxidative phosphorylation
58
Where does glycolysis occur?
Glycolysis occurs in the cytosol and involves substrate level phosphorylation
59
What do Electron transporters do?
* Electrons from organic compounds are usually first transferred to NAD+ , a coenzyme. Another electron transporters is FAD (Flavin adenine dinucleotide) * As an electron acceptor, NAD+ acts as an oxidizing agent during cellular respiration. * Each NADH (the reduced form of NAD+ ) represents stored energy that is tapped to synthesize ATP via the electron transport chain.
60
Summary: Glycolysis
* Glycolysis (“sugar splitting”) breaks down glucose into two molecules of pyruvate * Glycolysis occurs in the cytoplasm and has two major phases * Energy investment phase * Energy payoff phase * Glycolysis occurs whether or not oxygen is present * Glycolysis involves substrate level phosphorylation.
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What happens in Stage 2: Pyruvate oxidation and Citric acid cycle
Pyruvate oxidation to Acetyl CoA and CO2 is catalysed by pyruvate dehydrogenase complex (E1, E2, E3): irreversible reaction ▪ Krebs cycle: Breakdown of pyruvate to CO2 in 8 steps, each catalyzed by a specific enzyme 1953: Nobel Prize in Physiology/Medicine ▪ The NADH and FADH2 produced by the cycle relay electrons and protons to the electron transport chain
62
Location of cellular respiration?
Mitochondria
63
What happens in Stage 3: Oxidative phosphorylation
Metabolic pathway in which respiratory enzymes in the mitochondria (electron transport chain) synthesize ATP from ADP and inorganic phosphate during the oxidation of NADH and FADH2 by molecular oxygen Oxidation: the loss of electron(s) or proton(s) Reduction: the gain of electron(s) or proton(s) ▪ Electrons from electron donors (NADH or FADH2 ) create H+ gradient by passing through electron-transport complexes ▪ Oxygen is the final electron acceptor in aerobic organisms ▪ FADH2 provides 1/3 less energy for ATP synthesis than NADH ▪ The electron transport chain does not synthesise ATP directly – it creates a proton gradient
64
How does Stage 3: Oxidative phosphorylation Chemiosmosis - The Energy-Coupling Mechanism work?
Chemiosmosis: the use of energy in a H+ gradient to synthesise ATP * Electron transfer in the electron transport chain causes proteins to pump H+ from the mitochondrial matrix to the intermembrane space * H+ move back across the membrane through the ATP synthase * ATP synthase uses the exergonic flow of H+ to drive phosphorylation of ATP
65
Accounting of ATP production
About 34% of the energy in a glucose molecule is converted into ATP during cellular respiration, making about 32 ATP molecules
66
What is oxidative phosphorylation?
* The process that generates almost 90% of the ATP is called oxidative phosphorylation because it is powered by redox reactions. * A smaller amount of ATP is formed in glycolysis and the citric acid cycle by substrate-level phosphorylation. * For each molecule of glucose degraded to CO2 and water by respiration, the cell makes up to 32 molecules of ATP
67
Regulation of Metabolic Pathways
Enzymes can catalyse both anabolic and catabolic reactionsi.e., if an anabolic reaction is suppressed, this will suppress the catabolic too Points of regulation: Some reactions in a pathway (often highly exergonic) are catalysed by different enzyme(s) Mechanisms of regulation: * Expression of enzymes (transcription/translation) * Inhibition/activation of enzymes
68
What if there is no O2? for cellular respiration??
* Anaerobic respiration uses an electron transport chains with a final electron acceptor other than O2 (e.g. sulphate in some bacteria) * Anaerobic respiration and fermentation can produce ATP without O2 * Fermentation uses substrate-level phosphorylation instead of an electron transport chain to generate ATP
69
Different Fermentation
Alcohol fermentation: in yeast Lactate fermentation: in fungi and bacteria, and in the muscles when O2 is scarce
70
Fermentation, Anaerobic and Aerobic respiration and ATP similarites and differences
* All oxidise glucose (net ATP = 2) * In all three, NAD+ is the oxidizing agent that accepts electrons during glycolysis * Different final electron acceptors: ➢ Organic molecule (e.g. pyruvate or acetaldehyde) in fermentation ➢ O2 in aerobic respiration * Cellular respiration produces 32 ATP per glucose molecule * Fermentation produces 2 ATP per glucose molecule
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