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Flashcards in chapter 11 Deck (104):
1

what are carbohydrates?

aldehyde or ketone compounds with multiple hydroxyl groups

2

what are the 4 roles of carbs?

1. energy stores, fuels, and metabolic intermediates
2. ribose and deoxyribose sugars form part of the structural framework of RNAand dna

3. polysaccharides are structural elements of cell walls of bacteria and plants

4. linked to many proteins and lipds: help mediate interactions among cells and among other elements in the cellular environment

3

what are monosaccharides

the simplest carbohydrates: adehydes or ketones that have 2 or more hydroxyl groups

4

empiricle formula of monsacharides

C-(H2O)n (carbon hydrate)

5

what are the smallest monosaccharides called?

trioses

6

what are the 2 trioses?

hihydroxy acetone, and glyceraldehyde

7

how many steroismoers of dehydroxyacetone and glyceraldehyde are there?

no stereoisomer for dihydroxyacetone, 2 stereoisomers for glyceraldehyde due to 1 symmetric carbon

8

in fischer projections, which bonds come out of the page and which go into the page?

horizontal bonds (in front of the plane)
vertical bonds (behind the plane)

9

what are monosaccharides called with 4, 5, 6, 7 carbon atoms?

tetroses, pentoses, hexoses, and heptoses

10

what do "L" and "D" designate in monosaccharides?

designate the absolution configuration of the asymmetric carbon farthest from the adehyde or keto group (D means OH on the right of the fischer projection)

11

are the D form and L form of the same sugar enantiomers?

yes they are mirror images

12

what are diastereomers?

not mirror immages of each other

13

what is it called if sugars differ in configuration at only 1 asymetric carbon?

epimers

14

how do you number a ketose?

start at end closest to carbonyl

15

why do sugars for rings?

aldehyde can react with an alcohol to form a hemiacetal
ketones can react with alcohol to form hemiketals

16

what do you call a 5 and 6 memvbered ring?

furanose, pyranose

17

substituents drawn to the right on a fisher projection are draw ________ on a haworth projection?

drawn down (down right rule)

18

for D sugars the higest number carbon is drawn _______ on a hawarth projection, how about for an L sugar?

drawn up for D
drawn down for L

19

how does OH group at anomeric position drawn for L and D

for D, alpha is down, and beta is up.

for L, alpha is up, and B is down

20

how does the prevalence of different forms of fructose change in different situations?

pyranose form
predominates in
fructose free in solution
•! furanose form
predominates in many
fructose derivatives

21

what are the 2 non-planar conformations pyranose rings can adopt? which is more common for glucose?

chair and boat, chair

22

what non planar conformation are furanoses in?

puckered - 4 atoms nearly coplanar and 5th is .5 angstroms above the plane

23

what are the 2 conformations of ribose?

c2-endo (c2 is out of the plane on the same side as c5)
c3-endo (c3 is out of the plane on the same side as c5)

24

monosaccharides may react with alcohols and amines to form?

modified monosaccarides

25

what is a glycosidic bonds, specifically an oglycosidic bond and an nglycosidic bond

a glycosidic bond is the bond formed between the anomeric carbon of glucose and the hydroxyl oxygen atom of an alcohol (O-glycosidic bond) or an anomeric carbon atom of a sugar and a nitrogen atom of an amine (N-glycosidic bond)

26

what are reducing sugars?

sugars that can react with oxidizing agensts such as cupric ion (cu2+) because the open chain form has a free aldehyde group that can be oxidized

27

what is significant about reducing sugars

they can react with other moleculse to from mdified monosacharides (for example they can form glycosylated hemogolobin)

28

where are modified monosacharides usually found?

surface of cells (ie sialic acid)

29

what are examples of modified monosaccharides?

beta-L-fucose
beta-D-acetylgalactosamine
beta-D-acetylglucosamine
sialic acid

30

why are sugars phosphorylated?

1. phosphorylation makes sugars negatively charged, negative charge prevents these sugars from spontaneously leaving the cell by crossing the hydrophobic cell membranes

2. phosphorylation creates reactive intermediates what will more readily form linkages to other molecules

31

what are oligosaccharides

built by the linkage of 2 or more onosaccharides by o-glycosidic bonds

32

what is maltose

disaccharides containing 2 d-glucose residues joined by alpha-1,4-glycosidic bond

33

what is sucrose/table sugar

1 glucose and 1 fructose, 1,4 linkage, alpha for glucose and beta linkage for fructose

34

what is lactose

it is found in milk. consists of galactose joined to glucose by beta 1,4, glycosidic linkage

35

what is sucrose and lactose hydrolyzed by?

sucrase and lactase

36

where are sugar digestive enzymes found in the small intestine?

present on microvilli that project from the outer face of the plasma membrane of intestinal epitheilial cells

37

what are polysaccharides called if all the monosaccharides are the same?

homopolymers

38

what is the most common homopolymer in animal cells is?

glycogen (storage form of glucose)

39

what is a common homopolymer in plant cells?

cellulose (structural rather than nutritional)

40

what is the glucose reservoir in plants called?

starch

41

what are 2 types of starch

1. amylose (unbranched type of starch, glucose residues in an alpha 1, 4 linkage.
2. amylopectin (branched form, ahs 1 alpha 1,6 linkage per 30 alpha 1,4 linkages)

42

what effects does glucose storage as starch minimize?

osmotic effects

43

what does branching in strach provide?

more compact structure

44

how is starch injested by human beings hydrolyzed?

both hydolyzed by alpha-amylase, secreted by salivary glands and pancreas

45

glycogen structure

very large branched polymer of gluose linked by alpha 1,4 glycosidic bonds (branches are alpha 1,6 glycosidic bonds present every 10 units)

46

what does the highly branched structur of glycogen permit?

rapid glucose release from glycogen stores (in muscle during exercise) this function is not really needed in plants

47

structure of cellulose

unbranced glucose polymer with beta 1,4 linkages

48

how does using beta 1,4 linkages instead of alpha 1,4 linkages change the structure of cellulose compared to glcogen?

beta 1, 4 linkages allow cellulose to form very long straight chains. optimal for construction of fiber with high tensile strength

49

how are fibrils formed

fibrils are formed by parallel chains that interact through hydrogen bonds

50

what advantages does using an alpha 1,4 linkage provide?

good for forming accessible store of sugar

51

why is fiber in our diet important? why can't we digest it

we lack cellulase (can't digest fiber)
important because soluble fiber such as pectin slows movement of food through gastrointestinal tract allowing for better absorption of food and nutrients, insoluble fibers such as cellulose increase rate at which digestion products move through large intestine

52

what are re proteoglycans?

proteins attached to a particular type of polysaccharide called glycosaminoglycans

53

composition of glycosaminoglycans

disaccharide repeating units containing a derivative of an amino sugar, either glucosamine or galatosamine; have negatively charged carboxylate and/or sulfate groups

54

major glycosaminoglycans in animals. in each case, what is one of the monomers?

chondroitin 6-sulfate
keratan sulfate
heparin
dermatan sulfate
hyaluronate

in each case one of the monomers is a glucosamine derivative

55

what is the colletion of diseases that result from inability to degrade glycosaminoglycans? results?

mucopolysaccharidoses, results in skeletal deformaties and low life expectancy

56

what are the roles of proteoglycans?

1. function as lubricants and structural components in connective tissue
2. mediate adhesion ofcells to the extracellular matrix
3. bind factors that stimulate cell proliferation

57

2 key components of cartilage?

the proteoglycan aggrecan and the protein collagen

58

what does the triple helix of collagen functinally provide for cartilage?

structure and tensie strength

59

what does aggrecan functionally provide to cartilage?

acts as a shock absorber, cant absorb water (absorbed water allows it to spring back after being deformed) for example, when your foot hits the ground, water is squeezed from aggrecan cushioning the impact, and when the pressure is released, water rebinds to aggrecan

60

what enzyme is needed for oligosaccharide assembly? what are they specific to?

glycosyltransferases catalyze the formation of glycosidic bond, each type must be specific to the sugars being linked

61

general form of reaction catalyzed by glycosyltransferase?

sugar to be added comes in the form of an activated sugar nucleotide. acceptor X can be a simple monosaccharide, complex saccharide, or a serine or a threonine residue from a protein. such reactions can proceed with either retention or inversion of configuratation at the glycosidic carbon atom at which the new bond is formed. a given enzyme proceeds by one sterochemical path or the other

62

how does human ABO blood groups differ?

A and B antigens have an extra monosaccharide, N-acetylgalactosamine (A) or galactose (B). O antigen is the oligosaccharide foundation.

specific glycosyltransferases add extra monosacharide to o antigen foundation

63

what does a person inherit that leads to a certain blood type?

each person inherits from each parent a glycosyltransferase. O phenotype results from a mutation that leads to premature termination of translation and no active glycosyltransferase

64

why are different blood types present in humans?

selective pressure on human beings to vary blood type to prevent parasitetic mimicry by disease causing organisms

65

what are glycoproteins

carbohydrate groups covalenetly attached to proteins

66

difference between proteoglycans vs glycoproteins

proteoglycans have much higher carbohydrate than protein, while glycoproteins have higher protein compared to carbohydrate

67

where are glycoproteins found?

cell membranes

68

what are functions of glyco proteins

cell adhesion and binding of sperm to eggs

69

how are carbohydrates linked to proteins?

through asparagine (N-linked) or through serine or threonine (o-linked)

70

when can an asparagine residue accept an oligosaccharide?

an asparagine residue can accept an oligosaccharide only if the residue is part of an Asn-x-ser or asn-x-thr sequence

71

n-linked oligosaccharides have in common?

a pentasaccharide core consiting of 3 mannose and 2 n-acetylglucosamine residues.

72

what contributes to the variety of oligosaccharide patterns?

additional sugars are attached to this core to form the great variety of olligosaccharide patterns

73

what are most proteins present in serum component of blood?

glycoproteins

74

what is erythropoietin? EPO

stimulates production of red blood cells

75

what is erythropoietin used as a treatment for?

anemia

76

how does glycosylation affect EPO in blood? how does unglycosylation affect EPO?

glycosylation enhances stability of EPO in blood, unglycosylated protein is rapidly removed from the blood stream by kidneys

77

How much is EPO is carbohydrate?

40% by weight

78

structure of EPO

165 residues and is n-glycosylated at 3 asparagine residues and O-glycosylated on a serine residue

79

where does glycosylation take place?

in the lumen of the endoplasmic reticulum (ER) and golgi complex

80

what type of glycosylation does the ER do? Golgi?

ER- n-linked glycosylation
Golgi- n-linked and o-linked glycoslylation

81

whatis the major sorting center of the cell?

golgi

82

what advantage does ER have in glycosylating proteins?

it has bound ribosomes that synthesize proteins in close proiximity to glycosylation machinery

83

what chain of events occurs as a protein is syntehsized by a ribosome attached to the ER?

peptide is inserted to lumen of ER as it grows guided by a signal seuqnce that directs prtoein throug ha channel in the ER lumen. signal sequence is cleaved from the protein in the transport process into ER. after protein has entered ER, glycosylation begins. N-linked glycosylation begins in ER and continues in golgi complex.

84

structure of golgi

stack of flattened membranous sacs

85

2 principle roles of golgi

1. carbohydrate units of glycoproteins are laltered and elaborated. o-linked sugar units added and n-linked sugars further modified
2. sorting: proteins proceed from golgi to lysozomes, secretory granules, plasma membrane etc. according to signals encoded for by their amino acid sequence

86

how can we determine the glycosylation pattern of a glycoprotein?

mass spectrometry: most approaches based on the use of enzymes that cleave oligosaccharides at specific types of linkages combined with the use of mass spec. for example n-linked oligosacchirdes can be released from proteins using peptide N-glycosidase F which cleaves n-glycosidic bonds. oligosaccharides are then analyzed using MALDI-TOF or other mass spec techniques

87

many oligosaccharide structures are consistent with the same mass why? and how do you gain more info?

many potential monosaccharide combinations. thus must cleave oligosaccharide with enzymes of varying specificities

88

where does beta 1,4, glactosidease cleave b-glycosidic bonds?

at galactose residues

89

what is a glycoform

a protein with several different glycosidation sites and thus ahve different glycosylated forms. greatly increase complexity of proteome

90

what determines what glycoform is produced?

each glycoform only generated in a specific cell type of developmental stage

91

enormous number of diverse sugars resulting in glycoproteins with diverse binding and biochemical properties is possible because?

1. different monosaccharides can be joined to one anotehr thorugh any of several oh groups
2. c-1 linkage can be alpha or beta
3. extensive branching is possible and can occur in many ways

92

what are lectins?

lectins are partners that bind specific carbohydrate structures

93

where are lectins found?

animals, plants, microorganisms

94

main function of lectin in animals? how does it provide this function?

facilitate cell-cell contact. lectin usually contains 2 or more binding sites for carbohydrate units. binding sites of lectins on surface of one cell interacts with arrays of carbohydrates displayed on surface of another cell

95

what interactions link lectins and carbohydrates

relatively weak interactions that ensure specificity yet permit unlinking (like velcro, each link os weak, but composit is strong)

96

functions of lectins in plants?

insectisides

97

functions of lectins in e. coli

allow e. coli to adhere to epithelia cells of gastrointestinal tract because lectins on the e.coli surface recognize oligosaccharide units on the surface of target cells

98

what difference are the different classes of lectins based on?

based on their amino acid sequences and biochemical properties

99

what is a large class called C type?

one large class is the C type for calcium requiring, found in animals. calcium ion form bridges between protein and sugar through direct interactions with sugar and hydroxyl groups. 2 glutamate residues bind to both clacium ion and sugar, other protein sie chains form hydrogen bonds with other hydroxyl groups on carbohydrate

100

what are selectins

type of c type lectin. bind immune system cells to the sites of injury in the inflammatory response

101

what do L, E, and P forms of selectins bind to?

bind to carbohydrates on lymph-node vessels, endothelium, or activated blood platelets

102

how does influenza virus enter via cell surface carbohydrates

recognizes sialic acid on cell surface. viral protein hemagglutinin binds to cell surface carbohydrates, virus is taken into the cell, and viral protein neuramidase cleaves glycosidic bonds to the sialic acid residues.

103

inhibiting what protein may be a good anti influenza agent?

inhibitors of neuramidase

104

how does glycosylation affect protein folding

some proteins do not fold correctly unless glycosylated. require carbohydrates to undergo proper folding pathway